BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903974
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10890.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1882 0.0
AT3G30540.1 | Symbols: | Glycosyl hydrolase superfamily protei... 719 0.0
> AT3G10890.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:3407455-3409000 REVERSE LENGTH=1245
Length=1245
Score = 1882 bits (1019), Expect = 0.0
Identities = 1168/1240 (94%), Gaps = 9/1240 (1%)
Strand=Plus/Plus
Query 10 TTGTGTCTTATCGTGTTTTTAGCGATTGTGATCGCACAAAACTCTAGCTATCTAGGAGTA 69
|||||| || ||||| ||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 10 TTGTGTTTTGTCGTGCTTTTAGCAATTCTGATCGCACAAAACTCTAGCGATCTAGGAGTA 69
Query 70 AAAGCTGTATCGAGTGATGGGTTCGTGAGTAGGAAAGGCGTCCAATTTATTCTCAATGGG 129
||| ||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 70 AAATCTGCGTCGAGTGATGGCTTCGTGAGTAGAAAAGGCGTCCAGTTTATTCTCAATGGG 129
Query 130 AAACCATTTTATGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATCCG 189
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 130 AAACCATTTTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATTCG 189
Query 190 ACCACAAGGTTTAAGATCACTTATGTGTTCCAAAATGCGACCATTCACGGTTTGACCATC 249
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 190 ACCACAAGGTTTAAGATCACTTATGTGTTTCAAAATGCAACCATTCACGATTTGACCATC 249
Query 250 GCCCGTACCTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTTCAAATCGCCCCTGGTGTC 309
| ||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 250 GTCCGCACTTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTCCAAATTGCCCCTGGTGTC 309
Query 310 TATGATGAAAAAACTTTTCAGGGTTTGGATTTTGCGATAGCAGAAGCAAAAAGACTCGGC 369
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 310 TACGATGAAAAAACTTTTCAGGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGT 369
Query 370 ATAAAAATGATTATCACCTTTGTCAATAACTATTCTGACTTCGGTGGGAGGAAACAATAC 429
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 370 ATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAGGGAGGAAACAATAC 429
Query 430 GTGGATTGGGCTAAAACCACAGGCCAAAACGTATCTTCAGATGACGATTTCTACACAAAC 489
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GTTGATTGGGCTAAAAACACAGGCCAAAACGTATCTTCAGATGACGATTTCTACACAAAC 489
Query 490 CCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTATGGTGAACAGAGTGAATACC 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTATGGTGAACAGAGTGAATACA 549
Query 550 TTTACCAAAGTTGCA-TACAAAGATGAACCAACCATTATGGGTTGGGAGCTTATGAACGA 608
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTTACCAAAGTTG-AGTACAAAGATGAACCAACCATTATGGGTTGGGAGCTTATGAACGA 608
Query 609 GCCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTATGGCTTGGATTAATGAAATGGC 668
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 609 ACCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTACGGCTTGGATGAATGAAATGGC 668
Query 669 TCCTTATGTGAAATCAGTTGATTCAAAGCATCTCCTCTCTACTGGTCTTGAAGGCTTTTA 728
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 669 TCTTTATGTGAAATCTGTTGACTCAAAGCATCTCCTCTCTACTGGTCTTGAAGGCTTCTA 728
Query 729 TGGTGACTCATCTCCTCAAAGAATGACATCTCTAAATCCAGTTGCAGCCAACGTTCTTGG 788
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 729 TGGTGACTCATCTCCTCAAAGAAAGACATCTCTAAATCCGGTTGCAGCCAACGTTCTTGG 788
Query 789 AACTGATTTCATCGCTAATCACAATCTCGATGCCATTGATTTTGCATCGATTCACTCTTA 848
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 789 AACTGATTTCATCGCTAATCACAAACTCGATGCCATTGATTTCGCATCGATTCACTCTTA 848
Query 849 CCCTGACTTATGGTTTCCAAACTTGGATGAGAAATCTCGATTGGACTTCTTAAGAAAATG 908
||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 849 CCCCGACTTATGGTTTCCAAACTTGGATGAGAAATCTCGATTAAACTTGTTAAGAAAATG 908
Query 909 GCTCGTA-GACCACCTCGAAGATGCTCAGAACATACTTCGAAAACCTCTAATCCTAGGAG 967
||||| | | | |||| |||||||| || ||||| ||| ||||||||||||||||||||
Sbjct 909 GCTCGAATGTC-ACCTTGAAGATGCACAAAACATTCTTAAAAAACCTCTAATCCTAGGAG 967
Query 968 AATTCGGGAAGCCAACGAACATACCAGGCTACACTCAGGCTCAGAGAGACGCCGTGTTCA 1027
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 968 AATTCGGGAAACCAACGAACACACCAGGCTACACTCAGGCTCAGAGAGACGCAGTGTTCA 1027
Query 1028 ACGCAACGTTTGACACCATTTACGAGTCTGCTCAAAAAGGCGGCCCAGCCGCAGGAGCAT 1087
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 1028 ACGCAACGTTTGACACCATTTACGAGTCTGCTGAAAAAGGCGGTCCAGCTGCAGGAGCAT 1087
Query 1088 TGTTTTGGCACGTTATTAGCGATGGCATGAACAACTTTAAAGATCCCCTCTCCATTGTAC 1147
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1088 TGTTTTGGCACGTTATTAGCGATGGCATGAACAACTTTAAAGACCCCCTCTCCATTGTAC 1147
Query 1148 TTAGTGAAAATTCGACGACGGTTAATATTATAACTGAGGAGTCACGAAAGCTGGGTTTGA 1207
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1148 TTAGTGAAAATTCGACTACGGTTAATATTATAACTGAGGAATCACGAAAGCTGGGTTTGA 1207
Query 1208 TTCGTGGAAAAGG---GTTATCaaaaaaaCTAAAATTTAA 1244
||||||||||||| ||||||||||| |||||||||||
Sbjct 1208 TTCGTGGAAAAGGAAAGTTATCAAAAA--CTAAAATTTAA 1245
> AT3G30540.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:12144792-12146502 REVERSE LENGTH=1017
Length=1017
Score = 719 bits (389), Expect = 0.0
Identities = 643/765 (84%), Gaps = 19/765 (2%)
Strand=Plus/Plus
Query 352 GAAGCAAAAAGACTCGGCATAAAAATGATTATCACCTTTGTCAATAACTATTCTGACTTC 411
|||||||||||| |||| |||||| |||| ||| || |||||||||| | ||||| |
Sbjct 262 GAAGCAAAAAGAGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGACTAC 321
Query 412 GGTGGGAGGAAACAATACGTGGATTGGGCTAAAACCACAGGCCAAAACGTATCTT-CAGA 470
|| |||| |||||||||||||||||||||| || | |||| ||| ||||||| || |
Sbjct 322 GGAGGGAAAAAACAATACGTGGATTGGGCTAGAAGTAAAGGCGAAATGGTATCTTCCA-A 380
Query 471 TGACGATTTCTACACAAACCCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTAT 530
|||||||||||||| |||||| || ||||| ||| ||||||||||||||||||||||||
Sbjct 381 TGACGATTTCTACAGAAACCCAGTTATTAAAGAGTTCTACAAGAACCACGTCAAGACTAT 440
Query 531 GGTGAACAGAGTGAATACCTTTACCAAAGTTGCATACAAAGATGAACCAACCATTATGGG 590
| |||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||
Sbjct 441 GTTGAACAGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCAGCCAGTATGGC 500
Query 591 TTGGGAGCTTATGAACGAGCCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTATGGC 650
|||| |||||||||||||||||| |||| | | ||| |||||||||||||||||||||
Sbjct 501 TTGGCAGCTTATGAACGAGCCACGATGCGGTGTGGATAGAAGTGGAAAAACCCTTATGGC 560
Query 651 TTGGATTAATGAAATGGCTCCTTATGTGAAATCAGTTGATTCAAAGCATCTCCTCTCTAC 710
|||||||||||||||||||| || ||| |||||||||||| |||| ||||||||||||||
Sbjct 561 TTGGATTAATGAAATGGCTCTTTTTGTAAAATCAGTTGATCCAAACCATCTCCTCTCTAC 620
Query 711 TGGTCTTGAAGGCTTT-TATGGTGACTCATCTCCTCAAAGAATGACAT-CTCTAAATCCA 768
||||| |||||| ||| |||||||||||||||||| |||||| || || | |||||||||
Sbjct 621 TGGTCATGAAGG-TTTCTATGGTGACTCATCTCCTGAAAGAAAGA-ATTCACTAAATCCA 678
Query 769 GTTGCAGCCAACGTTCTTGGAACTGATTTCATCGCTAATCACAATCTCGATGCCATTGAT 828
||| |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 679 GTTTCAGCCAACACAGTTGGAGCTGATTTCATAGCTAATCACAATATCGATGCCATTGAT 738
Query 829 TTTGCATCGATTCACTCTT-ACCCTGACTTATGGTTTCCAAAC-TTGGATGAGAAATCTC 886
|| |||||||| |||| | | |||||||||||||| ||| |||||| |||| ||||
Sbjct 739 TTCGCATCGATGCACTGTGGAAG-TGACTTATGGTTTC-AAAGGTTGGATCAGAACTCTC 796
Query 887 GATTGGACTTCTTAAGAAA-ATGGCTCGTAGACCACCTCGAAGATGCTCAGAACA-TACT 944
|||||| |||| ||| ||| |||||| | || |||| |||||||||| || |||| | ||
Sbjct 797 GATTGGCCTTCATAA-AAAGATGGCTTGAAGGCCACATCGAAGATGCGCAAAACAAT-CT 854
Query 945 TCGAAAACCTCTAATCCTAGGAGAATTCGGGA-AGCCAAC-GAACATACCAGGCTACACT 1002
| ||||||| |||| |||| |||||||||| || | | || || |||| ||||||||
Sbjct 855 TAAAAAACCTGTAATTCTAGCAGAATTCGGGTTAGG-ATCAGA-CACACCACGCTACACT 912
Query 1003 CAGGCTCAGAGAGACGCCGTGTTCAACGCAACGTTTGACACCATTTACGAG-TCTGCTCA 1061
| |||| | ||||||| |||||||| | |||| | ||||| ||||||||| ||| | ||
Sbjct 913 CTGGCTAATAGAGACGACGTGTTCACCACAACATATGACATCATTTACGATATCTACGCA 972
Query 1062 AAAAGGCGGCCCAGCCGCAGGAGCATTGTTTTGGCACGTTATTAG 1106
|||||||||| | ||||| ||||||||||||||| | ||||||||
Sbjct 973 AAAAGGCGGCTCGGCCGCGGGAGCATTGTTTTGGGAGGTTATTAG 1017
Score = 265 bits (143), Expect = 9e-70
Identities = 193/216 (89%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 10 TTGTGTCTTATCGTGTTTTTAGCGATTGTGATCGCACAAAACTCTAGCTATCTAGGAGTA 69
|||||| |||||||| ||||||||||||||||||||| || |||||| ||||||||
Sbjct 37 TTGTGTTTTATCGTGCTTTTAGCGATTGTGATCGCAC--AA----AGCTATGTAGGAGTA 90
Query 70 AAAGCTGTATCGAGTGATGGGTTCGTGAGTAGGAAAGGCGTCCAATTTATTCTCAATGGG 129
|||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 91 GAAGCTGCGCCAAGTGATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAATGGG 150
Query 130 AAACCATTTTATGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATCC- 188
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 151 AAACCATTTTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCTACCGATCCA 210
Query 189 GACCACAAGGTTTAAGATCACTTATGTGTTCCAAAA 224
| ||||||| |||||||||||| ||||||| |||||
Sbjct 211 G-CCACAAGATTTAAGATCACTAATGTGTTTCAAAA 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5