BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903949
Length=3972
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10650.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 4237 0.0
> AT3G10650.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202; Bacteria
- 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653;
Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
| chr3:3325170-3330892 REVERSE LENGTH=4395
Length=4395
Score = 4237 bits (2294), Expect = 0.0
Identities = 2570/2706 (95%), Gaps = 8/2706 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGCGCGGCACGGGGAGAGAGCAGCAATCCATACGGCGGCGGATTGGGAACCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ATGGCGAGCGCGGCACGGGGAGAGAGCAGCAATCCATACGGCGGCGGATTGGGAACCGGA 133
Query 61 GGAAAGTTCCGGAAGCCAACGGCTCGAAGGACTCAGAAAACTCCGTATGATCGACCGCCG 120
||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||
Sbjct 134 GGAAAGTTCCGGAAGCCGACGGCTCGTAGGTCTCAGAAAACTCCTTATGATCGACCAACG 193
Query 121 ACTTCTGTGAGGAACTCTGGAATTGGTGGCGAAGATGTCAGAGGCGGCGGTTGGTTGTCG 180
||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 194 ACTTCTGTGAGGAACGCTGGACTTGGTGGCGGAGATGTCAGAGGCGGCGGCTGGTTGTCA 253
Query 181 AAATTGGTGGATCCGGCGCAGAGGCTTATTACTTATAGTGCTCATAGGCTCTTCGCGTCC 240
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 254 AAATTGGTGGATCCGGCGCAGAGACTTATTACTTATAGTGCTCAGAGGCTCTTCGGGTCC 313
Query 241 GTT-TTCCGGAAACGCCTCGGCTCAGGTGAGACGCCTGTACAGTCGCCGGAGCAGCAGAA 299
|| | |||||||||||||||||| |||||||||||| |||| |||||||| ||||||||
Sbjct 314 -TTATCCCGGAAACGCCTCGGCTCTGGTGAGACGCCTTTACAATCGCCGGAACAGCAGAA 372
Query 300 GCAGATTCCAGAAAGAGATGTGAATCAGGAGACGAAGGTAGTACACAAGGAGGACGTCTC 359
|||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 373 GCAGCTTCCAGAAAGAGGTGTGAATCAGGAGACGAAGGTTGGACACAAGGAGGACGTCTC 432
Query 360 TAATCTGTCCATGAAGAATGGTTTGATTCGGATGGAAGATACCAATGCCTCTGTCGATCC 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TAATTTGTCCATGAAGAATGGTTTGATTCGGATGGAAGATACCAATGCCTCTGTCGATCC 492
Query 420 AACGAAGGATGGATTTACAGATCTTGAGAAAATCTTACAGGGAAAAACTTTTACAAGGTC 479
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ACCTAAGGATGGATTTACAGATCTTGAGAAAATCTTACAGGGAAAAACTTTTACAAGGTC 552
Query 480 TGAAGTTGATCGATTAACTACATTGCTGCGTTCAAAAGCTGCTGATTCATCCACTATGAA 539
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 553 TGAAGTTGATCGATTAACTACCTTGTTGCGTTCAAAAGCTGCTGATTCATCCACTATGAA 612
Query 540 TGAGGAGCAGAGAAATGAAGTGAGTATTGTTGTGAGACATCCACCATCACATGAGAGGGA 599
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 613 TGAGGAGCAGAGAAATGAAGTGGGTATGGTTGTGAGACATCCACCATCACATGAGAGGGA 672
Query 600 CAGGACGCATCCAGATAATGGAAGTATGAACATCCTTGTTTCAACACCTCCTGGAAGTTC 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 673 TAGGACGCATCCAGATAATGGAAGTATGAACACCCTTGTTTCAACACCTCCTGGAAGTTT 732
Query 660 GAGAGCTCTCGATGAGTGCATTGCTTCGCCAGCACAGCTTGCAAAAGCTTACATGGGTAG 719
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 733 GAGAACTCTCGATGAGTGCATTGCGTCGCCAGCACAGCTTGCAAAAGCCTACATGGGTAG 792
Query 720 CAGACCTTCAGAAGTTACTCCTTCTATGTTGGGGTTGCGTGGTCAAGCGGGTAGGGAAGA 779
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 793 CAGACCTTCAGAAGTTACTCCTTCTATGTTAGGGTTACGTGGTCAAGCGGGTAGGGAAGA 852
Query 780 TTCTGTTTTCCTGAACAGAACCCCTTTTCCGCAAAAGTCACCTACAATGTCACTGGTAAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 853 TTCTGTTTTCCTGAACAGAACCCCTTTTCCGCAAAAGTCACCTACAATGTCGCTGGTAAC 912
Query 840 AAAGCCTTCTGGACAAAGACCTTTGGAAAATGGTTTTGTTACCCCTAGATCTCGGGGAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAAGCCTTCTGGACAAAGACCTTTGGAAAATGGTTTTGTTACCCCTAGATCTCGGGGAAG 972
Query 900 ATCTGCTGTTTATAGCATGGCCAGAACACCATACTCTAGGCCTCAGTCCACTGTGAAGAT 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 973 ATCTGCTGTTTATAGCATGGCCAGAACACCATACTCTAGGCCTCAGTCCAGTGTGAAGAT 1032
Query 960 TGGGTCTCTTTTTCAAGCATCTCCAAGCACATGGGAAGAAAGCTTGCCTTCTGGTTCTAG 1019
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1033 TGGGTCTCTTTTTCAAGCATCTCCAAGCAAATGGGAAGAAAGCTTACCTTCTGGTTCTAG 1092
Query 1020 ACAAGGGTTTCAATCGGGTCTTAAACGCAGGAGCTCAGTCTTAGATAATGATATAGGATC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 ACAAGGGTTTCAATCGGGTCTTAAACGCAGGAGCTCAGTCTTAGATAATGATATAGGATC 1152
Query 1080 TGTGGGCCCTGTAAGGAGGATTCGTCAAAAATCTAACCTTTCATCGCGAAGCTTGGCTCT 1139
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1153 TGTGGGCCCTGTAAGGAGGATCCGGCAAAAATCTAACCTTTCATCTCGAAGCTTGGCTCT 1212
Query 1140 GCCTGTTTCTGAGAGCCCACTTTCTGTCCGTGCCAATGGTGGAGAAAAAACTACACATAC 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1213 GCCTGTTTCTGAGAGCCCACTTTCTGTCCGTGCCAATGGTGGAGAAAAAACTACGCATAC 1272
Query 1200 ATCTAAAGATAGTGCAGAGGATATTCCTGGTTCAAGTTTTAACCTTGTTCCTACCAAGTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 ATCTAAAGATAGTGCAGAGGATATTCCTGGTTCAAGTTTTAACCTTGTTCCTACCAAGTC 1332
Query 1260 AAGTGAGATGGCGTCAAAAATATTGCAGCAACTTGATAAAATTGTTTCAACGAGGGAGAA 1319
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1333 CAGTGAGATGGCGTCAAAAATATTGCAGCAACTTGATAAACTGGTTTCAACAAGGGAGAA 1392
Query 1320 ATCACCAAGTAAGTTATCACCATCCATGCTTCGGGGTCCTGCTCTCAAAAGCCTCCAGAA 1379
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1393 ATCACCAAGTAAGTTATCACCATCCATGCTACGGGGTCCCGCTCTCAAAAGCCTCCAGAA 1452
Query 1380 TGTGGAGGCGCCAAAGTTCTTGGATAATCTTCCTGAGAAGAAGGCAAATTTGCCAGAATC 1439
||| |||||||||||||| |||| ||||||||| |||||||||||||||| |||||| ||
Sbjct 1453 TGTAGAGGCGCCAAAGTTTTTGGGTAATCTTCCCGAGAAGAAGGCAAATTCGCCAGATTC 1512
Query 1440 TAGTTATCAAAAGCAGGAAATATCTAGAGAAAGTGTCTCCAGAGAGGTTTTAGCTCCGAG 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1513 TAGTTATCAAAAGCAGGAAATATCTAGAGAAAGTGTCTCCAGAGAGGTTTTAGCTCAGAG 1572
Query 1500 TGAGAAGACTGGTGGTGCTGTTGATGGAACAAGCAAAATAGGTTCCAGTAAAGATCAGGA 1559
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1573 TGAGAAGACTGGTGATGCTGTTGATGGAACAAGCAAAACAGGTTCCAGTAAAGATCAGGA 1632
Query 1560 TACGCGTGGTAAAGGTGTTTATTTGCCTCTCACTAATTCTTTGGAAGAGCATCCTCCAAA 1619
|| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1633 TATGCGTGGTAAAGGTGTTTATATGCCTCTCACGAATTCTTTGGAAGAGCATCCTCCAAA 1692
Query 1620 AAAGAGAGCATTTCGAATGAGTGCGCATGAGGATTTCTTGGAGTTGGATGATGATCATGG 1679
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1693 GAAGAGATCATTTCGAATGAGTGCGCATGAGGATTTCTTGGAGTTGGATGATGATCTTGG 1752
Query 1680 TGCAGCATCTACTCCATTTGAAGTGGTAGAAAAACAGAATGCCTTCAAAGGAGAGAAAAG 1739
||||||||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||
Sbjct 1753 TGCAGCATCTACTCCATGTGAAGTAGCAGAAAAACAGAATGCCTTCGAAGTAGAGAAAAG 1812
Query 1740 TCATATCAGCATGCCTAAAGGGGAGAAACCACTTACTCCGTCAGATGCCATGCCCTCTAC 1799
||||||||||||||||| ||||||||||||||||||||| || || |||||||| |||||
Sbjct 1813 TCATATCAGCATGCCTATAGGGGAGAAACCACTTACTCCATCTGAAGCCATGCCATCTAC 1872
Query 1800 ATCATATATTTCTAATGGTGACGCCTCTCAGGGTACTTCTAATGGGTCTCTGGAAACTGG 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 ATCATATATTTCTAATGGTGACGCCTCTCAGGGTACTTCTAATGGGTCTCTGGAAACTGA 1932
Query 1860 AAGGAACAAGTTTGTTGCTTTGCCCATTGAAGCTGTTCAGCAAAGTAATATGGCCTCTGA 1919
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1933 AAGAAACAAGTTTGTTGCTTTCCCCATTGAAGCTGTTCAGCAAAGTAATATGGCCTCTGA 1992
Query 1920 ACCAACTTCAAAGTTCATCCAAGGAACTGAGAAATCGAGTATTTCTTTTGGCAAACCAAC 1979
||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 1993 GCCAACTTCAAAGTTCATCCAAGGGACTGAGAAATCGAGTATTTCTTCTGGCAAGCCAAC 2052
Query 1980 CACAGAAGAGAAAGGTATCCCTCTGGAAGAGCCTAAAAAACCTGCTGCTGTATTTCCCAA 2039
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 CTCAGAAGAGAAACGTATCCCTCTGGAAGAGCCTAAAAAACCTGCTGCTGTATTTCCCAA 2112
Query 2040 CATCTCCTCATCACCGGCTGCAACTGGCTTATTAAATCAAAACACTGCTGCATCTGCAGA 2099
||||||| |||||| |||| || ||||||||||||||||||| || ||||||||||||
Sbjct 2113 TATCTCCTTTTCACCGCCTGCCACGGGCTTATTAAATCAAAACAGTGGTGCATCTGCAGA 2172
Query 2100 CATCAAGTTAGAAAAGACTAGCAGCACTGCTTTTGGAGTATCTGAAGCTTGGGCAAAGCC 2159
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 2173 CATCAAGTTAGAAAAGACTAGCAGCACTGCGTTTGGAGTATCAGAGGCTTGGGCAAAGCC 2232
Query 2160 AACTGAATCAAAGAAAACTTTCAGCAACAATGCTTCTGGAG-TGGAGTCAACTACCTCAG 2218
|||||||||||||||||| |||||||||| ||||||||||| || ||||| |||||||||
Sbjct 2233 AACTGAATCAAAGAAAACGTTCAGCAACAGTGCTTCTGGAGCTG-AGTCATCTACCTCAG 2291
Query 2219 CTGCATCAACCCTCAATGGTAGTATATTCTCAGCTGGAGCAAACGCTGTTAATCCACCTC 2278
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2292 CTGCACCAACCCTCAATGGTAGTATATTCTCAGCTGGAGCAAACGCTGTCACTCCACCTC 2351
Query 2279 CGAGTAATGGCTCTCTTACTTCAAGCCCTTCCTTCCAACCTACTATTTCAAATATACCTT 2338
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2352 CGAGTAATGGCTCTCTTACTTCAAGCCCTTCCTTCCCACCTTCTATTTCAAATATACCTT 2411
Query 2339 CGGAGAATTATGTGGGTGAGGTGCTGTCCGCTGTTCAATCTCTTGCTGCTACTCACAATT 2398
| || |||| ||||||||| ||| |||| ||||||||||| ||||||||||||||||||
Sbjct 2412 CTGATAATTCTGTGGGTGATATGCCGTCCACTGTTCAATCTTTTGCTGCTACTCACAATT 2471
Query 2399 CCTCTAGTATATTTGGAAAGTTGCCTACCAGTAACGACAGCAACTCACAATCAACTTCAG 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2472 CCTCTAGTATATTTGGAAAGTTGCCTACCAGTAACGACAGCAACTCACAATCAACTTCAG 2531
Query 2459 CACCTCCCCTCTCTTCTACATCACCTTTCAAGTTTGGGGAACCTGCAGCTCCATTTTCTG 2518
|| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2532 CATCTCCCCTCTCTTCCACATCACCTTTCAAGTTTGGGCAACCTGCAGCTCCGTTTTCTG 2591
Query 2519 TGCCAGCAGTATCT-ACATCTAGCAGTCAGATCTCAAAGGAGACTGAAGTTAAAAACGCC 2577
||||||||| ||| | ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2592 CGCCAGCAGTGTCTGA-ATCTAGCGGTCAGATCTCAAAGGAGACTGAAGTAAAAAACGCC 2650
Query 2578 ACATTTGGAAATACAAACACTTTCAAGTTTGGAGGTATGGCTTCAGTAGACCCGGGCACT 2637
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 2651 ACATTTGGAAATACAAGCACTTTCAAGTTTGGAGGTATGGCTTCAGCAGACCAGAGCACT 2710
Query 2638 GGCAGCGTTTTTGGTGCTAAATCTG-GAGAAAATAAAAGCACACCAGGTTTTGTGTTTGG 2696
|||| |||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||
Sbjct 2711 GGCATCGTTTTTGGTGCTAAATCTGCG-GAAAATAAAAGCAGACCTGGTTTTGTGTTTGG 2769
Query 2697 GAGCTC 2702
||||||
Sbjct 2770 GAGCTC 2775
Score = 1886 bits (1021), Expect = 0.0
Identities = 1170/1241 (94%), Gaps = 14/1241 (1%)
Strand=Plus/Plus
Query 2742 TGGGA-CATCCTCTGTGGTTGGTGGGAGCACATTAAACCCTTCTACTGCTGCAGCTTCGG 2800
||||| | ||||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2767 TGGGAGC-TCCTCCGTTGTTGGTGGCAGCACATTAAACCCTTCTACTGCTGCAGCTTCAG 2825
Query 2801 GACCTGAGAGCTCTGGAAGTTTAATATTTGGTGTGACATCTTCCTCAACCCCTGGGACAG 2860
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2826 CACCTGAGAGCTCTGGAAGTTTAATATTTGGTGTGACATCGTCCTCAACCCCTGGGACAG 2885
Query 2861 AGACCAGCAAATTTTCTGCGAGTTCTACAGCTACTAATACTGGAAATAGTATATTTGGTA 2920
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 2886 AGACCAGCAAAATTTCTGCGAGTTCTGCAGCTACTAATACTGGAAATAGTGTATTTGGCA 2945
Query 2921 CTTCCTCTACCGCATTTACAAGCTCTGGTAGTAGCATGTTTGGTGGTGTAGCTGCAAGTA 2980
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2946 CTTCCTCTTTTGCATTTACAAGCTCTGGTAGTAGCATGGTTGGTGGTGTATCTGCAAGTA 3005
Query 2981 CTGGAAGCAGTGTTTTTGGATTCAATGCTGCTTCATCAGCTTCTACTGCTAGCTCTCAAT 3040
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 3006 CTGGAAGCAGTGTTTTTGGATTCAATGCTGTTTCATCAGCTTCTGCTACTAGCTCTCAAT 3065
Query 3041 CCCAGGCCTCAAATCTTTTTGGTGCTGGAAATGCTCAGACGGGTAATACCGGGAGCGGAA 3100
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3066 CTCAGGCCTCAAATCTTTTTGGTGCTGGAAATGCTCAGACGGGTAATACTGGGAGCGGAA 3125
Query 3101 CCACAACATCAACTCAAAGCATCCCCTTTCAGTTTGGTTCATCTGCATCAGCTCCTTCAT 3160
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3126 CCACAACATCAACTCAAAGCATCCCCTTTCAGTTTGGTTCATCTCCATCAGCTCCTTCAT 3185
Query 3161 TTGGTTTGTCTGGGAACTCTTCTCTTGCATCAAACAGTTCTCCATTTGGGTTTTCAAAGT 3220
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 3186 TTGGTTTGTCTGGGAACTCTTCTCTTGCATCAAACAGTTCTCCATTTGGATTTTCTAAGT 3245
Query 3221 CGGAACCTGCTGTATTTACTTCTG-GCTCAACTCCTCAGTTGAGTTCGACAAACACCTCT 3279
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||
Sbjct 3246 CGGAACCTGCTGTATTTACTTCTGTG-TCAACTCCTCAATTGAGTTCGACAAACTCCTCT 3304
Query 3280 GCAAGCTCTAGTGGTACAATGAGCTCTCCCCTATTTGGGACAAGCTGGCAAGCTCCCAAC 3339
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3305 GCAAGCTCTAGTAGTACAATGAGCTCTCCCCTATTTGGGACAAGCTGGCAAGCTCCCAAC 3364
Query 3340 TCTGCTCCAAACTCTGCTCCAGTCTTCAGTTCCTCGTTCACCACTTCTTCAAATCCT--- 3396
||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 3365 TCTTCTCCAAACTCTGGTCCAGTCTTCAGTTCCTCGTTCACCACATCTTCAACTCCTACC 3424
Query 3397 ACCTTTTCCTTTGGAGGATCTTCTGCTGCTACTGCTTT-GAGCACT-CCAGCTCCCATTT 3454
|||||||||||||||||||||||||||||||||| ||| ||||||| | | |||||||||
Sbjct 3425 ACCTTTTCCTTTGGAGGATCTTCTGCTGCTACTG-TTTCGAGCACTACTA-CTCCCATTT 3482
Query 3455 TTGGTGCATCTA-C--CAACACCCCGTCACCTTCGCCTATCTTTGGTTTCGGCTCAACCG 3511
|||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 3483 TTGGTGCATCTACCAACAACACCCCGTCACCTTCACCTATCTTTGGTTTCGGGTCAACCC 3542
Query 3512 CTCCTACCACTCCCCAGCAGCCGGTATTTGGTAACTCAGCGACTCCATCACAGTCTCTGT 3571
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3543 CTCCTACCACTCCCCAGCAGCCGGTATTTGGTAACTCAGGGACTCCATCACAGTCTCTGT 3602
Query 3572 TTGGTAACTCAAATCCTGGGTTTGCATTTGGTGCAGCTAATAATACAAATGGTATCAACA 3631
|||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3603 TTGGTAACTCAACTCCTGGGTTTGCATTTGGTGCACCTAATAATGGAAATGGTATCAACA 3662
Query 3632 ATAACCAACAAGTGAGCATGGAAGACAGTATGGCAGAAGACACAGACCAAGCTAATAAAG 3691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3663 ATAACCAACAAGTGAGCATGGAAGACAGTATGGCAGAAGACACAGACCAAGCTAATAGAG 3722
Query 3692 CATCCATGGCATCCCCAATGTTTGGACAAGCAGCTGTCTCGATACCTCAACCAAACTTTG 3751
|||| |||| | |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 3723 CATCTATGGTAGCCCCAATGTTTGGACAAGCAGCAGTCTCGATGCCTCAACCAAACTTTG 3782
Query 3752 CCTTTGGTGGAGGAGCAGCAACGCCGCCTCCATCAATGGCTAACCCGTTCCAGTTTGGAG 3811
|||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 3783 CCTTCGGTGGAGGAGCAGCAACGCAGCCTCCATCAATGGCAAACCCCTTCCAGTTTGGAG 3842
Query 3812 GCCAACCGATGGGAAGCACGTCACAGAACGCATCACCTTTCCAGGCATCACAGAGTCTAG 3871
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3843 GCCAACCAATGGCAAGCACGTTACAGAACGCATCACCTTTCCAGGCATCACAGAGTCTAG 3902
Query 3872 AGTTCCAAGGAGGGGGGAGCTTTTCACTAGGCAGCACTGGAGGCGGAGATAAGTCAGGCC 3931
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 3903 AGTTCCAAGGAGGTGGGAGCTTTTCACTAGGCAGCACTGGAGGTGGCGATAAGTCAGGCC 3962
Query 3932 GCAGAATCTTCAAAGCAAAGAAATCCAACAGAAAGAAATAA 3972
||||||||||||||||||||||||||| ||| |||||||||
Sbjct 3963 GCAGAATCTTCAAAGCAAAGAAATCCACCAGGAAGAAATAA 4003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 197908590135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5