BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903839
Length=2928
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40060.1 | Symbols: | Disease resistance protein (NBS-LRR c... 1027 0.0
> AT5G40060.1 | Symbols: | Disease resistance protein (NBS-LRR
class) family | chr5:16034576-16039096 FORWARD LENGTH=3866
Length=3866
Score = 1027 bits (556), Expect = 0.0
Identities = 1493/1931 (77%), Gaps = 121/1931 (6%)
Strand=Plus/Plus
Query 13 TCTTGCGTTTGGGTGTT-CGATGTCTTCCCGAGTTTTAGCGGAGAAGATGTCCG-AAGAA 70
|||||| |||||| || ||| |||||||| || || || |||||||||||||| || ||
Sbjct 31 TCTTGCAATTGGGT-TTACGACGTCTTCCCAAGCTTCAGTGGAGAAGATGTCCGCAA-AA 88
Query 71 CATTCCTCAGTCACCTTCTCTTGGCA-TTGGATCGCAAATTAATCACTTGTTTCAAAGAC 129
|||| ||||| || |||| |||| | || ||||||||| ||||||| ||||||||||
Sbjct 89 CATTTCTCAGCCATCTTCAGTTGGTACTT-GATCGCAAACTAATCACGAGTTTCAAAGAT 147
Query 130 AGTGAGATCCAGAGAAGCCAGTCGATAGGC-CTGGAGCTTGTACATGCGATTAGGGGTTC 188
| ||||||| |||||||||| || ||| || | |||||||| || | ||||| || |||
Sbjct 148 AATGAGATCGAGAGAAGCCAATCAATA-GCTCCAGAGCTTGTCCAAGGGATTAAGGATTC 206
Query 189 AAGGATCGCGATCGTCG-TCTTCTCGAAAATA-TACGCCTCTTCAAGCTGGTGTTTGAAC 246
|||||| || ||||| | ||||||| |||| | |||||||||||||||||||||||||||
Sbjct 207 AAGGATTGCTATCGT-GATCTTCTCCAAAA-ACTACGCCTCTTCAAGCTGGTGTTTGAAC 264
Query 247 GAA-TTGCTGGAGATCGTGAAATGCAAGGAAGAGAAAGGTCAAATGGTGATACCAATCTT 305
|| || ||||||| ||| ||||| ||||| || |||||| | |||||||| | ||
Sbjct 265 GAGCTTT-TGGAGATTGTGTCTTGCAAAGAAGACAAGGGTCAACTAGTGATACCTGTTTT 323
Query 306 CTACGCTTTAGACCCTTCTCATGTCAGGAAACAGACTGGCGACTTTGGAAAGGCGTTTGA 365
||||||||| || ||| ||||||||||||||||||| || || ||||||| ||| |||||
Sbjct 324 CTACGCTTTGGATCCTACTCATGTCAGGAAACAGACCGGTGATTTTGGAATGGCTTTTGA 383
Query 366 AATGATTTG-C-GAGAGCAAAACAGATGA-GTTGCAAATTCAGTGGAGAAGG--GCTTTG 420
|| || ||| | || | ||||||||| || | | ||| || ||||| || |||||
Sbjct 384 AAGGACTTGTCTGA-A-CAAAACAGAGGATGA-GAAAAATCTTTGGAG--GGTAGCTTTA 438
Query 421 ACGGATGTAGCTAATATCCATGGATATCATTCTGAG-AACTGGTATAACGAAGCACACCT 479
|| |||| ||||| || | |||||||||||||| | || ||| |||| |||||| | |
Sbjct 439 ACACATGTCGCTAACATTCTTGGATATCATTCTGCGCAA-TGGAATAATGAAGCAAAAAT 497
Query 480 GATTGAAGAAATCGCCAATGATGTTTTGGGTAAACTTAATAATGTAACACCGTC-AATGG 538
||||||||||||| | |||||||||||| ||||||| ||| | || | || || || ||
Sbjct 498 GATTGAAGAAATC-CAAATGATGTTTTGTGTAAACTGAAT--T-TAGCTCCATCCAA-GG 552
Query 539 AGTTTCTTGACTTTGTTGGAATCGAAGATCATCTGGCCAAGAT--GAGT-CTGTTGTTGT 595
| ||| |||||||||||| | |||| |||||| ||||| |||| || |||||||
Sbjct 553 ATTTTGATGACTTTGTTGGCTTAGAAGTTCATCTAA--AAGATATGAGTTCT-TTGTTGT 609
Query 596 GCTTGGAATCCGAGCAAGTGAGGATGGTTGGGTTATGGGGTCCTTCAGGAATTGGAAAGA 655
||||||| ||| || ||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 610 GCTTGGATTCCAAGGAAGTGAGGATGGTTGGGATATGGGGTCCTTCTGGAATTGGCAAGA 669
Query 656 CTACCATTGCAAGAGCTCTT-TTTATTAGAATCTCTCGTCACTTCCAAAGCAGCGTTT-T 713
|||| ||||||||||| || ||| | || |||||||||||||||| | || || | |
Sbjct 670 CTACTATTGCAAGAGCG-TTATTTGCTCGACTCTCTCGTCACTTCCATTGTAGTGTGTAT 728
Query 714 CATAGACAGGGCTTTTGTATCTAAGACTATGGAAATTTTTAGGGGAGCCAATCCTGACGA 773
|| ||||| || ||||||||||||| ||||| || || ||| ||||||| || |||||
Sbjct 729 -ATTGACAGAGCCTTTGTATCTAAGAGTATGGCAAGTTATAGTAGAGCCAACCCGGACGA 787
Query 774 CTACAACATGAAGCTCCATTTGCAAGAAAA-TTTCCTCTCTGAGA-TTTTAAATAAAAAG 831
||||||||||||| | ||||||||||||| |||| | ||| | | ||||| ||| ||
Sbjct 788 CTACAACATGAAGTTGCATTTGCAAGAAACGTTTC-TGTCT-ACAATTTTAGGGAAACAG 845
Query 832 GATATAAAGGTACATCATTTAGGCGCGGTGGGAGAGAGGCTTAAGCACAAGAAAGTTCTT 891
|||||||| || |||||||||| || ||||||||||||| || ||| |||||||||||
Sbjct 846 AATATAAAGATAGATCATTTAGGTGCCTTGGGAGAGAGGCTAAAACACCAGAAAGTTCTT 905
Query 892 ATAGT-ACTTGATGATTTGGATGATCAAATAGTGCT-AGATGCCTTGGTCGG-TGGAACT 948
|| | | |||||||||| ||| | ||| | ||||| | | ||||||| ||| | || |
Sbjct 906 TTATTTA-TTGATGATTTAGATCAACAAGTGGTGCTTA-ACGCCTTGG-CGGGTCAAATT 962
Query 949 CAATGGTTTGGATGTGGGAGCAGGATCCTTGTGATTACAAAAGATAAGCATCTTCTAAGA 1008
|||||||||||| ||||||| || ||| ||||| ||||||| |||||||||||||||| |
Sbjct 963 CAATGGTTTGGAAGTGGGAGTAGAATCATTGTGGTTACAAATGATAAGCATCTTCTAATA 1022
Query 1009 GCTCATGGGATTGATCGTATTTATGAGGTCGGTCTCCCTTCTCATA-AACTAGCTCTAGA 1067
| ||||||||||| || || |||| ||||||| ||| | | |||| || || ||
Sbjct 1023 TCCCATGGGATTGAAAACATATACCAGGTTTGTCTCCCATCTAA-AGAACTCGCCCTTGA 1081
Query 1068 GATGTTTTGCCAATATGCTTTCAGGCAAAACTCTCCACGTGAGGGGTTTGCA-GA-GCTT 1125
|||||| || | ||||||||| ||||||||| |||||| ||| || || || || |||
Sbjct 1082 GATGTTATGTCGATATGCTTTTAGGCAAAACACTCCACCTGATGGCTT--CAAGAAGCTG 1139
Query 1126 GCT-TCTGAAGTCACAAAAGG--TGCGGGTAATCTTCCTTTGGCTCTTAACGTTTTTGGG 1182
|| | |||||| | || ||| |||| ||||||||||| |||||||||| | ||
Sbjct 1140 GCAGT-TGAAGTTGTGA--GGCATGCAGGTATTCTTCCTTTGGGTCTTAACGTTCTAGG- 1195
Query 1183 TT-GTATTTGCGGGGGAGGGACATAGAGG-ATTGGTTGGATATGTTGCCTAGGCTTCGGA 1240
|| |||||||||||||||| ||| | ||| ||||| |||||||| | || |||||||| |
Sbjct 1196 TTCGTATTTGCGGGGGAGGAACAAA-AGGTATTGGATGGATATGCTACCGAGGCTTCGAA 1254
Query 1241 AAGGACCCTACGGGAAAATTGAGAAAGCACTTAGAGTTAGCTATGACGGGTTAGG-TAGC 1299
|||| | | |||||||| |||| || || |||||| ||||||| ||||| || || |
Sbjct 1255 AAGGTCTAGATGGGAAAATACAGAAGGCTCTAAGAGTTGGCTATGATGGGTT-GGATAAC 1313
Query 1300 AAAGAAGATAAAGCAATATTTTGTCACATTGCATGTCTTTTCAATGGTATG-GAA-GCCA 1357
||| ||||| |||| |||||| |||| || ||||||||||||||| | || ||| | ||
Sbjct 1314 AAAAAAGATGAAGCTATATTTCGTCATATCGCATGTCTTTTCAATT-T-TGAGAAAGTCA 1371
Query 1358 ATGACATCAAGCTGTTACTTGCGGATAGTGACTTGGAAGTT-AATATCGGGCTTAAAAAC 1416
||||||| | |||| | || ||||||||||||||| || || ||||| || ||| |||||
Sbjct 1372 ATGACATTAGGCTGCTGCTAGCGGATAGTGACTTG-AATTTTAATATTGGTCTTGAAAAC 1430
Query 1417 TTAATTGATAACTCCCTCAT-ACATGAAAGAGGGAGTACTGTACATATACATTGTATGGT 1475
||| | ||||| |||||| | | ||| |||| | || ||| | || |||||| || |
Sbjct 1431 TTAGTGGATAAGTCCCTCGTTA-ATGTAAGATCAAATATTGTGGAGATGCATTGTTTGCT 1489
Query 1476 ACAAGAAATGGGTAAGGAAATCATCCGTA-CACAGTCCAACAAGCCCAGAGAACGGGAAT 1534
|||||||||||||| ||||||| |||| | |||||||||| || | ||||||| ||||
Sbjct 1490 ACAAGAAATGGGTAGGGAAATCGTCCG-AGCACAGTCCAATGAGGCTGGAGAACGTGAAT 1548
Query 1535 TCCTGGTGGATTCTA-AGGATAT-TGGCGATGTATTTAATGATACCTCT-GGTGCTAAGA 1591
|||| ||||| | | ||||||| || ||||||| || |||||| | | ||| | || |
Sbjct 1549 TCCTTATGGATAC-AGAGGATATATG-CGATGTACTTGATGATAA-TATTGGTACAAAAA 1605
Query 1592 AGGTTTTGGGTTTATCATT-GAGTCTAGCA-GAGTTTGAT-A--AGTTGCACATAGAT-A 1645
|| | || ||| ||||| | || | ||| | ||| ||||| | || || | || || |
Sbjct 1606 AGATGTTAGGTATATCACTAGA-TGTAG-ATGAGATTGATCATGAGCTGAATGTACATGA 1663
Query 1646 -AAAGGGCCTT-CAAAAGGATGCGTAATCTACGTTTTCTTAGA-ATCTA---TGAGG-AC 1698
|||| | || ||| ||||||||||||| |||||||| | | || || | ||| |
Sbjct 1664 GAAAG--CATTTCAAG-GGATGCGTAATCTTCGTTTTCTAA-ACATTTACACTAAGGCAT 1719
Query 1699 TCATTGGACTTG-CATAACCAAGTCAGATTGCACTTACCAGGAGGCCTC-AGCTATTTTC 1756
| || | | | || || || |||||||||||||||| | | | | | |||||| |
Sbjct 1720 TGAT-GT-CAGGGCAAAA--AA-TCAGATTGCACTTACCCGAAAACTTTGA-CTATTTGC 1773
Query 1757 CCCCAAAGCTCAAGTTACTCTGTTGGGATGGATATCCAATGCGAAGTTTGCCAGCTAGCT 1816
| || ||||| || || | |||||||| ||| |||||| || || | || ||||||
Sbjct 1774 CGCCTAAGCTTAAACTATTATGTTGGGACAAATACCCAATGAGATGTCTACCTTCTAGCT 1833
Query 1817 TTCGTGCTGAACA--TC-TTAATGTGCTCAGAATGCG-GAACAGCAAGCTCGAGAAACTA 1872
||||| ||||| | || |||| | |||| ||||| || ||| |||| ||||| |
Sbjct 1834 TTCGTCCTGAAAACCTCGTTAA-G--CTCAAAATGCAAGAG-AGCGAGCTTGAGAAGTTG 1889
Query 1873 TGGGAAGGAGT 1883
|||||||||||
Sbjct 1890 TGGGAAGGAGT 1900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145534301643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5