BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903806

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09380.1 | Symbols:  | Protein of unknown function (DUF59) |...   691    0.0  


> AT3G09380.1 | Symbols:  | Protein of unknown function (DUF59) 
| chr3:2885138-2886116 REVERSE LENGTH=598
Length=598

 Score =  691 bits (374),  Expect = 0.0
 Identities = 437/467 (94%), Gaps = 6/467 (1%)
 Strand=Plus/Plus

Query  1    ATGCGTTCAGGAGAGaaaaaaaTGGATTCTGTATTAATCAATGAGAACCCAATTATTTAT  60
            |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct  1    ATGCGTTCAGGAGAGAAAAACATGGATTCTGTATTAACCAATAAGAACCCAATTATTTAT  60

Query  61   CCGAAGAGACCAAGGCGTGT-TCGTACTGATCAGAGCAATACCGATGAGTTTTCATCTAC  119
            ||||||||| || ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct  61   CCGAAGAGAACACGGCGT-TATCGTACTGATCAGAGCAGTACCGATGAGTTTTCATCTAC  119

Query  120  AAATCGTATAAGAGATATCAGAGATCCAGAGCATCCT-AAGCTTTCTTTAGAAGACCTCA  178
            |||||||||||||||||||| |||||||||||||||| || |||||||| ||||| ||||
Sbjct  120  AAATCGTATAAGAGATATCAAAGATCCAGAGCATCCTGAA-CTTTCTTTGGAAGATCTCA  178

Query  179  ATATTCTTACAGAAGAATCAGTTGAAGTTGATGATGACAAGAGTTACGTTAGAATTACAT  238
            || ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  179  ATGTTCTTACTGAAGAATCAGTTGAAGTTGATGATCACAAGAGTTACGTTAGAATTACAT  238

Query  239  TCACTCCAACTCTTCCGCACTGTCACTTGCCAACCCCTATTGGTCTTTGCCTCTTAG-CA  297
            |||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| | 
Sbjct  239  TCACTCCAACTCTTCCTCATTGTCACTTGCCAACCCATATTGGTCTTTGCATCTTAGTC-  297

Query  298  AAACTTGCACAAAGCCTACCTGCTAGATTCAAGGTTGATGTGAGAGTAGCACCAGGGAGT  357
            |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  AAACTTGTGCAAAGCTTACCTGCTAGATTCAAGGTTGATGTGAGAGTAGCACCAGGGAGT  357

Query  358  CATGATAAAGAGAAGACAGTCAATAAACAACTTGGGGATAAAGAACGTGTGGCTGCAGGA  417
            ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  358  CATGATAAAGAGACGACAGTCAATAAACAACTTGGGGATAAAGAACGTGTGACTGCAGCA  417

Query  418  TTAGAGAATCCTGACTTGGTGGCTCTGCTTAATAAAATGATGCAAGT  464
            ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  418  TTAGAGAATCCCGAGTTGGTGGCTCTGCTTAATAAAATGATGCAAGT  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5