BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903960

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10750.1 | Symbols:  | FBD domain family | chr3:3366927-3368...   185    4e-46


> AT3G10750.1 | Symbols:  | FBD domain family | chr3:3366927-3368269 
FORWARD LENGTH=900
Length=900

 Score =  185 bits (100),  Expect = 4e-46
 Identities = 141/161 (88%), Gaps = 1/161 (1%)
 Strand=Plus/Plus

Query  373  CCACTTTCTTGGAACCAACCAAGTTCTGTACCGGGATGCTTGTTGTCTCGCCTTGACAAC  432
            ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| | |
Sbjct  721  CCACTTTCTTGGAACCAACCAAGTTCTGTACCGCGATGCGTGTTGTCTCACCTTGAGATC  780

Query  433  TTTGAGTGGATAGACTTTGGAGGATCAAGAGAAGAGAAACAATTTGTCGCTTACATCCTC  492
            || ||||||| |  ||||| ||||   ||||||||||||||| || | ||||||||||||
Sbjct  781  TTGGAGTGGAAACTCTTTGAAGGAAGGAGAGAAGAGAAACAACTTCTGGCTTACATCCTC  840

Query  493  GAAAACTCT-AAGTGTTTGAAGACGGTGGGAATCTCATTGA  532
            ||||||||| |||| |||||||||||||| ||||||| |||
Sbjct  841  GAAAACTCTGAAGTCTTTGAAGACGGTGGAAATCTCACTGA  881


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 144/177 (81%), Gaps = 9/177 (5%)
 Strand=Plus/Plus

Query  8    ATGGTTATGGTAGGTCATTGGTTATAGATTCCCCGGGATTAAAATACCTTAGAATCATTG  67
            |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  512  ATGGTTCTGGTAGGTCATTGGTTATAGATTCCCCGGGATTAAATTACCTTAGCATCATTG  571

Query  68   ACCACCCTTTAGGAAACAATATCTCGATCCAGAATATGCCATGCCTTTTATCGGCCGTGG  127
            ||  |  |||||||  |||| |||| |||||||||||||||||||||  |  |||| | |
Sbjct  572  ACT-C--TTTAGGAGGCAATTTCTCCATCCAGAATATGCCATGCCTTGAAAAGGCCATCG  628

Query  128  TTTTCC---GTACTC---ACGTGAAAGACAAGTTTCTGACATCCTTGTCATCTGTCA  178
            ||| ||   ||  |    ||  ||| ||||||||||||||||| || || |||||||
Sbjct  629  TTTCCCTCTGTGGTTTTTACCCGAATGACAAGTTTCTGACATCTTTCTCCTCTGTCA  685



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30391658935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5