BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903923
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10440.1 | Symbols: | Shugoshin C terminus | chr3:3245329-3... 1260 0.0
> AT3G10440.1 | Symbols: | Shugoshin C terminus | chr3:3245329-3248987
FORWARD LENGTH=1766
Length=1766
Score = 1260 bits (682), Expect = 0.0
Identities = 843/918 (92%), Gaps = 22/918 (2%)
Strand=Plus/Plus
Query 639 CAGTTTTAAAACTCGAGCCA-CTGGCCAAACGGTAAA-CTTGCAAAAAGTGGTTGACACC 696
||||| ||| ||||||| | | ||||||| | ||| ||||||||| ||||||||| ||
Sbjct 866 CAGTTCTAAGACTCGAG-AAGCCAGCCAAACAG-AAACCTTGCAAAAGGTGGTTGACGCC 923
Query 697 AGAGAAAATAAGGAGGATGCAAGGGTTTCTTTGAAAAAGCATACTGACTGGGTAAAATCT 756
| ||||| ||||| |||||||||| ||||||||| ||||||| |||||||| ||||||||
Sbjct 924 AAAGAAATTAAGGGGGATGCAAGGTTTTCTTTGACAAAGCATTCTGACTGGTTAAAATCT 983
Query 757 CAAGAACCTGAGCCATCTGAAAACCCATACGAGTCAAGCAGGTTCCCTTTGAGAAGGCGT 816
|||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||
Sbjct 984 CAAGAACCTGAGCCATCTGAAAGCCTATACGAGTC-A--AGGTTCCCTTTGAGAAGGCGT 1040
Query 817 TCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAAAGCCTCCATGAGTCAATAGAG 876
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1041 TCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAAAGCTTCCATGACTCAATAGAG 1100
Query 877 ACAACCAGGAGGAAGAGGTCTACAATAAGCGTTAGGCAGTCTGGGATGTTCAATATCCAA 936
||||||| ||||| |||||| ||||||| | | | | || ||||| |||||||||
Sbjct 1101 ACAACCAAGAGGAGGAGGTCGGCAATAAG-G-T---CTG-CT---ATGTTTAATATCCAA 1151
Query 937 GAGCTGGGCGTTATTCAGAACTTGAATGGTTTACATGATGATCAAGAGATTTCTGCAAAG 996
||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 1152 GAGCTGGGCGTTATTCAAAACTTGAACGGTTTACCTGATGATCAAGAGATTGCTGCAAAG 1211
Query 997 GCCGGATGCTCTGTGCGTGAACTGTCTACCGGGTCTAAACCCGAAGCAGTAGAACCACAT 1056
||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1212 GCCAGATGCTCTGCACGTGAACAGTCTACCGGGTCTAAACCCGAAGCAGTAGAACCACAT 1271
Query 1057 GACTCAAAACAGATAACCGGGAAAAGCAGGGTATCTTTGAGAAGACAGTCTGCGAGGTTT 1116
||| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1272 GACACAAAAGAGATAATCGGGAAAAGCAGGATATCTTTGAGAAGACAGTCTGCGAGGTTT 1331
Query 1117 AATTTCCAAGAGCTGTGCGTGACTGAAAACTTGAATGGTCCACATGATGATCAAACGATT 1176
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AATTTCCAAGAGCTGGGCGTGACTGAAAACTTGAATGGTCCACATGATGATCAAACGATT 1391
Query 1177 GCTGCAAATGCCAGATGCTGTGCAAGTGAACAGTCTATCAGGTCTAAACACGAAGCAGTA 1236
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1392 GCTGCAAATGCCAGATGCTGTGCAAGTGAACAGTCTATCGGGTCTAAACCCGAAGCAGTA 1451
Query 1237 GAACCACATGACAT-GAAAGAGACAATCGGGAAAAGCAGAGTCTCTTCAAGAAGACAATC 1295
|||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1452 GAACCACATGACATTGAA-GAGAGAATCGGGAAAATCAGAGTCTCTTCAAGAAGACAATC 1510
Query 1296 TGCAAACATTGAAACTCCGAGAGCCATCAAAGAATCC-GCAGATCCGCCTTTGCATGATG 1354
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 1511 TGCAAACATTGAAACTCCGAGAGCCATCAAAGAA-CCTGCAAATCCGCCTTTGCATGATG 1569
Query 1355 ACATTATTGAGGAGTCTAGTCATG-TATCATCATCGGTTTCAATGGAGCTTAAAAGAGAA 1413
||| | |||||||||||||||| | |||||| || ||||||||||||||||||||||||
Sbjct 1570 ACAATGTTGAGGAGTCTAGTCA-GATATCATGTTCAGTTTCAATGGAGCTTAAAAGAGAA 1628
Query 1414 TCAAAGAACAAACCAACATGCGATGAATCAGAGGAAATGAGGAAAACAACTGTTGGAAGA 1473
|||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1629 TCAAAGAAGAAACCAACAGGCGACGAATCAGAGGAAATGAGAAAAACAACTGTTGGAAGA 1688
Query 1474 CCTTCAAGGCAAGCTGCTGAAAAAATCAAATCGTACAAGGAACCCTCACTTAAGGAGAAG 1533
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1689 CCTTCAAGGCAAGCTGCTGAAAAAATCAAATCGTACAAGGAACCTTCACTTAAGGAGAAG 1748
Query 1534 ATGCGAGGGGGCTTCTGA 1551
||||||||||||||||||
Sbjct 1749 ATGCGAGGGGGCTTCTGA 1766
Score = 316 bits (171), Expect = 3e-85
Identities = 189/198 (95%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCGCGCGACGGTTCTAAATGTCGGTGATCATGCCGGTGAAGGTGTGCCTATTAAC 60
|||||||| ||||||||||| |||||||||||||| ||| |||||||||||| || ||||
Sbjct 48 ATGGTTCGAGCGACGGTTCTGAATGTCGGTGATCACGCCAGTGAAGGTGTGCGTACTAAC 107
Query 61 AAAGCTAAAGGAGAGAAAATGGTTCTGGAACCTCCGATGAACAGTGCACAAAGACGAAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 AAAGCTAAAGGAGAGAAAATGGTTCTGGAACCTCCGATGAACAGTGCACAAAGACGAAAG 167
Query 121 TTGGGGGATATTACTAATTTGCAGAATCAGAAGAATCTAATGAATCAGGGAGCGAAGCAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTGGGGGATATTACTAATTTGCAGAATCAGAAGAATCTAATGAATCAGGGAGCGAAGCAT 227
Query 181 CAGAAACAAGCTATATTA 198
||| ||||||||||||||
Sbjct 228 CAGCAACAAGCTATATTA 245
Score = 311 bits (168), Expect = 1e-83
Identities = 216/239 (90%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 400 AAGGCTCATGCAAATGCTTGTGGTGGGGCTTGCAGAACCTTTCAGCCAAATGACGCAGAT 459
|||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 549 AAGGCTCAAGCAAATGCTTGTGGTGGGGCTTGCAAAACCTTTCAGCCAAATGATGCAGAT 608
Query 460 CATGAGAATGCTTCAGAGAGCTCTAACGTTAACTCATTGCAAATAAATGAGAAAGCCAAC 519
|||||| ||||||| | |||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 609 CATGAGCATGCTTCCGGGAGCTCCAACGCTAACTCATTGCAAAGAAATGAGAAAGCCAAC 668
Query 520 AATAAAAGGAGAGTTTCTGGAAGGAAGAATCCTGCCAATTCCGAAGTATTAGATATTATT 579
| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 669 AGTAAAAGGAGAGTTTCTGGAAGGAAGAATCCCGCCAATTCCGAGGTATTAGATATAATT 728
Query 580 GATAGA-CTGGCAGAGACATGTCCGACAGAAGACAACATTGACAACAAGAAATTG-TCT 636
| ||| | || ||||||||||| || ||||||||||||||||||||||| ||| |||
Sbjct 729 GGCAGATCGGG-AGAGACATGTCAGATGGAAGACAACATTGACAACAAGAAGTTGGTCT 786
Score = 191 bits (103), Expect = 2e-47
Identities = 184/218 (84%), Gaps = 26/218 (12%)
Strand=Plus/Plus
Query 211 CTGATGAAAGTCGTCACT-GAGAGAGATGGAATCAAAAGTGAGCTGAAGAAACTTAGGAT 269
|||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 294 CTGATGAAAGTCGTCA-TGGAGAGAGATGGAATCAAAAGTGATCTGAAGAAACTTAGGAT 352
Query 270 TGACTTTCAGAAGGTTCAAGAACAAAATTTGCTACTTGCCCAGGC-AA-A--CG---C-T 321
||| |||||||||||||||||||| |||||||||||||||||||| || | || | |
Sbjct 353 TGAATTTCAGAAGGTTCAAGAACAGAATTTGCTACTTGCCCAGGCTAACACTCGTATCTT 412
Query 322 --C---G-T--AT-CTTG----G--C-GCTGAAGGTACTTCAGCACGAACTTGGTTGCAA 365
| | | || | | | | ||||||||||||||||||||||||||||||||
Sbjct 413 GGCGGAGTTCAATACAAGCAAAGACCAACTGAAGGTACTTCAGCACGAACTTGGTTGCAA 472
Query 366 GAATGGGTTAGTCATGGCCAGGAAATTACTGCTTAAGG 403
||||||||||||||||||||||||| | ||||||||||
Sbjct 473 GAATGGGTTAGTCATGGCCAGGAAAATGCTGCTTAAGG 510
Score = 176 bits (95), Expect = 5e-43
Identities = 167/201 (83%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 913 CAGTCTGGGATGTTCAATATCCAAGAGCTGGGCGTTATTCAGAACTTGAATGGTTTACAT 972
||||||| || ||| ||| |||||||||||||||| | | | |||||||||||| ||||
Sbjct 1317 CAGTCTGCGAGGTTTAATTTCCAAGAGCTGGGCGTGACTGAAAACTTGAATGGTCCACAT 1376
Query 973 GATGATCAAGA-GATTTCTGCAAAGGCCGGATGCTCTGTGC--GTGAACTGTCTACCGGG 1029
||||||||| | |||| ||||||| ||| |||| |||||| |||||| ||||| ||||
Sbjct 1377 GATGATCAA-ACGATTGCTGCAAATGCCAGATG--CTGTGCAAGTGAACAGTCTATCGGG 1433
Query 1030 TCTAAACCCGAAGCAGTAGAACCACATGAC-TCAAAACAGATAACCGGGAAAAGCAGGGT 1088
|||||||||||||||||||||||||||||| | || ||| || |||||||| ||| ||
Sbjct 1434 TCTAAACCCGAAGCAGTAGAACCACATGACATTGAAG-AGAGAATCGGGAAAATCAGAGT 1492
Query 1089 ATCTTTGAGAAGACAGTCTGC 1109
|||| |||||||| |||||
Sbjct 1493 CTCTTCAAGAAGACAATCTGC 1513
Score = 86.1 bits (46), Expect = 9e-16
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 796 AGGTTCCCTTTGAGAAGGCGTTCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAA 855
||||| |||||| || || ||||| | ||||||||||||||||||||||||||||||||
Sbjct 945 AGGTTTTCTTTGACAAAGCATTCTGACTGGTTAAAATCTCAAGAACCTGAGCCATCTGAA 1004
Query 856 AGCCTCCATGAGTCAA 871
||||| | |||||||
Sbjct 1005 AGCCTATACGAGTCAA 1020
Score = 62.1 bits (33), Expect = 2e-08
Identities = 47/54 (87%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 725 CTTTGAAAAAGCATACTGACTGGGTAAAATCTCAAGAACCTGAGCCATCTGAAA 778
|||||| || || | ||| | || ||||||||||||||||||||||||||||||
Sbjct 1027 CTTTGAGAAGGCGTTCTGCCCGGTTAAAATCTCAAGAACCTGAGCCATCTGAAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5