BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903841
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09710.2 | Symbols: IQD1 | IQ-domain 1 | chr3:2976605-297938... 1072 0.0
AT5G03040.1 | Symbols: iqd2 | IQ-domain 2 | chr5:710102-712788 ... 486 2e-136
> AT3G09710.2 | Symbols: IQD1 | IQ-domain 1 | chr3:2976605-2979389
REVERSE LENGTH=1939
Length=1939
Score = 1072 bits (580), Expect = 0.0
Identities = 719/786 (91%), Gaps = 9/786 (1%)
Strand=Plus/Plus
Query 589 AATGGGGGTAATTGGAACGACAGCAATCAGTCGAAGGAACAGGTTGAAGCGGGTATGTTG 648
|||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||
Sbjct 934 AATGGGGGTAATTGGAACTACAGCAATCAGTCAAAGGAACAAGTTGAAGCAGGTATGTTG 993
Query 649 CACAAGTACGAGGCGACAATGAGAAGGGAAAGGGCATTGGCATATGCATTCACACATCAG 708
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 994 CACAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATTCACACATCAG 1053
Query 709 CAAAATTTGAAGAGCAACTCGAAAACTGCAAATCCGATGTTCATGGATCCCAGCAACCCG 768
||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1054 CAAAACTTGAAGAGCTTCTCGAAAACTGCAAATCCGATGTTCATGGATCCTAGCAACCCG 1113
Query 769 ACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCATGGGAGAGTTCAGAG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCATGGGAGAGTTCAGAG 1173
Query 829 AAAGaacaaaacacaaccaacaacaacaacaacGAAAACTCCTCAGTCAAGAACTCGACT 888
||||||| ||| || | | | || ||||||||| |||||||| || ||||||||||||
Sbjct 1174 AAAGAAC-AAA-AC-A-C--C-AC--CAACAACGACAACTCCTCGGTTAAGAACTCGACT 1224
Query 889 AATCGTAATTCCCATGGAGGAGAAACCGCAAAATCTTTGAACCGCAACAAACTCAATATC 948
|| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 1225 AACCGTAATTCCCAAGGAGGAGAAACAGCAAAATCTTCAAACCGCAACAAACTCAATAGC 1284
Query 949 TCGACTCAATCCAATACCCCATCATCATCATCCACTGCCACCAGAAACCCGAGAAAGAAG 1008
|||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1285 TCGACTAAACCCAATACCCCATCAGCATCATCCACAGCCACCAGAAACCCGAGAAAGAAG 1344
Query 1009 AGGCCAATTCCATCGCCCATAAAATCCAAAACCAGTGATGATGAGGCCAAGAGCTCGGAG 1068
|||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1345 CGGCCCATCCCATCGTCCATAAAATCCAAAAGCAGTGATGATGAGGCCAAGAGCTCGGAG 1404
Query 1069 AAGAACCGTAGGCACAGCACTGCAAGGTCATCAGTTAGTGATGACGAGACCCTGACTAGC 1128
| ||||||||||| ||||| ||| ||| |||| |||||||||||||||||||||| ||||
Sbjct 1405 AGGAACCGTAGGCCCAGCATTGCTAGGCCATCGGTTAGTGATGACGAGACCCTGAGTAGC 1464
Query 1129 TCAACAGCTAAACGTAGTAACCATCTGATTCCCACCACAAAACCAGTACGAGGCAAGCCC 1188
||||| |||| ||||||| | |||||||||| || |||||| ||| |||||||||||||
Sbjct 1465 TCAACTGCTAGGCGTAGTAGCAATCTGATTCCTACAACAAAATCAGCACGAGGCAAGCCC 1524
Query 1189 AAGCCCCAGAGCTCATCACGTGCAGCGGTGACCACAACCACAACGGAGGAAAACAGTGTA 1248
||| | || | ||||||||| | ||||||||||||| ||||||| ||||||| |||| ||
Sbjct 1525 AAGTCTCAAACCTCATCACGAGTAGCGGTGACCACATCCACAACAGAGGAAAGCAGTATA 1584
Query 1249 TTACCGGAGAAAGCACCAGCAAAGAAACGGCTCTCCACCTCGGCTTCACCTGCACCCAAA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 TTACCGGAGAAAGCACCAGCAAAGAAACGGCTCTCCACCTCGGCTTCACCTGCACCCAAA 1644
Query 1309 CCCAGACGATCCTCAGCCCCACCAAAGGTGGAAAAAGGCGCTCTCAAAGCAGAGAGAACG 1368
|||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 1645 CCCAGACGATCCTCCGCCCCGCCAAAGGTGGAAAAAGGCGTTCTCAAGGCAGAGAGAACG 1704
Query 1369 CCGTGA 1374
||||||
Sbjct 1705 CCGTGA 1710
Score = 915 bits (495), Expect = 0.0
Identities = 558/589 (95%), Gaps = 2/589 (0%)
Strand=Plus/Plus
Query 1 ATGGTTAAAAAGGCGAAATGGCTCAAGAACGTTAAGAAGGCTTTTAGCCCAGATTCAAAG 60
||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 304 ATGGTTAAAAAAGCGAAATGGCTGAAAAACGTTAAAAAGGCTTTTAGCCCAGATTCAAAG 363
Query 61 AAGTTGAAACATGAATCTGTTGAGTGTCAAGATAGTGTAATCTCTTACCCTGTATTGATA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 364 AAGTTGAAACACGAATCTGTTGAGTGTCAAGATAGTGTAATCTCTTACCCTGTCTTGATA 423
Query 121 GCCACATCCAGAAGTTCTCCTCCTCAGTTTGAAGTTAGAGTTGATGAGGTCAACTATGAA 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GCCACATCCAGAAGTTCTTCTCCTCAGTTTGAAGTTAGAGTTGATGAGGTCAACTATGAA 483
Query 181 CAGAAGAAGAATCTGTGTCCTCCTTCTTCAGTTTCTGTGACTCCTACTGTTGCACATGTT 240
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 484 CAGAAGAAGAATCTGTATCCTCCTTCTTCAGATTCTGTGACTGCTACTGTTGCACATGTT 543
Query 241 CTTGTAGATTCACCTCCATCTTCTCCTGAATCTGTTCATCAAGCTATAGTTGATGATAGG 300
||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 544 CTTGTAGATTCTCCTCCATCTTCTCCTGAATCTGTCCATCAAGCTATAGTTGTTAATAGA 603
Query 301 TTTGCAGGCAAGTCAAAGGAAGATGCAGCTGCCATCTTAATTCAGTCTACGTTTAGGGGC 360
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 604 TTTGCAGGCAAGTCAAAGGAAGAAGCAGCTGCCATCTTAATCCAGTCTACGTTTAGGGGC 663
Query 361 AATTTGTCTTTAAGTCTTTCTT-GTGTAATGAGGGGGCAGGAAAGACTTAAGTTACTGAT 419
||||| | ||| || | || ||||||||||||||||||||||||||||||||
Sbjct 664 CATTTGGCAAGAAGAGAATCGCAG-GTGATGAGGGGGCAGGAAAGACTTAAGTTACTGAT 722
Query 420 GGAAGGATCGGTTGTACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCTCTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GGAAGGATCGGTTGTACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCTCTC 782
Query 480 TCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCG 842
Query 540 ACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAG 588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAG 891
> AT5G03040.1 | Symbols: iqd2 | IQ-domain 2 | chr5:710102-712788
REVERSE LENGTH=1911
Length=1911
Score = 486 bits (263), Expect = 2e-136
Identities = 465/561 (83%), Gaps = 20/561 (4%)
Strand=Plus/Plus
Query 301 TTTGCAGGCAAGTCAAAGGAAGATGCAGCTGCCATCTTAATTCAGTCTACGTTTAGGGGC 360
||||| || |||||||| ||||| || ||||| ||||| || ||| ||| ||||| ||
Sbjct 569 TTTGCTGGAAAGTCAAACGAAGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGT 628
Query 361 AATTTGTC-TTTA-AGTC-TTTCTTGTGTAATGAGGGGGCAGGAAAGACTTAAGTTACTG 417
||||| | | || | || | | | ||||||||| || |||||||||||| ||
Sbjct 629 TATTTGGCAAGGAGAG-CGTTGC--GGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTG 685
Query 418 ATGGAAGGATCGGTTG-TACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCT 476
||||||||||| |||| || | ||||||||||||| |||||| |||||||||||||| ||
Sbjct 686 ATGGAAGGATCTGTTGTTA-AGCGGCAAGCTGCAAATACTCTAAAATGTATGCAGACTCT 744
Query 477 CTCTCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGC 536
||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 745 CTCTCGTGTACAGTCGCAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGC 804
Query 537 TCGACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAGAATGGGGG 596
||| || || ||||| |||||||| ||||| |||||||||| ||||| ||||| ||||
Sbjct 805 TCGCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAGAACGGGGA 864
Query 597 TAATTGGAACGACAGCAATCAGTCGAAGGA-ACAGGTTGAAGCGGGTATGTTGC-A--CA 652
||| ||||| || |||| ||| || ||||| | || |||||||| || |||| | ||
Sbjct 865 TAACTGGAATGATAGCATTCAATCAAAGGAGAAAG-TTGAAGCGA--AT-TTGCTAAGCA 920
Query 653 AGTACGAGGCGACAATGAGAAGGGAAAGGGCATTGGCATATGCATTCACACATCAGCAAA 712
|||||||||| |||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct 921 AGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGCAAA 980
Query 713 ATTTGAAGAGCAACTCGAAAACTGCAAATCCGATGTTCATGGATCCCAGCAACCCGACTT 772
| | ||||| |||||| ||| ||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 981 ACTGGAAGAACAACTCTAAATCTGGAAACCCGATGTTCATGGATCCAAGCAACCCGACAT 1040
Query 773 GGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCA-TGGGAGAGTTCAGAGAAA 831
|||||||||||||||||||||| ||||||||||| ||||| | | ||||||| ||||||
Sbjct 1041 GGGGTTGGAGCTGGTTAGAGAGATGGATGGCTGGTAGGCCACTAG-AGAGTTCCGAGAAA 1099
Query 832 Gaacaaaaca-caaccaacaa 851
||||||| || || | |||||
Sbjct 1100 GAACAAAGCAACAGC-AACAA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5