BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903863
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39460.1 | Symbols: SAMC1, SAMT1 | S-adenosylmethionine carr... 453 3e-127
> AT4G39460.1 | Symbols: SAMC1, SAMT1 | S-adenosylmethionine carrier
1 | chr4:18355993-18358893 REVERSE LENGTH=1188
Length=1188
Score = 453 bits (245), Expect = 3e-127
Identities = 255/260 (98%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1 GCTCTGACCGGAGTAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG 881
Query 61 GGATCAACCAAACAATATCAAAGAATCGTTGACTGTGTTCAAACAATTGTAAGGGAGGAA 120
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 882 GGATCAGCCAAACAATATCAAGGAATCGTTGACTGTGTTCAAACAATTGTAAGAGAGGAA 941
Query 121 GGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGAGCTCCTGCTCTCTTAAAGGGTATTGGGCCAAGAGTGTTGTGGATAGGTATTGGAGGA 1001
Query 181 TCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TCAATCTTCTTTGGTGTCCTCGAGAGCACTAAGAGAACACTTGCACAGAGACGTCCCAAT 1061
Query 241 ACGGTTAAAGAAACCAAAGA 260
||||||||||||||||||||
Sbjct 1062 ACGGTTAAAGAAACCAAAGA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11913456513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5