BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903963
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10780.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 678 0.0
> AT3G10780.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr3:3375107-3376334 FORWARD LENGTH=708
Length=708
Score = 678 bits (367), Expect = 0.0
Identities = 413/435 (95%), Gaps = 4/435 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCTCACCCGTACTATTCATTGGTTTGATGTGCCTCGCAGGCGGTGGCTCTATT 60
|||||||||||||| |||||||||||||||||||| | |||||| |||||||||||| ||
Sbjct 55 ATGGCGATCTCACCGGTACTATTCATTGGTTTGATTTACCTCGCCGGCGGTGGCTCTCTT 114
Query 61 TTTCCGGCGGTGGAGGCAATATGGTTAACGGTTCCA-ACTTCAGGAGAGAGATGCGTCTA 119
||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 115 TTTCCGGGGGTGGAGGCAATATGGTTAACGGTTCCAGA-ATCAGGAGAGAGATGCGTCTA 173
Query 120 CGAAGACATCCAAGCCAACGTGGTCGTTGTCCTCGATTACATTTGCATCGACGAGT-CTT 178
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 174 CGAAGAGATCCAAGCCAACGTGGTCGTTGTCCTTGATTACATTTGCATCGACGA-TGCTT 232
Query 179 TCACTCAACTTGGTCCAACATTAGATGTTCGGGTAACATCTCCGTATGGTAAGGAACTAT 238
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 233 TCACTCAACTTGGTCCAACATTAGATGTTCGGGTAACATCTCCATATGGGAAGGAACTGT 292
Query 239 ACAAGATAGCAAACGTGACTCACGGTCAGGCTGCCTTTACAACGAGCGAGAGTGGAACAT 298
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 293 ACAAGATAGCAAACGTGACACACGGTCAGGCTGCGTTTACAACGAGCGAGAGTGGAACAT 352
Query 299 TCTTAGCTTGTTTAGCAATGCATCACGACCAGACACATCACTCAGTCAATAACTCTGTTA 358
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 353 TCTTAGCTTGTTTAGCAATGCATCACGACCAGTCACATCACTCAGTCAATAGCTCTGTTA 412
Query 359 TCGTCAGTCTTGATTGGAAGATGGGTATCAGAGCCAAAGACTGGGATTCTGTTGCCAAGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 413 TCGTCAGTCTTGATTGGAAGATGGGTATCAGAGCCAAAGACTGGGATTCTGTTGCTAAAA 472
Query 419 AAGAAAAGATCGAGG 433
|||||||||||||||
Sbjct 473 AAGAAAAGATCGAGG 487
Score = 305 bits (165), Expect = 3e-82
Identities = 206/225 (92%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 463 GGTGTGGAGCTTGAGATTCGAAAATCTACAGAATACGCAAGTGCTATTAGGGCCAACATA 522
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 487 GGTGTGGAGCTTGAGATTCGAAGATCTACAGAATACGCAAGTGCTATTAGGGCCAACATA 546
Query 523 CTCTATTTGAGAATCAGGGAAGCATATATGAGGGAAATAAACGAGAAGACAAAC-CAGAG 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 547 CTCTATTTGAGAATCAGGGAAGCATATATGAGGGAAATAAACGAGAAGACAAACAC-GAG 605
Query 582 GGT-AGCTCAGCTCGGCTTTATGTCTTTCGGACTAGCTTTTGGCGTTTC-ACTTATTCAA 639
||| | |||||||||||| |||||||| ||| ||||| ||| |||||| | ||| ||||
Sbjct 606 GGTCAA-TCAGCTCGGCTTAATGTCTTTAGGAGTAGCTATTGTCGTTTCGA-TTAGTCAA 663
Query 640 GTTTGGCATCTCAAACGCTTCTTCCTCAAAAAGAAGCTTCTTTAA 684
|||| | |||||||||| | ||||||||||||||||||| |||||
Sbjct 664 GTTTTGTATCTCAAACGATACTTCCTCAAAAAGAAGCTTATTTAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5