BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903809
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family pr... 1123 0.0
AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774 RE... 850 0.0
> AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:26564188-26566853 FORWARD LENGTH=2378
Length=2378
Score = 1123 bits (608), Expect = 0.0
Identities = 671/702 (96%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 25 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 84
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137
Query 85 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 144
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197
Query 145 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 204
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257
Query 205 TTTTGTCGTGATCTGTTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 264
|||| ||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1258 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1317
Query 265 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 324
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1377
Query 325 GAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 383
|||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1378 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 1436
Query 384 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 443
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 1496
Query 444 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 503
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1497 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 1556
Query 504 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 563
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1557 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 1616
Query 564 GGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTCA 623
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1617 GGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTCA 1676
Query 624 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 1736
Query 684 CGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCA 725
||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1737 CGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCA 1778
> AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774
REVERSE LENGTH=2719
Length=2719
Score = 850 bits (460), Expect = 0.0
Identities = 515/542 (95%), Gaps = 2/542 (0%)
Strand=Plus/Minus
Query 25 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 84
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1304 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1245
Query 85 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 144
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1244 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1185
Query 145 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 204
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1184 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1125
Query 205 TTTTGTCGTGATCTGTTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 264
|||| ||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1124 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1065
Query 265 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 324
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1064 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1005
Query 325 GAGAGAATCTTAG-CTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 383
||||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1004 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 946
Query 384 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 443
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 945 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 886
Query 444 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 503
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 885 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 826
Query 504 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 563
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 825 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 766
Query 564 GG 565
||
Sbjct 765 GG 764
Score = 279 bits (151), Expect = 2e-74
Identities = 159/163 (98%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 563 AGGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTC 622
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 684 AGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTC 625
Query 623 AGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAG 565
Query 683 CCGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCA 725
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct 564 CCGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5