BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903672
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07730.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1927 0.0
AT4G01170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1055 0.0
> AT3G07730.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G01170.1);
Has 1299 Blast hits to 1149 proteins in 206 species: Archae
- 3; Bacteria - 100; Metazoa - 453; Fungi - 114; Plants -
108; Viruses - 2; Other Eukaryotes - 519 (source: NCBI BLink).
| chr3:2468185-2469606 FORWARD LENGTH=1422
Length=1422
Score = 1927 bits (1043), Expect = 0.0
Identities = 1319/1447 (91%), Gaps = 40/1447 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAAGAAAGCCATTGTGATTGACGATGGATATAGAAGGTTTATGCAT-ACTCGTCC 59
|||||||||||||||||||||||||| |||||||||| |||||||||| | | | |
Sbjct 1 ATGAAGAAGAAAGCCATTGTGATTGATGATGGATATACAAGGTTTATG-GTGAAT-G--A 56
Query 60 AATGTCTGAGAAAATCGATGTTCCAATTATCTGTCTTGACGAAGATGAT-A--ATGATGA 116
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 57 AATGTCTGAAAAAATCGATGTTCCAATTATCTGTCTTGACGAAGATGATGATGATGATGA 116
Query 117 TCTTATGATTGATAAGGACTACAACGTGTTCTTGGATCATCTTCGAAGAGGTGATATTAA 176
||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 117 TCTTATGGTTGATAAGGAGTACAACGTCTTCTTGGATCATCTTCGAAGAGGTGATAAGAA 176
Query 177 CAGTTTAACTC-CTCGCCTTGAGGTTGACAATGGAGAATCTGACATTCGTAGATTAAAGA 235
|||| || | |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 177 AAGTTCAA-GCACTCGCCTTGAAGTTGACAATGGAGCATCTGACATTCGTAGATTAAAGA 235
Query 236 TCTTTTCTTGTGATTCAAAGAGACCAAAGCTTGGGAATGAGAATCCAGTGAAGAACAGAG 295
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 236 TCTTTTCTTGTGATTCAAAGAGATCTAAGCTTGGGAATGAGAATCCAGTGAAGAACAGAG 295
Query 296 TTCATCAACAGGGCAAGAGGAGAACTGTTGG-GTTTAAGGCTGAAAGAGTTAATATCCGA 354
|| |||||||| ||||||||| ||||||||| | || ||| |||||||||||| ||||||
Sbjct 296 TTAATCAACAGAGCAAGAGGAAAACTGTTGGAG-TTGAGGTTGAAAGAGTTAAAATCCGA 354
Query 355 GAAAACATTCAACGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGAATTGCTGAGTTA 414
|||| ||||||| |||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 355 GAAATCATTCAAAGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGGATCGCAGAGTTA 414
Query 415 GAAGCTGCAAAGACTTCAAGAGATGTTCCTTCACTC-AAATCCCAACAAGAAGACACTCA 473
||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||
Sbjct 415 GAAGCTGCAAAGACTTCAAGAGACGTTCCTTCACTCGAAA-CCCAACAAGAAGACATTCA 473
Query 474 ACAACGAGACAACAAAGTTAGGAAACTTTCAGAGTCAAAGGCTGAGACTTTAAGAAGAGA 533
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 474 ACAACGAGACAACAAAGTTAGGAAACTTTCCGAGTCAAAGGCTGAGACTTTAAGAAGAGA 533
Query 534 TGATGTTCCATTGGTTGGAACTCAAGAAGACAGTCAACGAGACCACACAGTTTCTCAAGG 593
|||||||||||||||| |||||||||||||| |||| ||||| ||| |||| || || |
Sbjct 534 TGATGTTCCATTGGTTAAAACTCAAGAAGACATTCAAAGAGACAACAGAGTTGCTGAACG 593
Query 594 GAGAAAGAGG-AATAATGACGATGCTTTAAGAAGAGATGTTCCATTGGTTGA-AACTGGA 651
||||||||| ||| |||||||||||||| || |||||||||||||||| | ||||| |
Sbjct 594 AAGAAAGAGGAAAT-GTGACGATGCTTTAATAAAAGATGTTCCATTGGTT-AGAACTGAA 651
Query 652 GAAGATATTCAACAGACTT-C---AGAGGCTGTTCACGTGGAGGGAGTAAATAGAGTTAC 707
|||| | ||| || || | ||| || |||||| ||| ||||| ||||||||||
Sbjct 652 GAAG--A--CAAGAGGGTTGCTGTGGAGATTGATCACGTAGAGCGAGTACATAGAGTTAC 707
Query 708 AGAGGTTAATGATGTAGATGAGACTTCTTCAAGGAGCAAAGAAGTTTTTGTAGGGCGAAA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 708 AGAGGTTAATGATGTAGATGAGACTTCTTCAAGGAGCAAAGAAGTTTTTGTAGGGAGAAG 767
Query 768 GAATAAGAATGAGGATGGGAGTGAAGCGGTTGTGGATAAGGATTACATGATGTACCTCAC 827
||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 GAAGAAGAATGA-G--GGGAGTGAAGCGGTTGTGGATAAGGATTACATGAGGTACCTCAC 824
Query 828 ATGGCTTGTAGATTCTCTTAGAGATTCTTCGACAACTGAGCCAATGGAAAATCTTCAGAA 887
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 825 ATGGCTTGTAGATTCTCTTAGCGA---TTCGACAACTGAGCCAATGGAAAATCTTCAGAA 881
Query 888 AGATCAGTCTGATTTGGATACTCTAAAAGAATCGACAATGGTCCCTGAAATGGATCCACT 947
|| | |||| |||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 882 AG---A---TGATATGGATACTCTAAAAGAATCGACAATGGTACCTGAATTGGATCCACT 935
Query 948 AGTAGAAGTGAAGGTTGAACCAGATCATGATTGGTCTGATTATATAATTGCCATGGGTGA 1007
|||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 936 AGTAGAAGTGAAGGTTGAACCACATGATGATTGGTCTGATTATATAATTGCGATGGGTGA 995
Query 1008 TTCACCGTTTTTGGATGGAGAGGAGTGTACACCGTTTGTGGTGTCCAAGAAAGTGGTTGA 1067
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 996 TTCCCCTTTTTTGGATGGAGAGGAGTGTACACCGTTTGTGGCGTCCAAGAAAGTGGTTGA 1055
Query 1068 TCTAGATGAAGGAAGTAAAGAGGATGAAAGTAGTAGTAGTTGGTTTAGAAAGGAGCTAAT 1127
||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1056 TCTTGATGAAGGAAGCAAAGAGAATGAAAGTAGTAGCAGTTGGTTTAGAAAGGAGCTAAT 1115
Query 1128 GGATGTTCTGCAAAAA-CCATATGATGAAGGAGAGTTGAAGCTGCTCCATCGTTACGCAT 1186
||||||| || ||||| |||||||||||||||||| |||||| |||||||||||||| ||
Sbjct 1116 GGATGTTTTG-AAAAATCCATATGATGAAGGAGAGATGAAGCAGCTCCATCGTTACGTAT 1174
Query 1187 CAATCCATAGAAAAATGACTCGATGCAGAGAACTACGAAAGGGGAGAGAATCTGATTATG 1246
||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1175 CAATCCATAAAAAAATGACTCGATGCAGAGAACTACGAAAGGGAAGAGGATCTGATTATG 1234
Query 1247 AGACTGACGAACTTGGACAATCTTATCTAGAAAGTTTCCCTGATTTCGAAAAAGAATACA 1306
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 AGACTGACGAACTGGGACAATCTTATCTAGAAAGTTTCCCTGATTTCGAAAAAGAATACA 1294
Query 1307 AGCTTGTGGTTGGTGTTGATAAGGCAAGAGCATTGAAGTTGCTGCGTGGGTTTTTCTTGT 1366
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1295 AGCTTGTGGTTGGTGTTGATAAGGCAAGAGCTTTGAAGTTGCTGCGTGGCTTTTTCTTTT 1354
Query 1367 ACTTGAAATATGTTTCTCATGATGGTGTTTTCAAGCCTTGGGAGAGGAATCAAAGGTGGC 1426
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1355 ACTTGAAATATGTTTCTCATGATGGTGTTTTCAAGCCTTGGGAGAAGACTCAAAGTTGGC 1414
Query 1427 AACCTTA 1433
|||||||
Sbjct 1415 AACCTTA 1421
Score = 71.3 bits (38), Expect = 2e-11
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 354 AGAAAACATTCAACGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGAAT 404
|||| |||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 558 AGAAGACATTCAAAGAGACAACAGAGTTGCTGAACGAAGAAAGAGGA-AAT 607
> AT4G01170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G07730.1);
Has 211 Blast hits to 211 proteins in 60 species: Archae -
0; Bacteria - 22; Metazoa - 50; Fungi - 11; Plants - 77; Viruses
- 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr4:499497-500831
FORWARD LENGTH=1335
Length=1335
Score = 1055 bits (571), Expect = 0.0
Identities = 699/758 (92%), Gaps = 19/758 (3%)
Strand=Plus/Plus
Query 681 TCACGTGGAGGGAGTAAATAGAGTTACAGAGGTTAATGATGTAGATGAGACTTCTTCAAG 740
||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 591 TCATGTGGAGCGAGTAAATAGAGTTACAGAGGTTAATGATGTAGATGAGACTTGTTCAAG 650
Query 741 GAGCAAAGAAGTTTTTGTAGGGCGAAAGAATAAGAATGAGGATGGGAGTGAAGCGGTTGT 800
|||||||||||||||||||||| ||| ||| |||||||| | || ||||||||||||||
Sbjct 651 GAGCAAAGAAGTTTTTGTAGGGAGAAGGAAGAAGAATGA-G--GGTAGTGAAGCGGTTGT 707
Query 801 GGATAAGGATTACATGATGTACCTCACATGGCTTGTAGATTCTCTTAGAGATTCTTCGAC 860
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 708 GGATAAGGATTACATGAGGTACCTCACATGGCTTGTAGATTCTCTTAGGGA---TTCGAC 764
Query 861 AACTGAGCCAATGGAAAATCTTCAGAAAGATCAGTCTGATTTGGATACTCTAAAAGAATC 920
||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||
Sbjct 765 AACTGAGCCAATGGAAAATCTTCAGAAAG---A---TGATATGGATACTTTAAAAGAATC 818
Query 921 GACAATGGTCCCTGAAATGGATCCACTAGTAGAAGTGAAGGTTGAACCAGATCATGATTG 980
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 819 GACAATGGTACCTGAAATGGATCCACTAGTCGAAGTGAAGGTTGAACCAGATCATGATTG 878
Query 981 GTCTGATTATATAATTGCCATGGGTGATTCACCGTTTTTGGATGGAGAGGAGTGTACACC 1040
|||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 879 GTCTGATTATATAATTGCGATGGGTGATTCGCCGTTTTTGGATGTAGAAGAGTGTACACC 938
Query 1041 GTTTGTGGTGTCCAAGAAAGTGGTTGATCTAGATGAAGGAAGTAAAGAGGATGAAAGTAG 1100
|||||||| |||||||||||| |||||||| ||||||||||| ||| || ||||||||||
Sbjct 939 GTTTGTGGCGTCCAAGAAAGTAGTTGATCTTGATGAAGGAAGCAAAAAGAATGAAAGTAG 998
Query 1101 TAGT-AGTTGGTTTAGAAAGGAGCTAATGGATGTTCTGCAAA-AACCATATGATGAAGGA 1158
|| | | ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 999 TA-TCACTTGGTTTAGAAAGGAGCTAATGGATGTTCTG-AAACAACCATATGATGAAGAA 1056
Query 1159 GAGTTGAAGCTGCTCCATCGTTACGCATCAATCCATAGAAAAATGACTCGATGCAGAGAA 1218
||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1057 GAGATGAAGCAGCTCCATCGTGACGTATCAATCCATAGAAAAATGACTCGATGCAGAGAA 1116
Query 1219 CTACGAAAGGGGAGAGAATCTGATTATGAGACTGACGAACTTGGACAATCTTATCTAGAA 1278
||||||||||| |||| ||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 1117 CTACGAAAGGGAAGAGGATCTGTTTATGAGACTGGCGAACTGGGACAATCTTATCTAGAA 1176
Query 1279 AGTTTCCCTGATTTCGAAAAAGAATACAAGCTTGTGGTTGGTGTTGAT-A-A-GGCAAGA 1335
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1177 AGTTTCCCTGATTTCGAAAAAGAATACAAGCTTGTGGTTGGTGTTGATGATAAGGCAAGA 1236
Query 1336 GCATTGAAGTTGCTGCGTGGGTTTTTCTTGTACTTGAAATATGTTTCTCATGATGGTGTT 1395
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1237 GCTTTGAAGTTGCTGCGTGGCTTTTTCTTTTACTTGAAATATGTTTCTCATGATGGTGTT 1296
Query 1396 TTCAAGCCTTGGGAGAGGAATCAAAGGTGGCAACCTTA 1433
|||||||||||||||| || |||||| |||||||||||
Sbjct 1297 TTCAAGCCTTGGGAGAAGACTCAAAGTTGGCAACCTTA 1334
Score = 597 bits (323), Expect = 9e-170
Identities = 456/515 (89%), Gaps = 30/515 (6%)
Strand=Plus/Plus
Query 80 TTCCAATTATCTGTCTTGACGAAGATGATAATGATGATCTTATGATTGATAAGGACTACA 139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 38 TTCCAATTATCTGTCTTGACGAAGATGATGATGATGATCTTATGATTGATAAGGACTACA 97
Query 140 ACGTGTTCTTGGATCATCTTCGAAGAGGTGATATTAACAGTTTAA-CTCCTCGCCTTGAG 198
|||| ||||||||||||||||||||| | | | ||| ||| | ||||| |||||
Sbjct 98 ACGTCTTCTTGGATCATCTTCGAAGA-G-G------A-AGTGTAAGC-CCTCGTCTTGAA 147
Query 199 GTTGACAATGGAGAATCTGACATTCGTAGATTAAAGATCTTTTCTTGTGATTCAAAGAGA 258
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 148 GTTGACAATGGAGAATCTGACATTCGTAAATTAAAGATCTTTTCTTGTGATTCGAAGATA 207
Query 259 CCAAAGCTTGGGAATGAGAATCCAGTGAAGAACAGAGTTCATCAACAGGGCAAGAGGAGA 318
||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 208 TCAAAGCTTGAGAATGAGAATCCAATGAAGAACAGAGTTCATCAACAGGGCCAGAGGAAA 267
Query 319 ACTGTTGGGTTTAAGGCTGAAAGAGTTAATATCCGAGAAAACATTCAACGAGACAACAGA 378
||||||||||| ||||||||||||| ||| |||| ||| | |||||||||||||||||||
Sbjct 268 ACTGTTGGGTTAAAGGCTGAAAGAGATAAAATCCAAGACATCATTCAACGAGACAACAGA 327
Query 379 GTTGCTGAACGAAGAAAGCGGAGAATTGCTGA-GTTAGAAGCTGCAAAGACTTCAAGAGA 437
||||||||||||||||||||||| ||||| || |||||| ||||||||| ||||||||||
Sbjct 328 GTTGCTGAACGAAGAAAGCGGAGGATTGC-GATGTTAGATGCTGCAAAGGCTTCAAGAGA 386
Query 438 TGTTCCTTCACTC-AAATCCCAACAAGAAGACACTCAACAACGAGACAACAAAGTTAGGA 496
||||||| |||| ||| ||||||||||||||| ||||||||||| ||||||
Sbjct 387 CGTTCCTTTACTCGAAA-CCCAACAAGAAGACATTCAACAACGAG---------TTAGGA 436
Query 497 AACTTTCAGAGTCAAAGGCTGAGACT-----TT-AAGAAGAGATGATGTTCCATTGGTTG 550
||||||| || ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 437 AACTTTCTGATTCAAAGGCTGAGACTGAGACTTTAAGAAGAGATGATGTTCCATTGGTTG 496
Query 551 GAACTCAAGAAGACAGTCAACGAGACCACACAGTT 585
||| |||||||||||||||||||||| ||||||||
Sbjct 497 GAAGTCAAGAAGACAGTCAACGAGACAACACAGTT 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5