BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903984
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10970.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1862 0.0
> AT3G10970.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr3:3433098-3436279 REVERSE LENGTH=1478
Length=1478
Score = 1862 bits (1008), Expect = 0.0
Identities = 1069/1099 (97%), Gaps = 2/1099 (0%)
Strand=Plus/Plus
Query 1 ATGGACTGCTCATGCAGTACTCGTCCTTCGTCTCTGCTCATCTCTTCCGAGCCATCTTTT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 203 ATGGACTGCTCATGCAGTACTCGTCCTTCGTCTCTGCTTATCTCTTCCGAACCATCTTTT 262
Query 61 CGCTTTCCTCACTCTAATTTCTCCAAAAATCTCAGCTTTCAGATACCGAAAGATACGAAG 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 263 CGCTTTCCTCACTCTAATTTCTCCTCGAATCTCAGCTTTCAGATACCGAAAGATACGAAG 322
Query 121 TTGGTGAAGCAGCGTTTGGTAGTGAGAAGTTCTTCTGGGTCTGATTATCAAAACGGCGAC 180
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 323 TTGGTGAAGCAGCGTTTGGTAGTGAGAAGTTCCTCTGGTTCTGATTATCAAAACGGCGAC 382
Query 181 GTTAATGGGTTTCCTCTCAAACCAAACAAACTCTTTATGCAAGAGGCGATTGGAGCTGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GTTAATGGGTTTCCTCTCAAACCAAACAAACTCTTTATGCAAGAGGCGATTGGAGCTGAG 442
Query 241 TATGGAGAAGGGTTTGAGACTTTTAGACAGGATGGCCCTCTTAAAGTGGATGTGGATTTC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 443 TATGGAGAAGGGTTTGAGACTTTTAGACAGGATGGTCCTCTTAAAGTGGATGTGGATTTC 502
Query 301 TGGAATGAGAAACTGCAAGATGGTTTTCTTCAAAGAATACGTTACGCAATGAAACCAGAT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TGGAATGAGAAACTACAAGATGGTTTTCTTCAAAGAATACGTTACGCAATGAAACCAGAT 562
Query 361 GAAGCGTATGGACTTATTTTCTCTTGGGACAATGTCGTGGCTGATACTCGAAGACTTAAG 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 563 GAAGCCTATGGACTTATTTTCTCTTGGGACAATGTCGTGGCTGATACTCGAAGTCTTAAG 622
Query 421 TTGGAAGCTTGGAAGCAGCTCGCTTCAGAAGAAGGAAAAGAAATTACGGAGGAGGTTGAC 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 623 TTGGAAGCTTGGAAGCAGCTCGCTGCAGAAGAAGGAAAAGAAATTACGGAGGAGGTTGAC 682
Query 481 ATTCAAAGACTGATGCTTTATGCCGGCGCTGACCATGTTCTTAGTAAGGTGTTGTATTGG 540
|| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 683 ATCCAAAGACTGATGCTTTATGCCGGCGCTGACCATGTGCTTCGTAAGGTGTTGTTTTGG 742
Query 541 GAGAAAACGCAAAGCAAAATCGACAGATTGAAACTCAGGCTATCGGAAATATATTACGAT 600
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 743 GAGAAAACGCAAAGCAAAATTGATAGATTGAAACTCAGGCTATCGGAAATATATTATGAT 802
Query 601 AGTCTTCTCAAACTCATAGAACCAAAAGAAGGACTTAGAGATTGGCTCGACGCTGTTACA 660
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 803 AGTCTTCTCAAACTCACAGAACCAAAAGAAGGACTTAGAGATTGGCTTGACGCTGTTACA 862
Query 661 ACTGCTCGCATTCCCTGTGCTGTTGTCTCAAATCTTGATCGAAAAAACATGATCAATGCT 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 863 ACTGCTCGCATTCCCTGTGCTGTTGTCTCAAATCTTGATCGGAAAAACATGATCAATGCT 922
Query 721 CTTGACCGGATGGGACTTCAAAAGTATTTCCAGGCGA-TGGTTTCCGAGGAAGATGGTAT 779
||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 923 CTTGAACGGATGGGACTTCAAAAGTATTTCCAGGC-AGTGGTTTCCGAGGAAGATGGTAT 981
Query 780 GGAATCGATAGCTCACAGATTTCTTTCTGCGGCTGTGAAGTTGGATAGAAAACCGTCGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGAATCGATAGCTCACAGATTTCTTTCTGCGGCTGTGAAGTTGGATAGAAAACCGTCGAA 1041
Query 840 ATGTGTTGTGTTTGAGGATGATCCTAGGGGTATAACTGCGGCTCACAACTGTACAATGAT 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1042 ATGTGTTGTGTTTGAGGATGATCCTAGGGGTATAACCGCGGCTCACAACTGTACAATGAT 1101
Query 900 GGCAGTTGGATTAATCGGTGCTCATCGGGCGTATGATCTGGTTCAGGCTGATCTTGCAGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GGCAGTTGGATTAATCGGTGCTCATCGGGCGTATGATCTGGTTCAGGCTGATCTTGCAGT 1161
Query 960 TGGAAACTTTTACGAGCTATCTGTGATAAACCTCAGAAGATTATTTGCAAACAAAGGCTC 1019
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1162 TGGAAACTTTTACGAGCTATCTGTGATAAACCTCAGGAGATTATTTGCCAACAAAGGCTC 1221
Query 1020 TACATTTATGGATCACGAGAAACAGATCATAGAAAAATCGCCGCCGAAAAGAAAGCTAAC 1079
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1222 TACATTTATGGATCACGAGAAACAGATCATAGAAAAATCGCCGCCCAAAAGAAAGCTTAC 1281
Query 1080 CATTGATACCATATTCTAA 1098
|||||||||||||||||||
Sbjct 1282 CATTGATACCATATTCTAA 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5