BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903774
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09110.1 | Symbols: | Protein of unknown function (DUF674) ... 2215 0.0
> AT3G09110.1 | Symbols: | Protein of unknown function (DUF674)
| chr3:2794165-2795991 REVERSE LENGTH=1666
Length=1666
Score = 2215 bits (1199), Expect = 0.0
Identities = 1389/1482 (94%), Gaps = 8/1482 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAGAGCTCCGAGAAGCCCAAGTTTAGTCTAAGACTTCTCATTGATGAGGAGAAA 60
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 29 ATGGCTAAGAGCTTTGAGAAGCCGAAGTTTAGCCTAAGACTTCTCATTGATGAGGAGAAA 88
Query 61 AACAGAGTTGTTTTGGCTGAAGCTGGGAAGGATTTTGTTGATGTGCTCTGTAGTCTTTTG 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AACAGAGTTATTTTGGCTGAAGCTGGGAAGGATTTTGTTGATGTGCTCTGTAGTCTTTTG 148
Query 121 ACTCTCCCTATGGGTACCATTGTCAGGTTGCTTGAGAAGCATCAGAATCCGCAGTCTGCA 180
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 149 ACTCTTCCTATGGGTACCATTGTCAGGTTGCTCGAGAAGCATCAGAATCCGCAGTCTTCA 208
Query 181 ATTGTTGGTTGTTTTCACAATCTTTACAAAAGTGTTTCAGACATGGACGTTGATAACTTC 240
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 209 GTCGTTGGTTGTTTACACAATCTTTACAAAAGTGTTGCAGACATGGACGTTGATAATTTC 268
Query 241 CAGACTCAAGCTTGTAAGAATTTGTTGCTGCATCCTCGTAGTGCTAAGGCGAGTCATGGC 300
|| |||||||||||||| |||| |||||||||||||| ||||| |||| ||||||||||
Sbjct 269 GAGTCTCAAGCTTGTAAGCATTTCTTGCTGCATCCTCGGAGTGCGAAGGGGAGTCATGGC 328
Query 301 AGAAAGCTAAAGCTGAACATAGATGACACTGAGGCGACCAAATTCTTTGTCTGCCCAAAT 360
||| | |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 329 AGAGATCTAAAGCTCAACATTGATGACACCGAGGCGACCAAGTTCTTTGTCTGCCCAAAT 388
Query 361 TTTGTTTCTACTGAAGCATGCCGTAAGTTATACAGCCATGTTAGTACCACGAAGTGTTGT 420
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||
Sbjct 389 TTTGTTTCTACTGAAGCATGCCGTAAGTTATTCAGCAATGTTAGTACCATGAAGTGTCGT 448
Query 421 TGTGGAAGTTCAATGAC-CCATGAGATTCCGGTTGAAGAAGATCAAGCTGATGGAGTATT 479
|||||||| || ||| | || ||||||||||||||||||| | |||||||||||||||||
Sbjct 449 TGTGGAAGCTCTATG-CACCGTGAGATTCCGGTTGAAGAACAGCAAGCTGATGGAGTATT 507
Query 480 GCTCAGCTGCAGAACATCATTTGTTATTACTGATGATCTTAAAGTGGCATTGAACTCTAT 539
| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 508 TCCCAGCTGCAGAACATCATTTGTTATTACGGATGATCTCAAAGTGGCATTGAACTCTAT 567
Query 540 GGGTCTTGTTATGAATGTTCTCAATGATCTTGGCTACTCTGGTTTTGATAAGCTGCAAGA 599
|||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 568 GGGTCTTGTTTTGAATGTCCTCAATGATTTTGGTTACTCTGGTTTTGATAAGCTGCAAGA 627
Query 600 AATGCTTATTGATGTTGGTTTTGAAGAGATTCTAACTTTGCTAGGGTGTTTGTTCACTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AATGCTTATTGATGTTGGTTTTGAAGAGATTCTAACTTTGCTAGGGTGTTTGTTCACTTC 687
Query 660 GGAAGCTCCATTGACAGACACCTTCCTGAGGAAACATTGCATGTCAAGGAAACGTAAAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GGAAGCTCCATTGACAGACACCTTCCTGAGGAAACATTGCATGTCAAGGAAACGTAAAAT 747
Query 720 GTTGACACCACTTGTACAAGAAAGTAGTGTTGCAGGGGTTGCAGAAACACC-CTTAACTT 778
|||||||||||||||||||||||| ||||||||||| | |||||| | | | ||||||||
Sbjct 748 GTTGACACCACTTGTACAAGAAAGCAGTGTTGCAGGAGCTGCAGACA-ATCTCTTAACTT 806
Query 779 TGAAAGTTTATGTTAGAAAGTCAGACAGGGCTGTTCTGTATGCTGAATGCAGAGAAGAAT 838
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 807 TGAAAGTTTATGTTAGAAAGACAGACAGGGCTGTTCTCTATGCTGAGTGCAGAGAAGAAT 866
Query 839 TTGTTGATTTTCTATTCACTTTTCTTGCCATCCCGCTTGAGTTTGCTTGGGAACTTTCTA 898
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 867 TCGTTGATTTTCTTTTCACTTTTCTTGCCATCCCGATTGAGTTTGCTTGGGAACTTTCTA 926
Query 899 TTGACAATGTTAAAATGGGCTGCGTTGGTAATCTGTGCAGAAGCGTGAAAGATTTGAGCT 958
|||||| || ||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 927 TTGACATTGGTAATATGGGCTGTGTTGGTAATCTGTGCAGAAGTGTGAAAGATTTGAGCT 986
Query 959 TTGAGAAGCAGAAAGAAGCCACTGTTTCTAAATGCATGCTTCCTTATTAT-TACAATGGA 1017
||||||||||||||| |||||| |||||| |||||||||||||||||| | ||| ||||
Sbjct 987 TTGAGAAGCAGAAAGCAGCCACAGTTTCTCAATGCATGCTTCCTTATT-TCTAC--TGGA 1043
Query 1018 AGGGCACAACCTCTAGATGTTGTTATCCAGGAATCACCAGAATATGAATGCTTGGTTTCC 1077
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1044 AGGGCACAACCTCTTGATGTTGTTATCCAGGAATCACCAGAATATGAATGCTTGGTCACC 1103
Query 1078 CGTTATGGTCATAGCATGCTCTCTAAAAAGATTAACAAGACTGTGCTTTCAAACGGTGAA 1137
| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1104 CATTATGGTCATAACATGCTCTGTAAAAAGATTAACAAGGCTGTGCTTTCAAACGGTGAA 1163
Query 1138 ATACTTGCAAAGTTCACTTCAGTTTCTGCTAGTATTGGACTTGTGAAGGAAGAAACGAAT 1197
||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1164 ATAATTGCAAAGTTCACTTCAGCTTCTGCTAGTATTGGACTTGTGAAGGGAGAAACAAAT 1223
Query 1198 TTCATAGTGTCTGATGATCTGGTTGTCACTCCTATGAACTCGTCCTCAACAATTTCACTG 1257
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1224 TTCATAGTGTCAGATGATCTGGTTGTCACTCCTATGAACTCGTCCTCAACAATTTCATTG 1283
Query 1258 TTAAGCAAGCTGCAGATGAACATTGGTGATATCGAGGAGCAAGTAATTAGCATTGGCAAA 1317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1284 TTAAGCAAGCTGCAGATGAACATTGGTGATATTGAGGAGCAAGTAATTAGCATTGGCAAA 1343
Query 1318 GCTGAGGCCACTAGTTTACTTAGAGCTTCGTTGATCACAACCTCTGCGTTAACCAATGGT 1377
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1344 GCTGAGGCCACTAGCTTACTTAGAGCTTCTTTGATCACAACCTCTGCCTTAACCAATGGT 1403
Query 1378 CTCTCCAGCTTCCTCTCAAAGATGGACCCGGACGAAGCAACTCAAGCTACACCTAAGATT 1437
||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1404 CTCTCAAACTTCCTCTCAAAGATGGACCCGGACGAAGTAACTCAATCTACACCTAAGATT 1463
Query 1438 CAAAAGTCTGACAAACCCAATGAAGCATGGCAGCTTCTGTAG 1479
||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1464 CAAAAGTCTGACAAACCAAATGAAGCTTGGCAGCTTCTGTAG 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5