BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903706
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08490.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 928 0.0
> AT3G08490.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1);
Has 161 Blast hits to 158 proteins in 15 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:2573944-2575215 REVERSE LENGTH=1067
Length=1067
Score = 928 bits (502), Expect = 0.0
Identities = 643/710 (91%), Gaps = 14/710 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGAAGAGAGGACCACTACTCAAACTACTTCGTCCAAAGCCCTTCATCGCTATCC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||| || | | |
Sbjct 91 ATGGAGAGAAGAGAGGACCACTACTCAAACTACTTCGTCCAAAGTCCTTCAACGGTTTTC 150
Query 61 CACGA-CCTCGAGTTCGAATTCCAGTCTCCC-ACTCGATCTGACTCAGCGCCATTGGTCC 118
|| || ||| || | ||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 151 CATGACCCT-GAATCCGAATTCCAATC-CCCGATTCGATCTGACTCAGCGCCATTGGTCC 208
Query 119 TATCCCCCGTCAATGAATTCCCCAAGCACTCAGATTTCTTGAGAAACTCCGGAAACAAAT 178
||||| ||||||||||||||| | | |||||||||||||||||||||||| |||||| |
Sbjct 209 TATCCAGCGTCAATGAATTCCCGAGGTACTCAGATTTCTTGAGAAACTCCGAAAACAACT 268
Query 179 TAGTGTATGAGGATGATGAGAAAATG-TTGGTGCCATTGCGTCGTAGCTCCAATTCGGGT 237
| ||||||||||||||||||||| | |||||||||||| | | | |||||||||| ||
Sbjct 269 TCTTGTATGAGGATGATGAGAAAA-GATTGGTGCCATTG-G--GGACCTCCAATTCGAGT 324
Query 238 TGGTGGATCGTTCTGCAAATAGGTTGGAGGTTTTTGTTTAGCTTAGGAGTGGCATTGCTT 297
||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TGGTGGATCGTCCTCCAAGTAGGTTGGAGGTTTTTGTTTAGCTTAGGAGTGGCATTGCTT 384
Query 298 GTCTTCTACATTGGT--TTAACCTTTTCGGCCT--GTTTTCCTTTTGGGATTGGAAGGTT 353
||||||||||||| | | | ||| || ||| ||| ||||| | ||||| |||||
Sbjct 385 GTCTTCTACATTGCTACTCAGCCTCCTCATCCTAACATTT-CTTTTCGAATTGGGAGGTT 443
Query 354 TAATCAGTTTATGTTAGAAGAAGGTGTGGATTCACATGGAGCGTCGACTAGGTTCCTCAC 413
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 444 TAATCAGTTCATGTTAGAAGAAGGTGTGGATTCACATGGAGTGTCGACTAAGTTCCTCAC 503
Query 414 TTTCAATTGCTCTACCAAGCTCATAGTAGATAACAAGTCTAATGTCTTTGGCCTTCACAT 473
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 504 TTTCAATTGCTCTACCAAGCTCATAATAGATAACAAGTCTAATGTCTTTGGCCTTCACAT 563
Query 474 TCATCCTCCATCTATCAAATTCTTCTTTGGCCCCCTCAACTTTGCAAAGGCGCAAGGACC 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 564 TCATCCTCCATCTATCAAATTCTTCTTTGGCCCACTCAACTTTGCAAAGGCGCAAGGACC 623
Query 534 TAAACTATATGCGTTGAGCCATGAGTCGACAACATTTCAGCTCTACATAGGAACAACGAA 593
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 624 TAAACTATATGGGTTGAGCCATGAGTCGACAACATTTCAGCTATACATAGCAACAACGAA 683
Query 594 CCGGGCAATGTATGGGGCAGGAGCGGAGATGGATGATATGCTTCAGTCGAGAGCTGGATT 653
|||||| ||||||||||| ||| | |||||| |||||||||||| |||||||||||||||
Sbjct 684 CCGGGCGATGTATGGGGCGGGAACAGAGATGAATGATATGCTTCTGTCGAGAGCTGGATT 743
Query 654 GCCTCTAATACTGCGGACAAGCATAATTTCCGACTATCGAGTTGTCTGGA 703
|||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 744 GCCTCTAATACTGCGGACGAGTATAATTTCCGACTATCGAGTTGTCTGGA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5