BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903729
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08690.1 | Symbols: UBC11, ATUBC11 | ubiquitin-conjugating e... 532 8e-151
AT3G08700.1 | Symbols: UBC12 | ubiquitin-conjugating enzyme 12 ... 531 3e-150
> AT3G08690.1 | Symbols: UBC11, ATUBC11 | ubiquitin-conjugating
enzyme 11 | chr3:2641056-2642688 FORWARD LENGTH=835
Length=835
Score = 532 bits (288), Expect = 8e-151
Identities = 395/444 (89%), Gaps = 17/444 (4%)
Strand=Plus/Plus
Query 17 GGAT-TTCAAGGGAACTCAGGGACCTTCAGAGGGATCCTCCTGCAAACTGTAGCGCAGGT 75
|||| || || ||| |||| ||| || |||| |||||||||| ||||||| ||||| |||
Sbjct 203 GGATCTTGAA-GGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGT 261
Query 76 CCTGTGGCTGAAAAGGACATGTACCATTGGCAAGCGACTATCATGGGACC-CCATGACAG 134
|| ||||||| ||||||||| |||||||||||| |||||||||||||| || ||| ||
Sbjct 262 CCGGTGGCTG---AGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCC-TGAAAG 317
Query 135 TCCGTTTTCCGGAGGCGTATTTTTGGTCAAC-ATTCATTTCCCTTCGGATTACCCTTTCA 193
||||| | ||||||| || |||||||| | |||||||||||| ||||||| |||||||
Sbjct 318 TCCGTATGCCGGAGGAGTGTTTTTGGT-TTCTATTCATTTCCCTCCGGATTATCCTTTCA 376
Query 194 AGCCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAA 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AGCCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAA 436
Query 254 GTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATATCCAAGGTTT 313
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 437 GTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGGTTC 496
Query 314 TGTTGTCGATTTGCTCGCTGCTGACTGACCCGAACCCAAATGATCCTCTTGTGGCGGAGA 373
|||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||
Sbjct 497 TGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGA 556
Query 374 TAGCTCA-ACTGTACAAGGAAA-ATAAATCCAAGTACGAGTCAA-TGGCGCA-AAGCTGG 429
||||||| | |||||||| | | ||| ||||||||||||||||| || || | |||||||
Sbjct 557 TAGCTCACA-TGTACAAG-ACAGATAGATCCAAGTACGAGTCAACTG-CG-AGAAGCTGG 612
Query 430 ACACAGAAGTACGCAATGGGATGA 453
||||| |||||||||||||| |||
Sbjct 613 ACACAAAAGTACGCAATGGGTTGA 636
> AT3G08700.1 | Symbols: UBC12 | ubiquitin-conjugating enzyme 12
| chr3:2643482-2644545 FORWARD LENGTH=450
Length=450
Score = 531 bits (287), Expect = 3e-150
Identities = 389/439 (89%), Gaps = 4/439 (1%)
Strand=Plus/Plus
Query 17 GGATTTCAAGGGAACTCAGGGACCTTCAGAGGGATCCTCCTGCAAACTGTAGCGCAGGTC 76
|||||||||||||||| ||||| | ||||| ||||||| |||||||||||||||||||
Sbjct 14 GGATTTCAAGGGAACTGAGGGATATGCAGAGACATCCTCCAGCAAACTGTAGCGCAGGTC 73
Query 77 CTGTGGCTGAAAAGGACATGTACCATTGGCAAGCGACTATCATGGGACCCCATGACAGTC 136
|||||||||| ||||||| | |||||||||||| |||||||||||||| ||||||||||
Sbjct 74 CTGTGGCTGAGGAGGACATATTCCATTGGCAAGCAACTATCATGGGACCGCATGACAGTC 133
Query 137 CGTTTTCCGGAGGCGTATTTTTGGTCAAC-ATTCATTTCCCTTCGGATTACCCTTTCAAG 195
||| |||||||||||||||| ||| | ||| ||||| |||||||||| |||||||||
Sbjct 134 CGTATTCCGGAGGCGTATTTACGGT-TTCTATTGATTTCTCTTCGGATTATCCTTTCAAG 192
Query 196 CCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT 255
|||||||||||| ||| ||||||||||||||||| ||||||||| | ||||| |||||
Sbjct 193 CCACCAAAGGTGAATTTCAAGACTAAGGTGTACCACCCAAACATCGACAGCAAAGGAAGC 252
Query 256 ATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATATCCAAGGTTTTG 315
||||||||||| || ||||||||||||||||| ||||||| ||| | |||||||||||||
Sbjct 253 ATTTGCCTTGACATATTGAAAGAGCAATGGAGTCCTGCTCCTACCACATCCAAGGTTTTG 312
Query 316 TTGTCGATTTGCTCGCTGCTGACTGACCCGAACCCAAATGATCCTCTTGTGGCGGAGATA 375
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 313 TTGTCGATTTGCTCGCTGCTGACTGACCCGAACCCAAATGATCCTCTTGTGCCGGAGATA 372
Query 376 GCTCAACTGTACAAGGAAAATAAATCCAAGTACGAGTCAA-TGGCGCAAAGCTGGACACA 434
||||| || ||||||| | ||||||| || |||||||||| || | |||| ||||||||
Sbjct 373 GCTCATCTCTACAAGGTAGATAAATCAAAATACGAGTCAACTG-CACAAAAATGGACACA 431
Query 435 GAAGTACGCAATGGGATGA 453
||||||||| |||||||||
Sbjct 432 GAAGTACGCGATGGGATGA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5