BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903943

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10595.1 | Symbols:  | Duplicated homeodomain-like superfami...   518    3e-146


> AT3G10595.1 | Symbols:  | Duplicated homeodomain-like superfamily 
protein | chr3:3311785-3312831 REVERSE LENGTH=688
Length=688

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 454/534 (85%), Gaps = 28/534 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTGAAACTTCATGGACGAGAGAGGAGAACGAGAAGTTCAAGAATGCACTGGTGTTG  60
            |||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| ||
Sbjct  17   ATGGCTGAAAATTCATGGACGACAGAGGAGAACGAGATGTTCAAGGATGCACTGGTGATG  76

Query  61   TTCTCTGCCTTTTTGCCTACTCGGTTCCAGATTATCGCGGAGAATGTGCAGAAATCGGTG  120
            ||| |||||||||||| |||||||||  ||| | |||| ||| ||||| | | |||||||
Sbjct  77   TTCACTGCCTTTTTGCTTACTCGGTTTGAGAGTGTCGCCGAGTATGTGGATAGATCGGTG  136

Query  121  GCTGATGTTAAGGAGCATTACAAGGAAATGGTCAATGATCTTTTAGAGAGGGGATCCAGT  180
            | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  137  GATGATGTTAAGGAGCATTACAAGGAATTGGTCAATGATCTTTTAGAGATGGGATCCAGT  196

Query  181  CGAGTTGCTTTTCCTAATAAATTGACTGAGGCTATGGCTCAAAGATCGTACCAGGCCGAG  240
            ||||| |||||||||||| |||||||| ||| |||||||||||| |||||||||||||||
Sbjct  197  CGAGTAGCTTTTCCTAATGAATTGACTAAGGATATGGCTCAAAGTTCGTACCAGGCCGAG  256

Query  241  AGAACTAAATGGAACAAAGAAACACATGAATGGTTTCTGATCGGGTTAAAGCGGTTTGGG  300
            ||||||| ||||| ||||||||||||||||||||||||||| |||||| | || ||||||
Sbjct  257  AGAACTATATGGACCAAAGAAACACATGAATGGTTTCTGATTGGGTTAGACCGATTTGGG  316

Query  301  AAAGATTGGCGTAAAATAGCCGTCTTATTGAATTCCAAGAATCCGAAGCAAGTGGAGATA  360
            |||||||||||||||||||||||||||||| ||| |||||  ||||  ||||| ||||||
Sbjct  317  AAAGATTGGCGTAAAATAGCCGTCTTATTGGATTGCAAGAGCCCGATCCAAGTCGAGATA  376

Query  361  TATGCACATAACTATTT-CAACTGGCAAAGCTCAGAGGAAAATGTGATGAAACGCCCTAG  419
            |||||| | |||| ||| | | |||||||||||| || ||||||||||         || 
Sbjct  377  TATGCAGAAAACT-TTTACCAGTGGCAAAGCTCAAAGAAAAATGTGAT---------TA-  425

Query  420  AGCCAACGACATAACTGTGGAGAAT-ACGGAAGTGAATGTGATGAAACGGCAGAGAGCAA  478
            | |    ||| ||| |||||  ||  || || ||||||||||||||||||||| ||||||
Sbjct  426  A-C----GACTTAAATGTGGC-AAGCACCGATGTGAATGTGATGAAACGGCAGGGAGCAA  479

Query  479  ATGACATGGTGGACACCAATGTGGGCTCAACGGGCCAACAAGAGAGTCTCGTCG  532
            || | |       ||||||||||| |||||| ||||||||||||||||||||||
Sbjct  480  AT-A-A-------CACCAATGTGGACTCAACAGGCCAACAAGAGAGTCTCGTCG  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5