BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903878

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen...   350    5e-96
  AT3G28940.1 | Symbols:  | AIG2-like (avirulence induced gene) f...   322    1e-87


> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene) 
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 230/250 (92%), Gaps = 2/250 (1%)
 Strand=Plus/Plus

Query  1    ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA  60
            ||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  81   ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA  140

Query  61   CCAGCCGTCGT-AAGTTTGATTCTTGAATGTTCTCCGGTCATCGTCTCCGCTCAACTCCA  119
            |||||||| || || ||| ||||| |||||| |||||||||| || ||||||||||||||
Sbjct  141  CCAGCCGTTGTTAA-TTTAATTCTCGAATGTGCTCCGGTCATGGTTTCCGCTCAACTCCA  199

Query  120  CGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGAA  179
            ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct  200  CGGCTATCACTTGTATAGACTTAAAGGTCGTTTGCATCCATGTATTTCTCCTTCCGACAA  259

Query  180  TGGAGTAATCAACGGCAAGATACTAACTGGATTAACAGATGCTCAGTTAGAGAATTTAGA  239
            |||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  260  TGGATTAATCAATGGCAAGATACTAACTGGATTAACAGATTCTCAGTTAGAGAGTTTAGA  319

Query  240  TATGATTGAA  249
            ||||||||||
Sbjct  320  TATGATTGAA  329


> AT3G28940.1 | Symbols:  | AIG2-like (avirulence induced gene) 
family protein | chr3:10968100-10969387 REVERSE LENGTH=810
Length=810

 Score =  322 bits (174),  Expect = 1e-87
 Identities = 226/251 (90%), Gaps = 4/251 (2%)
 Strand=Plus/Plus

Query  1    ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA  60
            ||||| ||||| ||| |||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct  77   ATGACAAGCTCCGATAAATCTCTGTCGCACGACGTTTTCGTCTACGGCAGTTTCCAAGAA  136

Query  61   CCAGCCGTCGT-AAGTTTGATTCTTGAATGTTCTCCGGTCATCG-TCTCCGCTCAACTCC  118
            ||| ||||||| || | |||| || ||||||||||||||||| | || ||||||||||||
Sbjct  137  CCATCCGTCGTCAA-TCTGATCCTCGAATGTTCTCCGGTCATGGTTC-CCGCTCAACTCC  194

Query  119  ACGGCTATCACTTGTATAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGA  178
            ||||||||||| | |||||||||||||| || || ||| ||||||| |||||||||||||
Sbjct  195  ACGGCTATCACGTATATAGACTCAAAGGTCGCTTACATGCATGTATCTCTCCTTCTGAGA  254

Query  179  ATGGAGTAATCAACGGCAAGATACTAACTGGATTAACAGATGCTCAGTTAGAGAATTTAG  238
            ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct  255  ATGGACTAATCAACGGCAAGATACTAACTGGGTTAACAGATTCTCAGTTAGAGAATTTAG  314

Query  239  ATATGATTGAA  249
            |||||||||||
Sbjct  315  ATATGATTGAA  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5