BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904015 Length=1557 Score E Sequences producing significant alignments: (Bits) Value AT3G11380.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1493 0.0 AT3G11350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 178 2e-43 > AT3G11380.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:3564079-3565779 FORWARD LENGTH=1626 Length=1626 Score = 1493 bits (808), Expect = 0.0 Identities = 1338/1587 (84%), Gaps = 64/1587 (4%) Strand=Plus/Plus Query 1 ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGCATGAGGCATAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60 Query 61 CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT 120 |||||| | ||||||||||||| |||| ||| ||||||||||||| ||||||||||||| Sbjct 61 CCTCGATTTTTCTGCTCCTACACCAACGTAACACTATCGTCTCCGGCGACGAACCAAACT 120 Query 121 CTGCTGAGTCGAATCGAATCGGCTGCTGATCAAAAAGCAGCAATCACTACGGTGCTTGAG 180 |||| |||||| |||||| ||||| | |||| ||||||| |||||| |||||||||||| Sbjct 121 CTGCAGAGTCGGATCGAAGCGGCTTCACATCAGAAAGCAGAAATCACAACGGTGCTTGAG 180 Query 181 GAATGG--AGA-CAACAGCAAAAACATGGGAATCATCAATTAAACCCTTCGTTGGTGAA- 236 ||||| | | ||||| ||| |||| ||||| || |||||||||||||| | || Sbjct 181 CAATGGCTACAGCAACAACAACAACAGGGGAAGCAG---TTAAACCCTTCGTTATT-AAG 236 Query 237 AGGTATAGTCGAGAAGCTCC-ACGATTCCAAGAGATATCGTCAAGCCCTAGAGGTATCAA 295 ||| || |||||||||||| | | ||| || || ||| |||||||||||||||||| Sbjct 237 AGGAATCGTCGAGAAGCTCAGAAG-TTCTAACCGACCTCGCCAAGCCCTAGAGGTATCAG 295 Query 296 ACTGGATGATTGaaaaaaaGATCTGCAATCACCTTCCGGAAGATCT-CGCAGTTCGATTT 354 |||||||| | ||| ||||||| | ||||| || | |||||| || | ||| | ||||| Sbjct 296 ACTGGATGGTCGAACAAAAGATGTACAATCTCC--C-GGAAGA-CTTCTCAGCTAGATTT 351 Query 355 CATCTGATTGAGAACGTTTTGGGATTAG-AAGAAGCAGAGAAGTTCTTCCAAAGCATCCC 413 ||||||| |||||| ||||| ||| | ||||||||||||||||||| | |||||||| Sbjct 352 CATCTGACTGAGAAGGTTTTAA-ATTTGGAAGAAGCAGAGAAGTTCTTTGAGAGCATCCC 410 Query 414 GGAGAATCTGAAAGGT-GAATCTATCTACACTTCTCTGTTAAAGA-GTTACGCAA-A-A- 468 ||||||| ||| | | || || || |||| |||||| |||| || ||||||||| | | Sbjct 411 GGAGAATATGAGAT-TCGAGTCAATGTACAATTCTCTATTAA-GAAGTTACGCAAGACAA 468 Query 469 TCGGGAGAAATATCTTT-ACGTAAAGCCGAATATACTTTCGAGAAGATGAGGAAGCTAGG 527 || ||||||| | || | | | |||||||||| | |||| ||||||||| ||||||||| Sbjct 469 TCCGGAGAAAAAGCTCTGAAG-AAAGCCGAATCTGTTTTCAAGAAGATGAAGAAGCTAGG 527 Query 528 -TATGCTCTTGAGACCATCACCTTACAACTCCATGGTC-TCACTCTACAGCTCTCTCAGA 585 | ||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||| || Sbjct 528 GT-TGCTCTTGAGACCTTCACCGTACAACTCGATGA-CATCACTCTATAGCTCTCTCGGA 585 Query 586 AACAGAAATAAGGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACCTTGAGCTCGAT 645 |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 586 AACAGAGATAAAGTCGATGAGATTCTTCGAGAGATGAAGGAGAACAACGTTGAGCTCGAT 645 Query 646 AGTCCCACCGTGAACAACGCTTTACGAGTATACGCTGCTGTTTGTGATGTTGCGACAATG 705 | | |||||||||||||||||| ||||||||||||||||| | |||||| ||||||||| Sbjct 646 AATGTCACCGTGAACAACGCTTTGCGAGTATACGCTGCTGTATCTGATGTAGCGACAATG 705 Query 706 GACAAGTTTCTAGCTGATTGGAATGCA-ATTACAACGCTTGAGTGG-CTCACAACACTTG 763 |||||||||||||||||| |||| | | ||||||| |||||| ||| ||||||| |||| Sbjct 706 GACAAGTTTCTAGCTGATAGGAAAG-AGATTACAAGGCTTGA-TGGGCTCACAATGCTTG 763 Query 764 AAATGGCAAAGGCTTATAGA-CTCATAAGGCTATATGGTGAAGCAGGGGAGAGAGATGAT 822 ||||||||||||||| || ||||| || ||||||||||||||||| |||| ||| ||| Sbjct 764 CGATGGCAAAGGCTTAT-GAACTCATGAGCCTATATGGTGAAGCAGGAGAGATAGAAGAT 822 Query 823 GTTTACCGTATATGGGACTTGTACAAGAAC-ACAAAAGAGAAGGACAATGAAGGATTTCG 881 ||| ||||| |||||||| ||||||| | |||| | ||||||| ||||||| |||||| Sbjct 823 GTTCACCGTGTATGGGACAAGTACAAGG-CGACAAGACAGAAGGATAATGAAGAATTTCG 881 Query 882 AGCTTTGATTGGTTCTCTCTTGAAGCTTGATGATATCAACGGAGCAGAGAAGATATACTA 941 | ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 882 AACTTTGATTGGTTCTCTCTTGAAGCTTGGTGATACCAAAGGAGCAGAGAAGATATACTA 941 Query 942 CGATGAGTGGGAGTCCTCTGGTCTTGAGTTCGATCTCCGAATCCC-GACTATGTTGATGT 1000 | |||||||||||| ||| ||||||||||| ||| ||||||||| || ||||||| ||| Sbjct 942 CAATGAGTGGGAGTGCTCCGGTCTTGAGTTTGATAACCGAATCCCCGA-TATGTTGGTGT 1000 Query 1001 CTGGTTATCGCGCAAAGGGAATGGTGAAGAAGGCAGATAAACTATTGTACAAGACTATGA 1060 | |||||||||| |||||||||||||| ||||||||||||||| || |||||||| || Sbjct 1001 CGGGTTATCGCGAAAAGGGAATGGTGATGAAGGCAGATAAACTGGTGAACAAGACTTTGT 1060 Query 1061 AGAATAAAAG-ATTGGTTATATCGATTAATCCATTTGTTG-AGGAATTGG-TGAAAAATA 1117 || | | || ||||| || | | || | || || | || | ||| ||| | ||||| Sbjct 1061 GGA-TCAGAGGATTGGCTACACCAATCACTCTGTT-GCTGGAAGAAATGGAT-AAAAAGG 1117 Query 1118 GAAACCAAGTGAAG-CCGTCGGACTTGAGAGACCTCATCAAGAATCTGCGTGACTCAAAT 1176 | || |||||| | ||| ||| |||||||||||||||||||||||| ||||| |||||| Sbjct 1118 GGAATAAAGTGA-GTCCGCCGGGCTTGAGAGACCTCATCAAGAATCTACGTGATTCAAAT 1176 Query 1177 CAATTATCTAAAGCACTTGAGGCATCAACATGGATGTGTGAAAAAAGGG-GTTTTAATCT 1235 || || || |||||||||||||||||||||||||||||| |||||| || |||| ||||| Sbjct 1177 CAGTTGTCCAAAGCACTTGAGGCATCAACATGGATGTGTCAAAAAAAGGTGTTT-AATCT 1235 Query 1236 -TTTTCCAGAAGATTATGCAATTAGGTTTCATCTGATTGAGAAAGTGTTGGGATTGGAGG 1294 ||||| |||||||||||||| ||| ||||||||| ||||||||||||||| ||||||| Sbjct 1236 CTTTTC-AGAAGATTATGCAACAAGGCTTCATCTGACTGAGAAAGTGTTGGGTTTGGAGG 1294 Query 1295 AAGCAGAGAAGTTTTTCGAAAGCAGCATCCCGAAGAACATGAAGGATTACTCTGTCTACG 1354 |||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 1295 AAGCAGAGAACTTTTTCGAAAGCAGCATCCCGGAGAATATGAAAGATTACTCTGTCTACG 1354 Query 1355 ATACACTCTTAACCTCGT-ACACAAGATCT-GACAAAACTCTA-GTCAAAGCGGAAGGCG 1411 |||||||||||| || || | |||||||| | ||| |||| | || ||||| |||| || Sbjct 1355 ATACACTCTTAAGCT-GTTATGCAAGATCTAG-CAACACTCAAAGT-AAAGCTGAAGCCG 1411 Query 1412 TTTTCGAGAAGATGAGAGAGCTAGGTTTCCTCTCAAAACTTTCCCCATTCAACTCGATAA 1471 |||||||||||||||||||||||||||| | || ||||||||||||||||||||| | | Sbjct 1412 TTTTCGAGAAGATGAGAGAGCTAGGTTTACAATCCAAACTTTCCCCATTCAACTCGTTGA 1471 Query 1472 TATCTCTCTACATTGAGCAAAGGAAACTAAGTAAGGTCAATA-AGCTTCTATGTGATATG 1530 |||||||||||| || |||| ||||||||||| |||||||| | ||||||||||||||| Sbjct 1472 TATCTCTCTACAGTGGGCAAGGGAAACTAAGTGTGGTCAATATA-CTTCTATGTGATATG 1530 Query 1531 AAGCAGAATAATATATATAGAGCCTGA 1557 ||||| ||| | ||||||||||||| Sbjct 1531 AAGCA---TAAGA-ATATAGAGCCTGA 1553 > AT3G11350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:3558495-3560078 FORWARD LENGTH=1080 Length=1080 Score = 178 bits (96), Expect = 2e-43 Identities = 147/169 (87%), Gaps = 13/169 (8%) Strand=Plus/Plus Query 1 ATGAGCATGACGCTTAATCTTCAGCGACACGCAAAGCGAATCCTCGCTTACAGTAACAGG 60 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGAGCATGACGCTTAGTCTTCAGCGACACGCAAAGAGAATCCTCGCTTACAGTAACAGG 60 Query 61 CCTCGACTCTTCTGCTCCTACAGAAACGGAACCCTATCGTCTCCGGGGACGAACCAAACT 120 |||||| ||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 61 CCTCGATTCTTCTGCTCCTACAGAAACGGAACGCTATCG---------ACGAACCAAACT 111 Query 121 CTGC-TGAGTCGAATCGAATCGGCTGCT-GATCAAAAAGCAGCAATCAC 167 |||| || ||||||||||| | ||| | ||||| ||||||| |||||| Sbjct 112 CTGCATG-GTCGAATCGAAGCTGCTT-TAGATCAGAAAGCAGAAATCAC 158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76857034395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5