BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903674 Length=864 Score E Sequences producing significant alignments: (Bits) Value AT3G07750.1 | Symbols: | 3'-5'-exoribonuclease family protein ... 1472 0.0 > AT3G07750.1 | Symbols: | 3'-5'-exoribonuclease family protein | chr3:2473235-2475447 FORWARD LENGTH=1189 Length=1189 Score = 1472 bits (797), Expect = 0.0 Identities = 840/861 (98%), Gaps = 2/861 (0%) Strand=Plus/Plus Query 5 TGGGGCTTTCTCTTGGGGAACAACATTTCGTTAAAGGTGGGATTGCTCAAGATCTTCGAA 64 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 101 TGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAA 160 Query 65 CTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGC 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161 CTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGC 220 Query 125 AGGCTAATGGTTCAGCGAGAGTTAAG-ATAGGTGGAACCGATGTGATTGCTAGTGTAAAG 183 ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 221 AGGCTAATGGTTCAGCGAGAGTT-AGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAG 279 Query 184 GCTGAGATTGGGAGGCCAAGTTCACTCCAACCCGATAAAGGAAAGGTTGCAGTATTCATT 243 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 280 GCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATT 339 Query 244 GATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCT 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 GATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCT 399 Query 304 GAGCTTGCTTTGGCTCTTCATAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGA 363 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 400 GAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGA 459 Query 364 ATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGAT 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 ATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGAT 519 Query 424 GGCCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCT 483 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 GGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCT 579 Query 484 GCTTTAACCAACACGGCCATTCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAG 543 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 580 GCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAG 639 Query 544 CAACCAGAGATTGACATCAGCGACGAGGAATATCTACAATTTGACACTTCCAGTGTCCCG 603 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 640 CAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCG 699 Query 604 GTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAG 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 GTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAG 759 Query 664 GAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGGCAGGCCATATATGCGGG 723 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 760 GAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGG 819 Query 724 TTAACCAAACGAGGCGGATCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTG 783 |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 820 TTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTT 879 Query 784 GCCAAGCATGTGACAGAGAATCTGATGAGCAAACTTGATTCTGAGATTTCAGCTGCAGAG 843 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| Sbjct 880 GCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAG 939 Query 844 GCATCCGAAGACGAATCTTGA 864 || | |||||||||||||||| Sbjct 940 GCCTGCGAAGACGAATCTTGA 960 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42146449333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5