BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903839 Length=2928 Score E Sequences producing significant alignments: (Bits) Value AT5G40060.1 | Symbols: | Disease resistance protein (NBS-LRR c... 1027 0.0 > AT5G40060.1 | Symbols: | Disease resistance protein (NBS-LRR class) family | chr5:16034576-16039096 FORWARD LENGTH=3866 Length=3866 Score = 1027 bits (556), Expect = 0.0 Identities = 1493/1931 (77%), Gaps = 121/1931 (6%) Strand=Plus/Plus Query 13 TCTTGCGTTTGGGTGTT-CGATGTCTTCCCGAGTTTTAGCGGAGAAGATGTCCG-AAGAA 70 |||||| |||||| || ||| |||||||| || || || |||||||||||||| || || Sbjct 31 TCTTGCAATTGGGT-TTACGACGTCTTCCCAAGCTTCAGTGGAGAAGATGTCCGCAA-AA 88 Query 71 CATTCCTCAGTCACCTTCTCTTGGCA-TTGGATCGCAAATTAATCACTTGTTTCAAAGAC 129 |||| ||||| || |||| |||| | || ||||||||| ||||||| |||||||||| Sbjct 89 CATTTCTCAGCCATCTTCAGTTGGTACTT-GATCGCAAACTAATCACGAGTTTCAAAGAT 147 Query 130 AGTGAGATCCAGAGAAGCCAGTCGATAGGC-CTGGAGCTTGTACATGCGATTAGGGGTTC 188 | ||||||| |||||||||| || ||| || | |||||||| || | ||||| || ||| Sbjct 148 AATGAGATCGAGAGAAGCCAATCAATA-GCTCCAGAGCTTGTCCAAGGGATTAAGGATTC 206 Query 189 AAGGATCGCGATCGTCG-TCTTCTCGAAAATA-TACGCCTCTTCAAGCTGGTGTTTGAAC 246 |||||| || ||||| | ||||||| |||| | ||||||||||||||||||||||||||| Sbjct 207 AAGGATTGCTATCGT-GATCTTCTCCAAAA-ACTACGCCTCTTCAAGCTGGTGTTTGAAC 264 Query 247 GAA-TTGCTGGAGATCGTGAAATGCAAGGAAGAGAAAGGTCAAATGGTGATACCAATCTT 305 || || ||||||| ||| ||||| ||||| || |||||| | |||||||| | || Sbjct 265 GAGCTTT-TGGAGATTGTGTCTTGCAAAGAAGACAAGGGTCAACTAGTGATACCTGTTTT 323 Query 306 CTACGCTTTAGACCCTTCTCATGTCAGGAAACAGACTGGCGACTTTGGAAAGGCGTTTGA 365 ||||||||| || ||| ||||||||||||||||||| || || ||||||| ||| ||||| Sbjct 324 CTACGCTTTGGATCCTACTCATGTCAGGAAACAGACCGGTGATTTTGGAATGGCTTTTGA 383 Query 366 AATGATTTG-C-GAGAGCAAAACAGATGA-GTTGCAAATTCAGTGGAGAAGG--GCTTTG 420 || || ||| | || | ||||||||| || | | ||| || ||||| || ||||| Sbjct 384 AAGGACTTGTCTGA-A-CAAAACAGAGGATGA-GAAAAATCTTTGGAG--GGTAGCTTTA 438 Query 421 ACGGATGTAGCTAATATCCATGGATATCATTCTGAG-AACTGGTATAACGAAGCACACCT 479 || |||| ||||| || | |||||||||||||| | || ||| |||| |||||| | | Sbjct 439 ACACATGTCGCTAACATTCTTGGATATCATTCTGCGCAA-TGGAATAATGAAGCAAAAAT 497 Query 480 GATTGAAGAAATCGCCAATGATGTTTTGGGTAAACTTAATAATGTAACACCGTC-AATGG 538 ||||||||||||| | |||||||||||| ||||||| ||| | || | || || || || Sbjct 498 GATTGAAGAAATC-CAAATGATGTTTTGTGTAAACTGAAT--T-TAGCTCCATCCAA-GG 552 Query 539 AGTTTCTTGACTTTGTTGGAATCGAAGATCATCTGGCCAAGAT--GAGT-CTGTTGTTGT 595 | ||| |||||||||||| | |||| |||||| ||||| |||| || ||||||| Sbjct 553 ATTTTGATGACTTTGTTGGCTTAGAAGTTCATCTAA--AAGATATGAGTTCT-TTGTTGT 609 Query 596 GCTTGGAATCCGAGCAAGTGAGGATGGTTGGGTTATGGGGTCCTTCAGGAATTGGAAAGA 655 ||||||| ||| || ||||||||||||||||| ||||||||||||| |||||||| |||| Sbjct 610 GCTTGGATTCCAAGGAAGTGAGGATGGTTGGGATATGGGGTCCTTCTGGAATTGGCAAGA 669 Query 656 CTACCATTGCAAGAGCTCTT-TTTATTAGAATCTCTCGTCACTTCCAAAGCAGCGTTT-T 713 |||| ||||||||||| || ||| | || |||||||||||||||| | || || | | Sbjct 670 CTACTATTGCAAGAGCG-TTATTTGCTCGACTCTCTCGTCACTTCCATTGTAGTGTGTAT 728 Query 714 CATAGACAGGGCTTTTGTATCTAAGACTATGGAAATTTTTAGGGGAGCCAATCCTGACGA 773 || ||||| || ||||||||||||| ||||| || || ||| ||||||| || ||||| Sbjct 729 -ATTGACAGAGCCTTTGTATCTAAGAGTATGGCAAGTTATAGTAGAGCCAACCCGGACGA 787 Query 774 CTACAACATGAAGCTCCATTTGCAAGAAAA-TTTCCTCTCTGAGA-TTTTAAATAAAAAG 831 ||||||||||||| | ||||||||||||| |||| | ||| | | ||||| ||| || Sbjct 788 CTACAACATGAAGTTGCATTTGCAAGAAACGTTTC-TGTCT-ACAATTTTAGGGAAACAG 845 Query 832 GATATAAAGGTACATCATTTAGGCGCGGTGGGAGAGAGGCTTAAGCACAAGAAAGTTCTT 891 |||||||| || |||||||||| || ||||||||||||| || ||| ||||||||||| Sbjct 846 AATATAAAGATAGATCATTTAGGTGCCTTGGGAGAGAGGCTAAAACACCAGAAAGTTCTT 905 Query 892 ATAGT-ACTTGATGATTTGGATGATCAAATAGTGCT-AGATGCCTTGGTCGG-TGGAACT 948 || | | |||||||||| ||| | ||| | ||||| | | ||||||| ||| | || | Sbjct 906 TTATTTA-TTGATGATTTAGATCAACAAGTGGTGCTTA-ACGCCTTGG-CGGGTCAAATT 962 Query 949 CAATGGTTTGGATGTGGGAGCAGGATCCTTGTGATTACAAAAGATAAGCATCTTCTAAGA 1008 |||||||||||| ||||||| || ||| ||||| ||||||| |||||||||||||||| | Sbjct 963 CAATGGTTTGGAAGTGGGAGTAGAATCATTGTGGTTACAAATGATAAGCATCTTCTAATA 1022 Query 1009 GCTCATGGGATTGATCGTATTTATGAGGTCGGTCTCCCTTCTCATA-AACTAGCTCTAGA 1067 | ||||||||||| || || |||| ||||||| ||| | | |||| || || || Sbjct 1023 TCCCATGGGATTGAAAACATATACCAGGTTTGTCTCCCATCTAA-AGAACTCGCCCTTGA 1081 Query 1068 GATGTTTTGCCAATATGCTTTCAGGCAAAACTCTCCACGTGAGGGGTTTGCA-GA-GCTT 1125 |||||| || | ||||||||| ||||||||| |||||| ||| || || || || ||| Sbjct 1082 GATGTTATGTCGATATGCTTTTAGGCAAAACACTCCACCTGATGGCTT--CAAGAAGCTG 1139 Query 1126 GCT-TCTGAAGTCACAAAAGG--TGCGGGTAATCTTCCTTTGGCTCTTAACGTTTTTGGG 1182 || | |||||| | || ||| |||| ||||||||||| |||||||||| | || Sbjct 1140 GCAGT-TGAAGTTGTGA--GGCATGCAGGTATTCTTCCTTTGGGTCTTAACGTTCTAGG- 1195 Query 1183 TT-GTATTTGCGGGGGAGGGACATAGAGG-ATTGGTTGGATATGTTGCCTAGGCTTCGGA 1240 || |||||||||||||||| ||| | ||| ||||| |||||||| | || |||||||| | Sbjct 1196 TTCGTATTTGCGGGGGAGGAACAAA-AGGTATTGGATGGATATGCTACCGAGGCTTCGAA 1254 Query 1241 AAGGACCCTACGGGAAAATTGAGAAAGCACTTAGAGTTAGCTATGACGGGTTAGG-TAGC 1299 |||| | | |||||||| |||| || || |||||| ||||||| ||||| || || | Sbjct 1255 AAGGTCTAGATGGGAAAATACAGAAGGCTCTAAGAGTTGGCTATGATGGGTT-GGATAAC 1313 Query 1300 AAAGAAGATAAAGCAATATTTTGTCACATTGCATGTCTTTTCAATGGTATG-GAA-GCCA 1357 ||| ||||| |||| |||||| |||| || ||||||||||||||| | || ||| | || Sbjct 1314 AAAAAAGATGAAGCTATATTTCGTCATATCGCATGTCTTTTCAATT-T-TGAGAAAGTCA 1371 Query 1358 ATGACATCAAGCTGTTACTTGCGGATAGTGACTTGGAAGTT-AATATCGGGCTTAAAAAC 1416 ||||||| | |||| | || ||||||||||||||| || || ||||| || ||| ||||| Sbjct 1372 ATGACATTAGGCTGCTGCTAGCGGATAGTGACTTG-AATTTTAATATTGGTCTTGAAAAC 1430 Query 1417 TTAATTGATAACTCCCTCAT-ACATGAAAGAGGGAGTACTGTACATATACATTGTATGGT 1475 ||| | ||||| |||||| | | ||| |||| | || ||| | || |||||| || | Sbjct 1431 TTAGTGGATAAGTCCCTCGTTA-ATGTAAGATCAAATATTGTGGAGATGCATTGTTTGCT 1489 Query 1476 ACAAGAAATGGGTAAGGAAATCATCCGTA-CACAGTCCAACAAGCCCAGAGAACGGGAAT 1534 |||||||||||||| ||||||| |||| | |||||||||| || | ||||||| |||| Sbjct 1490 ACAAGAAATGGGTAGGGAAATCGTCCG-AGCACAGTCCAATGAGGCTGGAGAACGTGAAT 1548 Query 1535 TCCTGGTGGATTCTA-AGGATAT-TGGCGATGTATTTAATGATACCTCT-GGTGCTAAGA 1591 |||| ||||| | | ||||||| || ||||||| || |||||| | | ||| | || | Sbjct 1549 TCCTTATGGATAC-AGAGGATATATG-CGATGTACTTGATGATAA-TATTGGTACAAAAA 1605 Query 1592 AGGTTTTGGGTTTATCATT-GAGTCTAGCA-GAGTTTGAT-A--AGTTGCACATAGAT-A 1645 || | || ||| ||||| | || | ||| | ||| ||||| | || || | || || | Sbjct 1606 AGATGTTAGGTATATCACTAGA-TGTAG-ATGAGATTGATCATGAGCTGAATGTACATGA 1663 Query 1646 -AAAGGGCCTT-CAAAAGGATGCGTAATCTACGTTTTCTTAGA-ATCTA---TGAGG-AC 1698 |||| | || ||| ||||||||||||| |||||||| | | || || | ||| | Sbjct 1664 GAAAG--CATTTCAAG-GGATGCGTAATCTTCGTTTTCTAA-ACATTTACACTAAGGCAT 1719 Query 1699 TCATTGGACTTG-CATAACCAAGTCAGATTGCACTTACCAGGAGGCCTC-AGCTATTTTC 1756 | || | | | || || || |||||||||||||||| | | | | | |||||| | Sbjct 1720 TGAT-GT-CAGGGCAAAA--AA-TCAGATTGCACTTACCCGAAAACTTTGA-CTATTTGC 1773 Query 1757 CCCCAAAGCTCAAGTTACTCTGTTGGGATGGATATCCAATGCGAAGTTTGCCAGCTAGCT 1816 | || ||||| || || | |||||||| ||| |||||| || || | || |||||| Sbjct 1774 CGCCTAAGCTTAAACTATTATGTTGGGACAAATACCCAATGAGATGTCTACCTTCTAGCT 1833 Query 1817 TTCGTGCTGAACA--TC-TTAATGTGCTCAGAATGCG-GAACAGCAAGCTCGAGAAACTA 1872 ||||| ||||| | || |||| | |||| ||||| || ||| |||| ||||| | Sbjct 1834 TTCGTCCTGAAAACCTCGTTAA-G--CTCAAAATGCAAGAG-AGCGAGCTTGAGAAGTTG 1889 Query 1873 TGGGAAGGAGT 1883 ||||||||||| Sbjct 1890 TGGGAAGGAGT 1900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 145534301643 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5