BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903840
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09700.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 593 3e-169
AT5G03030.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 298 2e-80
> AT3G09700.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:2974802-2976277 REVERSE LENGTH=769
Length=769
Score = 593 bits (321), Expect = 3e-169
Identities = 333/339 (98%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGCAGCGATACTTGCAGGCgctgctgttgctgctgctgcttatgctgGTAAATAT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 ATGGTTGCAGCGATAATTGCAGGCGCTGCTGTTGCTGCTGCTGCTTATGCTGGTAAATAT 198
Query 61 GGATTAGAGGCATGGCAAGCGTTTAAGCTGAGACCAGTTAGGCCTAGAATGCGAAAATTC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GGAATAGAGGCATGGCAAGCGTTTAAGCTGAGACCAGTTAGGCCTAGAATGCGAAAATTC 258
Query 121 TATGAAGGTGGTTTCCAAGCTACTATGAATCGGAGAGAAGCTGCTCTAATTCTCGGTGTT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 TATGAAGGTGGTTTCCAAGCTACTATGAATCGAAGAGAAGCTGCTCTAATTCTCGGTGTT 318
Query 181 AGGGAGAGTGTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTGGCAAAT 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 319 AGGGAGAGTGTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGTAGAGTGATGGTGGCTAAT 378
Query 241 CATCCAGATGCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CATCCAGATGCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATG 438
Query 301 ATGCTTGGCAAAACCAAGAACTCTGGTTCTGCGTTTTGA 339
|||||||| ||||||||||||||||||||||||||||||
Sbjct 439 ATGCTTGGAAAAACCAAGAACTCTGGTTCTGCGTTTTGA 477
> AT5G03030.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:708318-709703 REVERSE LENGTH=690
Length=690
Score = 298 bits (161), Expect = 2e-80
Identities = 278/332 (84%), Gaps = 18/332 (5%)
Strand=Plus/Plus
Query 17 TTGCAGGCgctgctgttgctgctgctgct-tatgctgGTAAATATGGAT-TAGAGGCATG 74
||||||| |||||||| |||||||||||| | |||||||| |||||| | || ||| ||
Sbjct 207 TTGCAGGTGCTGCTGTAGCTGCTGCTGCTGT-TGCTGGTAGATATGG-TATATTGGCTTG 264
Query 75 GCAAGCGTTT-AA-GCTGAGACC-AGTTAG-GCCTAGAATGCGAAAATTCTATGAAGGTG 130
|||||| ||| || || ||||| | | | ||||||||||| | || ||||||||||
Sbjct 265 GCAAGC-TTTCAAGGC-AAGACCTCG-T-GTTCCTAGAATGCGCAGGTTTTATGAAGGTG 320
Query 131 GTTTCC-AAGCTACTATGAATCGGAGAGAAGCTGCTCTAATTCTCGGTGTTAGGGAGAGT 189
|||||| ||| | |||||| || ||||||||||||| ||||| |||||||||||||||
Sbjct 321 GTTTCCAAAG-TTCTATGACCCGCCGAGAAGCTGCTCTCATTCTTGGTGTTAGGGAGAGT 379
Query 190 GTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTGGCAAATCATCCAGAT 249
|| | |||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 380 GTTGTGGCAGATAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTTGCAAATCACCCAGAC 439
Query 250 GCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATGATGCTTGGC 309
|| ||||| || || || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 440 GCTGGAGGCAGTCACTATCTTGCTTCTAAGATCAATGAAGCCAAAGATATGATGCTTGG- 498
Query 310 AAAA-CCAAGAACT-CTGGTTCTGCGTTTTGA 339
|||| |||| ||| | |||||||| ||||||
Sbjct 499 AAAATCCAACAACAGC-GGTTCTGCCTTTTGA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5