BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903674
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07750.1 | Symbols: | 3'-5'-exoribonuclease family protein ... 1472 0.0
> AT3G07750.1 | Symbols: | 3'-5'-exoribonuclease family protein
| chr3:2473235-2475447 FORWARD LENGTH=1189
Length=1189
Score = 1472 bits (797), Expect = 0.0
Identities = 840/861 (98%), Gaps = 2/861 (0%)
Strand=Plus/Plus
Query 5 TGGGGCTTTCTCTTGGGGAACAACATTTCGTTAAAGGTGGGATTGCTCAAGATCTTCGAA 64
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 101 TGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAA 160
Query 65 CTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGC 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 CTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGC 220
Query 125 AGGCTAATGGTTCAGCGAGAGTTAAG-ATAGGTGGAACCGATGTGATTGCTAGTGTAAAG 183
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 221 AGGCTAATGGTTCAGCGAGAGTT-AGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAG 279
Query 184 GCTGAGATTGGGAGGCCAAGTTCACTCCAACCCGATAAAGGAAAGGTTGCAGTATTCATT 243
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 280 GCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATT 339
Query 244 GATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCT 399
Query 304 GAGCTTGCTTTGGCTCTTCATAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGA 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGA 459
Query 364 ATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGAT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGAT 519
Query 424 GGCCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCT 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCT 579
Query 484 GCTTTAACCAACACGGCCATTCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAG 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 580 GCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAG 639
Query 544 CAACCAGAGATTGACATCAGCGACGAGGAATATCTACAATTTGACACTTCCAGTGTCCCG 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 640 CAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCG 699
Query 604 GTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAG 759
Query 664 GAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGGCAGGCCATATATGCGGG 723
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 760 GAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGG 819
Query 724 TTAACCAAACGAGGCGGATCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTG 783
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTT 879
Query 784 GCCAAGCATGTGACAGAGAATCTGATGAGCAAACTTGATTCTGAGATTTCAGCTGCAGAG 843
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 880 GCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAG 939
Query 844 GCATCCGAAGACGAATCTTGA 864
|| | ||||||||||||||||
Sbjct 940 GCCTGCGAAGACGAATCTTGA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5