BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903909
Length=2694
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10310.1 | Symbols: | P-loop nucleoside triphosphate hydrol... 2990 0.0
> AT3G10310.1 | Symbols: | P-loop nucleoside triphosphate hydrolases
superfamily protein with CH (Calponin Homology) domain
| chr3:3190001-3195005 FORWARD LENGTH=2899
Length=2899
Score = 2990 bits (1619), Expect = 0.0
Identities = 1757/1825 (96%), Gaps = 3/1825 (0%)
Strand=Plus/Plus
Query 829 GTTCTCAAGACCTTGTTTATAAAAACGAAGCAGGATTTTAAGGAATTTCAGGTTCATTTG 888
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1037 GTTCTCAAGAACTTGTTTATAAAAACGAAGCAGGATTTTAAGGAATTTCAGGTTTATTTG 1096
Query 889 CAAAGAGATTTGATGGAGCTCGGGAATCAGATGCAAGAGATGTCATCAGCAGCTCAAGGA 948
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 1097 CAAAGAGATTTGATGGAACTAGGGAATCAGATGCAAGAGATGTCATCAGCAGCTCAGGGA 1156
Query 949 TATTACAAAGTGGTGGAAGAGAACCGAAAACTATATAACATGGTGCAAGATCTTAAAGGA 1008
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1157 TATTACAAAGTGGTGGAAGAGAATCGAAAATTATATAACATGGTGCAAGATCTTAAAGGA 1216
Query 1009 AATATAAGAGTGTACTGCAGAGTTAGACCGATCTTCAATAGTGAAATGAACGGAGTAATA 1068
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1217 AATATAAGAGTGTACTGCAGAGTTAGACCGATCTTCAATAGTGAAATGGACGGAGTTATA 1276
Query 1069 GATTATATAGGAAAAGATGGCTCTTTATTTGTTTTGGATCCATCGAAGCCTTATAAAGAT 1128
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1277 GATTATATAGGAAAAGATGGCTCTTTATTCGTTTTGGATCCATCGAAGCCTTATAAAGAT 1336
Query 1129 GCAAGAAAAACTTTTCAATTTAATCAAGTATTTGGTCCAACAGCAAGTCAAGATGATGTA 1188
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1337 GCCAGAAAAACGTTTCAATTTAATCAAGTATTTGGTCCAACAGCAACTCAAGATGATGTA 1396
Query 1189 TTCAGAGAAACGCAACCATTAATCAGATCAGTGATGGATGGTTACAATGTCTGCATTTTC 1248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TTCAGAGAAACACAACCATTAATCAGATCAGTGATGGATGGTTACAATGTCTGCATTTTC 1456
Query 1249 GCTTATGGTCAAACTGGATCAGGGAAGACATACACAATGAGTGGTCCTCCAGGTAGATCA 1308
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1457 GCTTATGGTCAAACGGGATCAGGGAAGACATACACAATGAGTGGTCCTCCAGGCAGATCA 1516
Query 1309 GCTACTGAAATGGGAATAAACTATCTTGCTCTCAGTGATCTCTTTCTGATATATATTCGA 1368
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1517 GCTACTGAAATGGGAATAAACTATCTAGCTCTCAGTGATCTCTTTCTGATATATATACGA 1576
Query 1369 ACTTGTTCCAGCGAGGATGATGGCTTGAGTCTTCCAGATGCTACAATGCATTCTGTGAAT 1428
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1577 ACTTGTTCCAGCGATGATGATGGGTTGAGTCTTCCAGATGCTACAATGCATTCTGTGAAT 1636
Query 1429 TCCACCAAGGATGTCCTTCAGCTGATGGAGGCTGGAGAAGTGAATCGTGCAGTCAGTTCC 1488
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1637 TCTACCAAGGATGTCCTTCAGCTGATGGAGGCTGGTGAAGTGAATCGTGCAGTTAGTTCC 1696
Query 1489 ACATCCATGAACAATCGAAGTAGTCGGTCTCACAGTATTTTTATGGTGCACGTACGTGGG 1548
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1697 ACGTCCATGAATAATCGAAGTAGTCGGTCACACAGTATTTTTATGGTGCACGTACGTGGG 1756
Query 1549 AAAGACACATCTGGGGGAACCCTCCGAAGTTGCTTGCATCTGGTGGATCTTGCAGGGAGC 1608
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1757 AAAGATACATCTGGGGGAACCCTTCGAAGTTGCTTGCATCTGGTGGATCTTGCAGGGAGC 1816
Query 1609 GAGAGAGTAGATAAATCAGAGGTTACTGGAGACAGACTTAAGGAAGCACAGTATATCAAC 1668
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1817 GAGAGAGTAGATAAATCAGAGGTTACTGGAGACAGACTCAAAGAAGCACAATATATCAAC 1876
Query 1669 AAATCTCTTTCTTGTCTCGGAGATGTGATTTCTGCATTGGCTCAGAAGAATTCTCACATC 1728
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1877 AAATCTCTTTCTTGTCTCGGAGATGTCATTTCTGCATTGGCTCAGAAGAATTCTCACATC 1936
Query 1729 CCCTACCGAAACAGCAAGTTGACTCTTCTACTTCAAGACTCATTAGGAGGACAAGCCAAA 1788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 CCATACCGAAACAGCAAGTTGACTCTTCTACTTCAAGACTCATTAGGAGGACAAGCCAAA 1996
Query 1789 ACATTAATGTTTGCTCATTTGAGTCCTGAGGAAGACTCCTTTGGGGAAACAATCAGTACT 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 ACATTAATGTTTGCTCATTTGAGTCCTGAGGAAGACTCCTTTGGGGAAACAATCAGTACT 2056
Query 1849 TTGAAATTCGCACAAAGAGTTTCAACAGTCGAACTTGGAGCTGCTCGTGCACACAAAGAG 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 TTGAAATTCGCACAAAGAGTTTCAACAGTCGAACTTGGAGCTGCTCGTGCACACAAAGAG 2116
Query 1909 ACTAGAGAGGTTATGCATCTCAAGGAGCAGATTGAAAACCTCAAGAAGGCTTTGGGTACC 1968
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2117 ACTAGAGAGGTTATGCATCTCAAGGAGCAGATTGAAAACCTGAAGAGGGCTTTGGGTACC 2176
Query 1969 GAAGAATATAATAATGTTTTCAACAGTGGAGCAAAGGAGATAAAATCTCCTTACAGCAGG 2028
||||||| |||||||||| |||| | | | |||||||||||||||| |||| |||||||
Sbjct 2177 GAAGAATGGAATAATGTTTCCAAC-G-G-ATCAAAGGAGATAAAATCACCTTTCAGCAGG 2233
Query 2029 CCATTTGCAACAACAGAGAGAACTCCTCCACGTCTCAGAAGATTAAGCATCGAAAACTGT 2088
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2234 CCAATCGCAACAACAGAGAGAACTCCTCCACGTCTCAGAAGGTTAAGCATCGAAAACTGT 2293
Query 2089 AGCAACACAAAGGCAAACCTTGAAGACAGGAAAGGTGTTAAATCACCTTTAGCCTCCCGT 2148
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2294 AGCAGCACAAAGGCAAACCTTGAAGACAGGAGAGGTATTAAATCACCTTTAGCCTCCCGT 2353
Query 2149 CGTGCACAAAGATTGAGTTTGGAGGGTCCAAAGTCCTGTAAAAACGAAGAAAACAGTAAA 2208
|||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 2354 CGTGCACAAATATTGAGTCTGGAGGGTCCAATGTCCTGTAAAAACGAAGAAAACGGTAAA 2413
Query 2209 GGAGATCCCACCATGGAAGTGCACCAGCTCAAGAATCCACGGAGTCCTTTAAGCTCTTAT 2268
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2414 GGAGATCCCACCATGGAAGTGCACCAGCTCAAAAATCCACGGAGTCCTCTAAGCTCTTAT 2473
Query 2269 CAAAACCGAGCAGTGAAAGTAGATGGCAGAACAAGCATTCCTCAACTTCAGCTATTGCAA 2328
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2474 CAAAACCGAGCCGTGAAAGTAGATGGCAGAACAAGCATTCCTCAACTCCAGCTATTACAA 2533
Query 2329 ACACCAGTTAAAGGTGCTTCCAGAAACGACATACAAATGATTTCTGTGGATTCTAGGACA 2388
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 2534 ACACCAGTTAAAGGAGCTTCCAGAAACGACATACAGATGATTTCTGTTGATTCTAAGACA 2593
Query 2389 AATGGAAAAGGTTCACAAATACGGAAGTCCCTGAGGACAATTGGAAAGCTGATCAATGGT 2448
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2594 AATGGAAAAGGTTCACATATACGGAAGTCCCTGAGGACAATTGGAAAGCTGATCAATGGT 2653
Query 2449 TCAGAGAAGAGGAAAGATAACATTCCTGCAGATCCACGGTCACCACTTGGAGTTGCAAAT 2508
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2654 TCAGAGAAGAGGAAAGAGAACATTCCTGCAGATCCACGGTCACCACTTGGAGTTGCTAAT 2713
Query 2509 AATTTCAGTCATATAAAGTCCCCGGACACAAGCAACGCTAAGACTATGCGACGGCAGTCA 2568
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2714 AATTTTAGTCATATAAAGTCCCCGGACACAAGCAACGCTAAGACTATGCGACGGCAGTCA 2773
Query 2569 CTCACAGGTGTAATGCCACCAGGGCAAGAAAGATCACGTCGATCCTCAATAGGAGGAAAA 2628
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2774 CTCACAGGTGTAATGCCACCAGGGCAAGAAAGATCACGTAGATCCTCAATAGGAGGAAAA 2833
Query 2629 CCAATTGAGAATGGTAAGAAAGATC 2653
|||||||||||||||||||||||||
Sbjct 2834 CCAATTGAGAATGGTAAGAAAGATC 2858
Score = 1332 bits (721), Expect = 0.0
Identities = 796/832 (96%), Gaps = 5/832 (1%)
Strand=Plus/Plus
Query 1 ATGACAACTGGGTTGCACGAATTCAATCTGGCTTCAAGAAGAGCCGAAGAAGCAGCGGCG 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 131 ATGACAACTGGGTTGCACGAATTTAATCTGGCTTCTAGAAGAGCCGAAGAAGCAGCGGCG 190
Query 61 AGGAGGTTTCAAGCCGTGCAATGGCTTAAATCTGTAGTGGGTCAACTGGGCATACCGAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 191 AGGAGGTTTCAAGCCGTGCAATGGCTTAAATCTGTAGTGGGTCAACTGGGTATACCGAAT 250
Query 121 CAGCCATCGGAGAAGGAGTTCATTTCTTGCTTGAGAAATGGTATGATTCTTTGTAATGCA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 251 CAGCCATCGGAGAAGGAGTTCATTTCTTGCTTGAGAAATGGTATGATACTTTGTAATGCA 310
Query 181 ATCAACAAGATCCACCCAGGAGCCGTTTCCAAGGTTGTGGAGAACTACTCGTATATGAAC 240
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 311 ATCAACAAGATCCACCCAGGAGCTGTTTCAAAGGTTGTGGAGAACTACTCGTATTTGAAC 370
Query 241 GGAGAGTATCAACTTCCACCGGCTTATCAATATTTCGAGAATGTTCGGAATTTTCTTGTG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAGAGTATCAGCTTCCACCGGCTTATCAATATTTCGAGAATGTTCGGAATTTTCTTGTG 430
Query 301 GCTTTAGAAACATTGAGGCTTCCTGGATTTGAAGCTTCTGATCTTGAAAAGGATAATCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GCTTTAGAAACATTGAGGCTTCCTGGATTTGAAGCTTCTGATCTTGAAAAGGATAATCTA 490
Query 361 GAGTCTGGATCAGTGACCAAGGTTGTGGATTGCATTTTAGGACTTAAGGCTTACCATGAG 420
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 491 GAGTCTGGATCAGTGACCAAGGTTGTGGATTGCATTTTGGGACTTAAGGCATACCATGAG 550
Query 421 TGCAAGATAACGAGCAATGGTAATGGGTTATACAAGCACGTCAAAACGCCGACATTTCAG 480
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 551 TGCAAGTTACCGAGCAATGGTAATGGGTTATACAAGCACGTCAAAACGCCGACGTTTCAG 610
Query 481 CTCTCTGCGACTAAGATTCAGCCT-CT--AAGTGCTTCCAAAACGTCTAGGCATTTGGAT 537
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 611 CTCTCTGCGACTAAGATTCACCCTACTCTAAGTGCTTCCAAAACGTCTAGGCATTTGGAT 670
Query 538 ATGTCCTCAGTCCGTGATATAAACGATTGCACTGATGGTGAATCTGATAAACTCAAAGAG 597
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 671 ATGTCCTCAGTCCGTGAGAGAAACGATTGCACTGATGGTGAATCTGATAAACTCAAAGGG 730
Query 598 ATAGCCAAGTTGTTTGCCGATCATATTTTCAATTCCAAGGAAAATATTGATGAGAATCTT 657
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 731 ATAGCCAAGTTGTTTGCCGATCACATTTTCAGTTCCAAGGAAAATATTGATGAGAATCTT 790
Query 658 ATTTCATTAGAGAATGGCACTGGGAATCCTAGAGCAAACTTCGAGAAAATCATCTCAAGA 717
|||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||
Sbjct 791 GTTTCATTAGAGAATGGCAGTGAGAATTCTAGAGCAAACTTCGAGAAAATCCTCTCAAGA 850
Query 718 TTCCCAGAGCTTCAGTCAGTATTCAAGAATTTACTTAGCGAAGGTACTTTGAGTCCACCA 777
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 851 TTCCCAGAGCTTCAATCAGTATTCAAGAATTTACTTAGCGAAGGAACTTTGAAACCATCA 910
Query 778 GAATTAAAATCCATGCC-TCTGGAGGAGTTACTTGTCCATGAAGAAGACCAA 828
|| |||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 911 GACTTAAAATCCATGCCGT-TGGAGGAGTTACCTGTCCATGAAGAAGACCAA 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133795236981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5