BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904015
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11380.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1493 0.0
AT3G11350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 178 2e-43
> AT3G11380.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:3564079-3565779 FORWARD LENGTH=1626
Length=1626
Score = 1493 bits (808), Expect = 0.0
Identities = 1338/1587 (84%), Gaps = 64/1587 (4%)
Strand=Plus/Plus
Query 1 ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCATGAGGCATAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60
Query 61 CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT 120
|||||| | ||||||||||||| |||| ||| ||||||||||||| |||||||||||||
Sbjct 61 CCTCGATTTTTCTGCTCCTACACCAACGTAACACTATCGTCTCCGGCGACGAACCAAACT 120
Query 121 CTGCTGAGTCGAATCGAATCGGCTGCTGATCAAAAAGCAGCAATCACTACGGTGCTTGAG 180
|||| |||||| |||||| ||||| | |||| ||||||| |||||| ||||||||||||
Sbjct 121 CTGCAGAGTCGGATCGAAGCGGCTTCACATCAGAAAGCAGAAATCACAACGGTGCTTGAG 180
Query 181 GAATGG--AGA-CAACAGCAAAAACATGGGAATCATCAATTAAACCCTTCGTTGGTGAA- 236
||||| | | ||||| ||| |||| ||||| || |||||||||||||| | ||
Sbjct 181 CAATGGCTACAGCAACAACAACAACAGGGGAAGCAG---TTAAACCCTTCGTTATT-AAG 236
Query 237 AGGTATAGTCGAGAAGCTCC-ACGATTCCAAGAGATATCGTCAAGCCCTAGAGGTATCAA 295
||| || |||||||||||| | | ||| || || ||| ||||||||||||||||||
Sbjct 237 AGGAATCGTCGAGAAGCTCAGAAG-TTCTAACCGACCTCGCCAAGCCCTAGAGGTATCAG 295
Query 296 ACTGGATGATTGaaaaaaaGATCTGCAATCACCTTCCGGAAGATCT-CGCAGTTCGATTT 354
|||||||| | ||| ||||||| | ||||| || | |||||| || | ||| | |||||
Sbjct 296 ACTGGATGGTCGAACAAAAGATGTACAATCTCC--C-GGAAGA-CTTCTCAGCTAGATTT 351
Query 355 CATCTGATTGAGAACGTTTTGGGATTAG-AAGAAGCAGAGAAGTTCTTCCAAAGCATCCC 413
||||||| |||||| ||||| ||| | ||||||||||||||||||| | ||||||||
Sbjct 352 CATCTGACTGAGAAGGTTTTAA-ATTTGGAAGAAGCAGAGAAGTTCTTTGAGAGCATCCC 410
Query 414 GGAGAATCTGAAAGGT-GAATCTATCTACACTTCTCTGTTAAAGA-GTTACGCAA-A-A- 468
||||||| ||| | | || || || |||| |||||| |||| || ||||||||| | |
Sbjct 411 GGAGAATATGAGAT-TCGAGTCAATGTACAATTCTCTATTAA-GAAGTTACGCAAGACAA 468
Query 469 TCGGGAGAAATATCTTT-ACGTAAAGCCGAATATACTTTCGAGAAGATGAGGAAGCTAGG 527
|| ||||||| | || | | | |||||||||| | |||| ||||||||| |||||||||
Sbjct 469 TCCGGAGAAAAAGCTCTGAAG-AAAGCCGAATCTGTTTTCAAGAAGATGAAGAAGCTAGG 527
Query 528 -TATGCTCTTGAGACCATCACCTTACAACTCCATGGTC-TCACTCTACAGCTCTCTCAGA 585
| ||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||| ||
Sbjct 528 GT-TGCTCTTGAGACCTTCACCGTACAACTCGATGA-CATCACTCTATAGCTCTCTCGGA 585
Query 586 AACAGAAATAAGGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACCTTGAGCTCGAT 645
|||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 586 AACAGAGATAAAGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACGTTGAGCTCGAT 645
Query 646 AGTCCCACCGTGAACAACGCTTTACGAGTATACGCTGCTGTTTGTGATGTTGCGACAATG 705
| | |||||||||||||||||| ||||||||||||||||| | |||||| |||||||||
Sbjct 646 AATGTCACCGTGAACAACGCTTTGCGAGTATACGCTGCTGTATCTGATGTAGCGACAATG 705
Query 706 GACAAGTTTCTAGCTGATTGGAATGCA-ATTACAACGCTTGAGTGG-CTCACAACACTTG 763
|||||||||||||||||| |||| | | ||||||| |||||| ||| ||||||| ||||
Sbjct 706 GACAAGTTTCTAGCTGATAGGAAAG-AGATTACAAGGCTTGA-TGGGCTCACAATGCTTG 763
Query 764 AAATGGCAAAGGCTTATAGA-CTCATAAGGCTATATGGTGAAGCAGGGGAGAGAGATGAT 822
||||||||||||||| || ||||| || ||||||||||||||||| |||| ||| |||
Sbjct 764 CGATGGCAAAGGCTTAT-GAACTCATGAGCCTATATGGTGAAGCAGGAGAGATAGAAGAT 822
Query 823 GTTTACCGTATATGGGACTTGTACAAGAAC-ACAAAAGAGAAGGACAATGAAGGATTTCG 881
||| ||||| |||||||| ||||||| | |||| | ||||||| ||||||| ||||||
Sbjct 823 GTTCACCGTGTATGGGACAAGTACAAGG-CGACAAGACAGAAGGATAATGAAGAATTTCG 881
Query 882 AGCTTTGATTGGTTCTCTCTTGAAGCTTGATGATATCAACGGAGCAGAGAAGATATACTA 941
| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 882 AACTTTGATTGGTTCTCTCTTGAAGCTTGGTGATACCAAAGGAGCAGAGAAGATATACTA 941
Query 942 CGATGAGTGGGAGTCCTCTGGTCTTGAGTTCGATCTCCGAATCCC-GACTATGTTGATGT 1000
| |||||||||||| ||| ||||||||||| ||| ||||||||| || ||||||| |||
Sbjct 942 CAATGAGTGGGAGTGCTCCGGTCTTGAGTTTGATAACCGAATCCCCGA-TATGTTGGTGT 1000
Query 1001 CTGGTTATCGCGCAAAGGGAATGGTGAAGAAGGCAGATAAACTATTGTACAAGACTATGA 1060
| |||||||||| |||||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 1001 CGGGTTATCGCGAAAAGGGAATGGTGATGAAGGCAGATAAACTGGTGAACAAGACTTTGT 1060
Query 1061 AGAATAAAAG-ATTGGTTATATCGATTAATCCATTTGTTG-AGGAATTGG-TGAAAAATA 1117
|| | | || ||||| || | | || | || || | || | ||| ||| | |||||
Sbjct 1061 GGA-TCAGAGGATTGGCTACACCAATCACTCTGTT-GCTGGAAGAAATGGAT-AAAAAGG 1117
Query 1118 GAAACCAAGTGAAG-CCGTCGGACTTGAGAGACCTCATCAAGAATCTGCGTGACTCAAAT 1176
| || |||||| | ||| ||| |||||||||||||||||||||||| ||||| ||||||
Sbjct 1118 GGAATAAAGTGA-GTCCGCCGGGCTTGAGAGACCTCATCAAGAATCTACGTGATTCAAAT 1176
Query 1177 CAATTATCTAAAGCACTTGAGGCATCAACATGGATGTGTGAAAAAAGGG-GTTTTAATCT 1235
|| || || |||||||||||||||||||||||||||||| |||||| || |||| |||||
Sbjct 1177 CAGTTGTCCAAAGCACTTGAGGCATCAACATGGATGTGTCAAAAAAAGGTGTTT-AATCT 1235
Query 1236 -TTTTCCAGAAGATTATGCAATTAGGTTTCATCTGATTGAGAAAGTGTTGGGATTGGAGG 1294
||||| |||||||||||||| ||| ||||||||| ||||||||||||||| |||||||
Sbjct 1236 CTTTTC-AGAAGATTATGCAACAAGGCTTCATCTGACTGAGAAAGTGTTGGGTTTGGAGG 1294
Query 1295 AAGCAGAGAAGTTTTTCGAAAGCAGCATCCCGAAGAACATGAAGGATTACTCTGTCTACG 1354
|||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1295 AAGCAGAGAACTTTTTCGAAAGCAGCATCCCGGAGAATATGAAAGATTACTCTGTCTACG 1354
Query 1355 ATACACTCTTAACCTCGT-ACACAAGATCT-GACAAAACTCTA-GTCAAAGCGGAAGGCG 1411
|||||||||||| || || | |||||||| | ||| |||| | || ||||| |||| ||
Sbjct 1355 ATACACTCTTAAGCT-GTTATGCAAGATCTAG-CAACACTCAAAGT-AAAGCTGAAGCCG 1411
Query 1412 TTTTCGAGAAGATGAGAGAGCTAGGTTTCCTCTCAAAACTTTCCCCATTCAACTCGATAA 1471
|||||||||||||||||||||||||||| | || ||||||||||||||||||||| | |
Sbjct 1412 TTTTCGAGAAGATGAGAGAGCTAGGTTTACAATCCAAACTTTCCCCATTCAACTCGTTGA 1471
Query 1472 TATCTCTCTACATTGAGCAAAGGAAACTAAGTAAGGTCAATA-AGCTTCTATGTGATATG 1530
|||||||||||| || |||| ||||||||||| |||||||| | |||||||||||||||
Sbjct 1472 TATCTCTCTACAGTGGGCAAGGGAAACTAAGTGTGGTCAATATA-CTTCTATGTGATATG 1530
Query 1531 AAGCAGAATAATATATATAGAGCCTGA 1557
||||| ||| | |||||||||||||
Sbjct 1531 AAGCA---TAAGA-ATATAGAGCCTGA 1553
> AT3G11350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:3558495-3560078 FORWARD LENGTH=1080
Length=1080
Score = 178 bits (96), Expect = 2e-43
Identities = 147/169 (87%), Gaps = 13/169 (8%)
Strand=Plus/Plus
Query 1 ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAGCATGACGCTTAGTCTTCAGCGACACGCAAAGAGAATCCTCGCTTACAGTAACAGG 60
Query 61 CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT 120
|||||| ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 61 CCTCGATTCTTCTGCTCCTACAGAAACGGAACGCTATCG---------ACGAACCAAACT 111
Query 121 CTGC-TGAGTCGAATCGAATCGGCTGCT-GATCAAAAAGCAGCAATCAC 167
|||| || ||||||||||| | ||| | ||||| ||||||| ||||||
Sbjct 112 CTGCATG-GTCGAATCGAAGCTGCTT-TAGATCAGAAAGCAGAAATCAC 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5