BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903715

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16100.1 | Symbols:  | Protein of unknown function (DUF789) ...   335    3e-91


> AT4G16100.1 | Symbols:  | Protein of unknown function (DUF789) 
| chr4:9105720-9108159 FORWARD LENGTH=1447
Length=1447

 Score =  335 bits (181),  Expect = 3e-91
 Identities = 239/266 (90%), Gaps = 7/266 (3%)
 Strand=Plus/Plus

Query  138   GGTACCTAATATACCAAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT  197
             |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  937   GGTACCCAATATACCGAATACCATTAGGTCAATCGTTACAAAACCTCGATGCTTGCTTTT  996

Query  198   TACCATTCCACTCTTTATCAACACACTGTC---G----AGCAATGAGGAAGGTCAAAGCT  250
             || |||||||||| || ||||||| |||||   |    ||||||||||||||||||||||
Sbjct  997   TAACATTCCACTCGTTGTCAACACCCTGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCT  1056

Query  251   CAAGCAAATCAGTTGTACCGTCGAAGCTTCCACTGCCCACTTTCGGTCCCGCATCCTACA  310
             |||||||||| |||| | || ||||||||||| ||||||||||||||| |||||||||||
Sbjct  1057  CAAGCAAATCGGTTGCATCGGCGAAGCTTCCATTGCCCACTTTCGGTCTCGCATCCTACA  1116

Query  311   AGTTTAAATTATCGGTATGGAGCCCAGAGAGTGACATGGACGAGAACCAGAGAGTCGGGA  370
             |||||||| | || | ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  1117  AGTTTAAACTGTCAGAATGGAGCCCAGAGAGTGACGTAGACGAGAACCAGAGAGTCGGGA  1176

Query  371   CGCTGTTACGAACGGCTGAAGAGTGG  396
             ||||| ||||||| ||||||||||||
Sbjct  1177  CGCTGCTACGAACAGCTGAAGAGTGG  1202



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30994468699


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5