BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903793
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09270.1 | Symbols: ATGSTU8, GSTU8 | glutathione S-transfera... 1114 0.0
> AT3G09270.1 | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase
TAU 8 | chr3:2848289-2849289 REVERSE LENGTH=856
Length=856
Score = 1114 bits (603), Expect = 0.0
Identities = 652/676 (96%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 1 ATGAACCAAGAAGAGCAAGTAAAGCTTATGGGATTATGGGGAAGTCCTTTTAGTAAAAGA 60
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||
Sbjct 64 ATGAACCAAGAAGAGCACGTAAAGCTTCTGGGCTTATGGGGAAGTCCTTTTAGCAAAAGA 123
Query 61 GTAGAGATGGTCCTAAAACTTAAGGGCATACCTTATGAGTACATTGAAGAAGATGTTTAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GTAGAGATGGTCCTAAAACTTAAGGGCATACCTTATGAGTACATTGAAGAAGATGTTTAT 183
Query 121 GGTAACAAGAGCCCTATGCTTCTCAAGTACAACCCTATTCACAAGAAGGTCCCTGTCCTC 180
|| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 GGAAACAGGAGCCCTATGCTTCTCAAGTACAACCCTATACACAAGAAGGTCCCTGTCCTC 243
Query 181 ATCCACAATGGTAGATCGATAGCCGAATCTA-TGGTGATTGTCGAATACATCGAAGATAC 239
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 244 ATCCACAATGGTAGATCGATAGCCGAATC-ATTGGTGATTGTCGAATACATCGAAGATAC 302
Query 240 GTGGAAGACAAGTCACAAGATCTTGCCTCAAGATCCTTATGAACGCGCCATGGCCCGTTT 299
||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 303 GTGGAAGACAACTCACACGATCTTGCCTCAAGATCCTTATGAACGTGCCATGGCCCGGTT 362
Query 300 TTGGGCTAAGTATGTGGATGATAAGGTAATGTTAGCAGTGAAGAAGGCATGTTGGGGACC 359
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 363 TTGGGCTAAGTATGTGGATGAAAAGGTAATGTTAGCAGTGAAGAAAGCTTGTTGGGGACC 422
Query 360 GGAGAGTGAAAGAGAAAAAGAAGTGAAAGAGGCTTATGAGGGTTTGAAATGTTTAGAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGAGAGTGAAAGAGAAAAAGAAGTGAAAGAGGCTTATGAGGGTTTGAAATGTTTAGAAAA 482
Query 420 AGAGCTTGGAGATAAACtttttttCGGAGGAGACACAATTGGATTTGTCGATATAGCGGC 479
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 483 GGAGCTTGGAGATAAACTTTTTTTCGGAGGAGAGACAATTGGATTTGTCGATATAGCAGC 542
Query 480 TGATTTCATAGGATATTGGTTAGGGATCTTCCAAGAAGCTTCAGGCGTCACGATCATGAC 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 543 TGATTTCATAGGATATTGGTTAGGGATTTTCCAAGAAGCTTCAGGCGTCACGATCATGAC 602
Query 540 CGCGGAGGAGTTTCCAACACTTCAACGTTGGTCGGAAGATTTCGTGGGAAATAATTTTAT 599
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 CGCGGAGGAGTTTCCAAAACTTCAACGTTGGTCGGAAGATTTCGTGGGAAATAACTTTAT 662
Query 600 TAAGGAAGTTTTGCCGCCTAAGGAGAAGCTCGTGGCTGTTTTGAAGGCCATGTTTGGAAG 659
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TAAGGAAGTCTTGCCCCCTAAGGAGAAGCTCGTGGCTGTTTTGAAGGCCATGTTTGGAAG 722
Query 660 TGTTACATCTAATTAA 675
||||||||||||||||
Sbjct 723 TGTTACATCTAATTAA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5