BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903977
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10915.5 | Symbols: | Reticulon family protein | chr3:34159... 926 0.0
> AT3G10915.5 | Symbols: | Reticulon family protein | chr3:3415975-3417788
REVERSE LENGTH=1167
Length=1167
Score = 926 bits (501), Expect = 0.0
Identities = 543/564 (96%), Gaps = 0/564 (0%)
Strand=Plus/Plus
Query 112 GCTGCTGACTTGCTCTTATGGAGGAGACGACATCTTTCTTTGGGTGTTATCATTATATCA 171
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 478 GCTGCTGACTTGCTCTTATGGAGGAGGCGACATCTTTCTTTGGGGGTTATCATTATATCA 537
Query 172 ACTGTAGCCTGGCTTATATTCGAGTTTTCCGGGTTGCCTTTCTTATCTGTTTCTTCAGAT 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 ACTGTAGCCTGGCTTATATTCGAGTTTTCCGGGTTGCCTTTCTTATCTGTTTCTTCGGAT 597
Query 232 GTCTTACTCATCGGGATCATAATATCGTTCGTCCATGCCCGGGTTTCTGCTTTTAGGAAA 291
||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 598 GTCTTACTCATCGTGATCATGATATCATTCGTTCATGCCCGGGTTTCTGCTTTTAGGAAT 657
Query 292 AGACAGTTGCATTCGTTGCCAGAGCTTGTTCTATCAGAGGAAATGGTGAATAGTGCCGCA 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 AGACAGTTGCATTCGTTGCCAGAGCTTGTTCTATCAGAGGAAATGGTGAATAGTGCTGCA 717
Query 352 GCTTCGTTCCGTATAAAACTCAATCACTTGCTTGTAATGGCTCATGATATCACAGTTGGC 411
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GCTTCTTTCCGTATAAAACTCAATCACTTGCTTGTAATGGCTCATGATGTCACAGTTGGC 777
Query 412 AATGATTTTCGACTCTTCTTCAAGCAGGTGGTGATTTGTCTGTGGCTTCTTTCTGCCATT 471
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 AACGATTTTCGACTCTTCTTCAAGCAGGTGGTGATTTGTCTGTGGCTTCTCTCTGCCATT 837
Query 472 GGTAGCTATATATCTCTCTGCACTCTTGTTTATATCGGGACAATCCTATCTGTAACAATA 531
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 838 GGTAGCTATATATCTCTCTGCACTCTTCTTTACATCGGGACCATCCTATCTGTAACAATA 897
Query 532 CCCGCTTTGTACAGTAAATATCAAAGCAAAGTAGACAAGTGTTGCGGGACGATACACAGG 591
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 CCGGCTTTGTACAGTAAATATCAAAGCAAAGTAGACAAGTGTTGCGGGACGATTCACAGG 957
Query 592 CGGTTGTCTCACCACTACAAAATAGTGGACGAAAATGTTATAAGCAGACTCTCATGGAGC 651
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 CGGTTGTCTCACCACTACAAAATAGTAGACGAAAATGTTATAAGCAGACTCTCATGGAGC 1017
Query 652 TTAACCAACGATAAAGATTCATGA 675
||| |||| |||||||||||||||
Sbjct 1018 TTATCCAAGGATAAAGATTCATGA 1041
Score = 176 bits (95), Expect = 2e-43
Identities = 106/111 (95%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 1 ATGGACAGTTTAAGTGACATCGATGGTGATTGCGATGGAAGAAATGAAGGAGGATCGTCA 60
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 292 ATGGATAGTTTAAGTGATATCGATGGTGATTTCGATGGAAGAAATGAAGGAGGATCGTCA 351
Query 61 TCGGATTATCGATTGTTGGGTCGGCA-AGTTACGGTTCATCAGTTCATGGG 110
|||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 352 TCGGATTATCGATTGTTGGGTCGGCAGA-TTACGGTTCATCAGTTCATGGG 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5