BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904035

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11530.1 | Symbols:  | Vacuolar protein sorting 55 (VPS55) f...   630    2e-180


> AT3G11530.1 | Symbols:  | Vacuolar protein sorting 55 (VPS55) 
family protein | chr3:3628594-3630483 REVERSE LENGTH=746
Length=746

 Score =  630 bits (341),  Expect = 2e-180
 Identities = 369/382 (97%), Gaps = 3/382 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGATGACCATCGAAGTACTTGCTGGACTTGCTTTCATGTTTTCATCTAGTATCCTC  60
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  160  ATGGCGATGACCATCGAAG-ACTTGCTGGACTTGCTTTCATGTTTTCATCTAGTATCCTC  218

Query  61   CTACAGATCCTGGCATGTGCGATATATGGTAATTGGTGGCCAATGCTATCAGCACTCATG  120
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  219  CTACAGATCCTGGCATGCGCGATATATGGTAACTGGTGGCCAATGCTATCAGCACTCATG  278

Query  121  TATGTAGTGGTGCCTATGCCTTGTATGTTCTTTGGAGGAGGCTCAACTCAATTCCTTACT  180
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  279  TATGTAGTGGTGCCTATGCCTTGTATGTTCTTTGGAGGAGGCTCAACCCAATTCCTTATT  338

Query  181  AGTCGGGACGGTGGAGGGTGGATAGATGCAGCTAAGTTCTTGACCGGAGCATCGACCGTG  240
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  339  AGTCGGGACGGTGGAGGGTGGATAGACGCAGCGAAGTTCTTGACCGGAGCATCGACCGTG  398

Query  241  GGAAGCCTCGCTATCCCAATCATTCT-AAGGCACGCACAGATGATCGAGACAGGTGCAAT  299
            |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  399  GGAAGCCTTGCTATCCCAATCAT-CTTAAGGCACGCACAGATGATCGAGACAGGTGCAAT  457

Query  300  GCTCATAGAATTCACATCGTTCTTCATATTCATTTGCACTGTCATGTGTTTCCACCGGGC  359
            ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  458  GCTCATAGAGTTCACATCATTCTTCATATTCATTTGCACTGTCATGTGTTTTCACCGGGC  517

Query  360  TAGTCTCGATGATGACTGGTAA  381
            ||||||||||||||||||||||
Sbjct  518  TAGTCTCGATGATGACTGGTAA  539



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5