BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903801
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09330.1 | Symbols: | Transmembrane amino acid transporter ... 1777 0.0
AT3G09340.1 | Symbols: | Transmembrane amino acid transporter ... 1773 0.0
> AT3G09330.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:2864782-2867230 REVERSE LENGTH=1575
Length=1575
Score = 1777 bits (962), Expect = 0.0
Identities = 1198/1311 (91%), Gaps = 19/1311 (1%)
Strand=Plus/Plus
Query 89 ACGATTCCGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTA 148
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACGATTCAGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTA 181
Query 149 CACCTCCTACGGTCAGTTTCATACATGGGAGAAGTACTCAGACATCATTCACCAGCTCCA 208
|||||||||| |||||||||| || |||||||| ||||||||||||||||||| ||
Sbjct 182 CACCTCCTACAATCAGTTTCATTCACCGGAGAAGTTCTCAGACATCATTCACCAGTTCTG 241
Query 209 TCGCTTCCTTATACAAGAGACGTCACAA-CTCTATTATAACCTCGTTTGCGTCTTCCACA 267
|||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 242 TCGCTTCCTTATACAAGAGACGTC-CAACCTCTATTGCAAATTCGTTTGCGTCTTCCACA 300
Query 268 AGCAAACAACCATTGCTCTCCGAGAAAGACGATGTCTCAGCCAAGTCATTCCTTTCACCT 327
||||||||||| ||||||| ||||||||||||| | | | |||||||||| ||
Sbjct 301 AGCAAACAACCGCTGCTCTCTGAGAAAGACGATG--T------A-TTATTCCTTTCATCT 351
Query 328 CAGCTCAGGTTATCCATCACCGATTTCTCGTATGCAGAACCAAATCTCTGCTCGTTTCCT 387
||| || ||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 352 CAGATCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCT 411
Query 388 CAATCTGTTCTCAATGGAATCAATGTCCTATGTGGAGTAGGTCTACTCACAATGCCTTAC 447
||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 412 CAATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTAC 471
Query 448 GCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTTTTCAT-CTTCGGTATCATCAC 506
|||||||||||||||||||||||||||||||||||||| || || ||| | |||||||||
Sbjct 472 GCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTT-ATCCTTTGCTATCATCAC 530
Query 507 TTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTCCTGACCTCCATACCTA 566
||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 531 TTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTA 590
Query 567 CCCCGACATTGGTCAAGCCGCCTTTGGATTCACCGGCCGCATCATCATCTCCATGCTTCT 626
||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||| |
Sbjct 591 CCCGGACATTGGTCAAGCTGCCTTTGGATTTACCGGCCGCCTCATCATCTCCATACTTTT 650
Query 627 GTACATGGAGTTATACGCATGTTGTGTGGAGTATATAATCATGATGAGCGATAACTTGTC 686
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 651 GTACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATC 710
Query 687 AAGAATTTTCCCCAACATTTCATTAAACATCGTTGGAGTATCTCTAGATTCTTCTCAGAT 746
||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 711 GAGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGAT 770
Query 747 CTTTGCCATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAGAGACCTTAGCTT 806
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 771 CTTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTT 830
Query 807 ACTCTCCTATCTCTCAGCCGGAGGAGTC-TTCTCTTCGATCTTGCTGGCTTTTTGTCTCT 865
|||||||||||||||||||||||||||| || | |||||||||||| ||| |||||||||
Sbjct 831 ACTCTCCTATCTCTCAGCCGGAGGAGTCTTTGT-TTCGATCTTGCTTGCTCTTTGTCTCT 889
Query 866 TCTGGGTTGGGTCGTTTGATGGAGTAGGGTTTCACACTGGTGGACAAGCTCTTGATCTCG 925
|||||||||||||| |||||||||| ||||||||||| |||||| || ||||||||||||
Sbjct 890 TCTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAATCTCTTGATCTCG 949
Query 926 CTAACTTACCTGTCGCTATTGGGATTTTCGGGTTTGGGTTCAGTGGTCACGCGGTTTTCC 985
|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 950 CTAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTAC 1009
Query 986 CCAACATTTACTCGTCCATGAAAGACCCATCCAAGTTTCCTTTGGTGCTCCTCACTAGTT 1045
||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1010 CCAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTT 1069
Query 1046 TTGGTTTCTGCGTATTCTTTTACATTGTCGTGGCGATTTGCGGCTACAGTATGTTTGGTG 1105
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1070 TTGGTTTCTGCGTATTCTTTTACATTGTCGTAGCGATTTGCGGCTACAGTATGTTTGGTG 1129
Query 1106 AAGCCATTCAATCTCAGTTTACACTAAACATGCCACAACAGTTCAC-GTCATCCAAAATC 1164
| ||||||||||| ||||||||||||||||||||||| |||| ||| | |||| ||||||
Sbjct 1130 AGGCCATTCAATCACAGTTTACACTAAACATGCCACAGCAGTACACAG-CATCTAAAATC 1188
Query 1165 GCAGTTTGGACAGCAGTGATAACACCGATGACCAAATACGCGTTATCTCTCACACCGATT 1224
|||||||||||||| ||| || |||||||||||||||||||||| |||||||||| |||
Sbjct 1189 GCAGTTTGGACAGCGGTGGTAGTACCGATGACCAAATACGCGTTAGCTCTCACACCAATT 1248
Query 1225 GTATTAAGTTTAGAAGAACTTATACCGTCTTCAAAAAAGATGAGATCATATGGAGTATCT 1284
|| || || ||||||||||||| | | | ||| | ||||||||||| ||||||||||||
Sbjct 1249 GTGCTAGGTCTAGAAGAACTTATGCTGCCATCAGAGAAGATGAGATCGTATGGAGTATCT 1308
Query 1285 ATGTTTGTTAGAACGATTCTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTC 1344
|| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTC 1368
Query 1345 TTCGCGATCATGGGGGCTTTGATGGGAGATCATTCCTCGCAATGCTTGTCG 1395
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1369 TTCGCGATCATGGGGGCTTTGATGGGA--TCATTCCTCGCAATGCTTGTCG 1417
Score = 248 bits (134), Expect = 1e-64
Identities = 148/155 (95%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 1446 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTGTCTTGAAGGGTAGATTGAGTAAGACACA 1505
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1419 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCA 1478
Query 1506 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1565
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 AATTGGAATATGCGTATTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1538
Query 1566 CTCAGCCATTGGAAGATTAGTAGGAGAATTGAATT 1600
||| ||||||||||||||||||||| || || |||
Sbjct 1539 CTCCGCCATTGGAAGATTAGTAGGAAAACTGGATT 1573
> AT3G09340.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:2868050-2870526 REVERSE LENGTH=1587
Length=1587
Score = 1773 bits (960), Expect = 0.0
Identities = 1197/1310 (91%), Gaps = 21/1310 (2%)
Strand=Plus/Plus
Query 91 GATTCCGC-TCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTAC 149
|||||||| | | ||||||| ||||||| |||| ||||||||| ||||||||||||||||
Sbjct 124 GATTCCGCTTTC-TGGCCTCAGAGTTATAGACACTCTGTGGATCTCTTGACCGGAGTTAC 182
Query 150 ACCTCCTACGGTCAGTTTCATACATGGGAGAAGTACTCAGACATCATTCACCAGCTCCAT 209
|||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||
Sbjct 183 ACCTCCTATGGTCAGTTTCATACAAGGGAGAAGTACTGAGACATCATTCAGTAGCTCCAT 242
Query 210 CGCTTCCTTATACAAGAGACGTCACAA-CTCTATTATAACCTCGTTTGCGTCTTCCACAA 268
||||||||||||||||||||||| ||| ||||||| || ||||||| |||||||||||
Sbjct 243 CGCTTCCTTATACAAGAGACGTC-CAACCTCTATTGCAAATTCGTTTGTGTCTTCCACAA 301
Query 269 GCAAACAACCATTGCTCTCCGAGAAAGACGATGTCTCAGCCAAGTCATTCCTTTCACCTC 328
|||||||||| ||||||| ||||||||||||| | | |||||||||||| |||
Sbjct 302 GCAAACAACCGCTGCTCTCTGAGAAAGACGATG--T------A-TCATTCCTTTCATCTC 352
Query 329 AGCTCAGGTTATCCATCACCGATTTCTCGTATGCAGAACCAAATCTCTGCTCGTTTCCTC 388
|| || ||||||||| ||||||| ||||||||| |||||||||| ||||||||||||| |
Sbjct 353 AGGTCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCCC 412
Query 389 AATCTGTTCTCAATGGAATCAATGTCCTATGTGGAGTAGGTCTACTCACAATGCCTTACG 448
|||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 413 AATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTACG 472
Query 449 CGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTTTTCAT-CTTCGGTATCATCACT 507
||||||||||||||||||||||||||||||||||||| || || ||| | ||||||||||
Sbjct 473 CGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTT-ATCCTTTGCTATCATCACT 531
Query 508 TGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTCCTGACCTCCATACCTAC 567
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 532 TGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTAC 591
Query 568 CCCGACATTGGTCAAGCCGCCTTTGGATTCACCGGCCGCATCATCATCTCCATGCTTCTG 627
|| |||||||||||||| ||||||||||| || |||||| ||||||||||||| ||||||
Sbjct 592 CCGGACATTGGTCAAGCTGCCTTTGGATTTACAGGCCGCCTCATCATCTCCATACTTCTG 651
Query 628 TACATGGAGTTATACGCATGTTGTGTGGAGTATATAATCATGATGAGCGATAACTTGTCA 687
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 652 TACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATCG 711
Query 688 AGAATTTTCCCCAACATTTCATTAAACATCGTTGGAGTATCTCTAGATTCTTCTCAGATC 747
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 712 AGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGATC 771
Query 748 TTTGCCATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAGAGACCTTAGCTTA 807
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 772 TTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTA 831
Query 808 CTCTCCTATCTCTCAGCCGGAGGAGTC-TTCTCTTCGATCTTGCTGGCTTTTTGTCTCTT 866
||||||||||||||||||||||||||| || | |||||||||||| ||| ||||||||||
Sbjct 832 CTCTCCTATCTCTCAGCCGGAGGAGTCTTTGT-TTCGATCTTGCTTGCTCTTTGTCTCTT 890
Query 867 CTGGGTTGGGTCGTTTGATGGAGTAGGGTTTCACACTGGTGGACAAGCTCTTGATCTCGC 926
||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 891 CTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAAGCTCTTGATCTCGC 950
Query 927 TAACTTACCTGTCGCTATTGGGATTTTCGGGTTTGGGTTCAGTGGTCACGCGGTTTTCCC 986
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 951 TAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTACC 1010
Query 987 CAACATTTACTCGTCCATGAAAGACCCATCCAAGTTTCCTTTGGTGCTCCTCACTAGTTT 1046
|| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1011 CAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTTT 1070
Query 1047 TGGTTTCTGCGTATTCTTTTACATTGTCGTGGCGATTTGCGGCTACAGTATGTTTGGTGA 1106
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1071 TGGTTTCTGCGTATTCTTTTACATTGCCGTGGCGATTTGCGGCTACAGTATGTTTGGTGA 1130
Query 1107 AGCCATTCAATCTCAGTTTACACTAAACATGCCACAACAGTTCAC-GTCATCCAAAATCG 1165
||||||||||| |||||||||||||||||||||||||||| ||| | |||| |||||||
Sbjct 1131 GGCCATTCAATCGCAGTTTACACTAAACATGCCACAACAGTACACAG-CATCTAAAATCG 1189
Query 1166 CAGTTTGGACAGCAGTGATAACACCGATGACCAAATACGCGTTATCTCTCACACCGATTG 1225
||||||||||||| ||| || ||| |||||||||||||||||| |||||||||||||||
Sbjct 1190 CAGTTTGGACAGCGGTGGTAGTACCAATGACCAAATACGCGTTAGCTCTCACACCGATTG 1249
Query 1226 TATTAAGTTTAGAAGAACTTATACCGTCTTCAAAAAAGATGAGATCATATGGAGTATCTA 1285
| || |||||||||||||||| ||| | ||| | ||||||||||| |||||||||||||
Sbjct 1250 TGCTAGGTTTAGAAGAACTTATGCCGCCATCAGAGAAGATGAGATCGTATGGAGTATCTA 1309
Query 1286 TGTTTGTTAGAACGATTCTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCT 1345
| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCT 1369
Query 1346 TCGCGATCATGGGGGCTTTGATGGGAGATCATTCCTCGCAATGCTTGTCG 1395
|||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1370 TCGCGATCATGGGGGCTTTGATGGGA--TCATTCCTCGCAACGCTTGTCG 1417
Score = 270 bits (146), Expect = 3e-71
Identities = 152/155 (98%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 1446 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTGTCTTGAAGGGTAGATTGAGTAAGACACA 1505
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1419 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCA 1478
Query 1506 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1538
Query 1566 CTCAGCCATTGGAAGATTAGTAGGAGAATTGAATT 1600
||| |||||||||||||||||||||||||||||||
Sbjct 1539 CTCCGCCATTGGAAGATTAGTAGGAGAATTGAATT 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5