BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903696
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07970.1 | Symbols: QRT2 | Pectin lyase-like superfamily pro... 2224 0.0
> AT3G07970.1 | Symbols: QRT2 | Pectin lyase-like superfamily protein
| chr3:2541006-2543432 FORWARD LENGTH=1382
Length=1382
Score = 2224 bits (1204), Expect = 0.0
Identities = 1280/1318 (97%), Gaps = 0/1318 (0%)
Strand=Plus/Plus
Query 1 ATGTATGAAAAGATCATAATCATATCAGTATTCCTCTTAACATTTCTTCCTTCTTGTTTC 60
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTATGAAAAGATCATAATCTTATCAGTATTTCTCTTAACATTTCTTCCTTCTTGTTTC 60
Query 61 AGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAGCTACCCATTTAATCATAGAGATGATCTTTTCATGTCTTCTAATGTTTATTATGAA 120
Query 121 ACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAATCGACAACATCAACATGGTCACAATACACGCAACAGTCACTTGAAAAATCGCCAT 180
Query 181 GGTTATGCTCCTGGATCTTCTCCTCGAGCTTTTAACGTCAACACTTTTGGTGCTAAAGCC 240
|||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 181 GGTTATGCTCCTAGATCTTCTCCTCGATCTTTTAACGTCAACACTTTCGGTGCTAAAGCC 240
Query 241 AACGGAAACGACGATTCTAAGGCATTCATGAAAGCCTGGGAAGCAGCTTGTTCATCGACT 300
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 241 AACGGGAACGACGATTCTAAGGCCTTCATGAAAGCTTGGGAAGCAGCTTGTTCGTCAACC 300
Query 301 GGAATAGTTTACGTTGTGGTTCCAAACAATAGAGATTACATGCTTAAATCGGTTACATTC 360
|||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||| |||
Sbjct 301 GGAATAGTTTACATTGTGGCTCCAAAGAATAGAGATTACATGCTTAAAGCGGTTACGTTC 360
Query 361 TCTGGTCCATGTAAATCAACCTTGATTATTTTTAAGATTTACGGAATGATTGAGGCATGG 420
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TCTGGTCCATGTAAATCATCCTTGATTATTTTTAAGATTTACGGAAGGATTGAGGCATGG 420
Query 421 AAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCGATAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GAAAATCCATCAGACTACAAGGAACGTAGGCATTGGATTGTGTTCGAAAATGTCAATAAC 480
Query 481 CTTCGAGTTGAAGGAGGTGGCCGCATCGACGGTAATGGACATATTTGGTGGCCAAACTCT 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTCGAGTTGAAGGAGGTGGGCGCATCGACGGTAATGGACATATTTGGTGGCCAAAATCT 540
Query 541 TGCAAAATCAACCCTCAACTTCCATGCCTGGGAGCTCCAACGGCCGTTACGTTTGTGGAG 600
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 541 TGCAAAATCAACCCTCAACTTCCTTGCCTGGGAGCTCCAACGGCGGTTACGTTTGTGGAG 600
Query 601 TGTAATAACTTGAGAGTTAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACG 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTAATAACTTGAGAGTAAGTAACATTAGGTTGGAAAACGCACAGCAAATGCATTTGACG 660
Query 661 TTCCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTCAAGACTGCAAAAACGTGAAGGCTTTGAATCTTATGGTCACATCTCCGGCTGATAGT 720
Query 721 CCTAACACCGATGGCATTCACGTTACCGGAACTCAAAATATCTTAATTCAAGACTCTATC 780
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 721 CCTAACACTGATGGCATTCACGTTTCCGGAACTCAGAATATCTTAATTCAAGACTCTATC 780
Query 781 GTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCCGTACTGGTGATGATTGTATATCGATAGTGAGTGGGTCGGAGAATGTGAGAGCGACA 840
Query 841 GGCATTACGTGCGGCCCGGGTCATGGAATCAGCATTGGAAGTTTGGGAGAAGATAACTCA 900
|||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GGCATTACATGCGGGCCTGGTCATGGAATCAGTATTGGAAGTTTGGGAGAAGATAACTCA 900
Query 901 GAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAAGCATATGTTTCAAATGTGGTAGTCAACAAAGCGACTCTTATAGGAACCACTAATGGT 960
Query 961 GTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGAGAATCAAGACTTGGCAGGGAGGACATGGAATGGCAAAGAACATCATATTCCAAGAC 1020
Query 1021 ATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCATAATGAAAAACGTTACAAACCCAATAATCATCAACCAGGACTACTGCGATCGTGTT 1080
Query 1081 GAATCATGTCCCGAACAGAAATCGGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATA 1140
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAAGCATGCCCCGAACAGAAATCCGCGGTACAAGTGAGCAATGTGTTGTACAAAAACATA 1140
Query 1141 CAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAGCATTCCATGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 CAAGGGACGAGCTCAAGACCCATAGCTGTGAAATTTGTATGCAGCAAGAACATTCCATGT 1200
Query 1201 CGAGGAATATCAATGCAAAACGTTAAATTGGTCGATCAAACTCAACAAGATGTATCCAAA 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 CGAGGAATATCAATGCAAAACGTTAAACTGGTCGATCAAACTCAACAAGATGTATCCAAA 1260
Query 1261 GCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTTCTTGCTCCAATGTGAAGTTGGACACCCGAGGAAATGTTTCTCCTCTTTGCACTT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5