BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904078 Length=1890 Score E Sequences producing significant alignments: (Bits) Value AT3G11920.1 | Symbols: | glutaredoxin-related | chr3:3772311-3... 2726 0.0 > AT3G11920.1 | Symbols: | glutaredoxin-related | chr3:3772311-3774887 FORWARD LENGTH=1893 Length=1893 Score = 2726 bits (1476), Expect = 0.0 Identities = 1750/1879 (93%), Gaps = 31/1879 (2%) Strand=Plus/Plus Query 26 AAAATCCGAGAAATTCTGAGAAAGTAACAAACGGCCAAAGTTGCACTATCTCTTCGGATA 85 ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 32 AAAATCCGAGAAAATCTGAGAAAGTAACAAACGGCAAAAGTTACACTATCTCTTCGGATA 91 Query 86 TTGTTTCTCCTCCATATTCAAATTCAAATCCCATGAGCGATCACGGACATCCCGCCACAC 145 ||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||| Sbjct 92 TTGTTTCACCTCCATATTCAAATTCAAATCCCATCAGTGATCACGTACATCCCGCCACAC 151 Query 146 CCATTCGTGAAGCCGTCTCTCAAAATCCGATGAAGGAAATCTCAATCGATGATTCATATC 205 |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| | |||| Sbjct 152 CCATTCCTGAAGCCGTCTCTCAAAGTCCGATGAAAGAAATCTCAATCGATGATCCTTATC 211 Query 206 TTCCACCACATCCTCAGCTACCGAAACTTGAGCCGCCACGTGGCCGTCGTGTCTCTTTAG 265 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 212 TCCCACCACATCCTCAGCTACCGAAACTTGAACCGCCACGTGGCCGTCGTGTCTCTTTAG 271 Query 266 AAGAATTGTTGCATCC-ACCGGAGAAATTCACCGCCGATCTGATGAAATTCGTACGTCAA 324 ||||||| |||||||| | ||||||||||||| |||| ||||||||||| |||| ||| Sbjct 272 AAGAATTATTGCATCCGA-AAGAGAAATTCACCGGCGATTTGATGAAATTCATACGCCAA 330 Query 325 AGCGGGAACGCGATTTCGAAACGCATCTCGGTTTTGCTAGAGAACGACGACGACTCCGAC 384 |||||||||||||||||||||||||||||||||||||||||| | ||||||| | || Sbjct 331 AGCGGGAACGCGATTTCGAAACGCATCTCGGTTTTGCTAGAG-A--ACGACGA-T--GA- 383 Query 385 TCGAAGAAGACGATCGAT-GATGACGTGACCGAGTTCAAAATCTCTGGAGTCAAAGTTCT 443 | || ||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 384 -C---GACGAC--TCGATCGATGACGTGACCGAGTTCAAAATCTCTGGAGTGAAAGTTCT 437 Query 444 CGTGAAGATGAAAACCGAAGAAGAAATCAGAGGTCGTATAACTTTCTTCTCCAGATCTAA 503 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 438 CGTGAAGATGAAAAACGAAGAAGAAATCAAAGGTCGTATAACTTTCTTCTCCAGATCTAA 497 Query 504 TTGCCGAGATTCAACCGCCGTCAGATTGTTTCTCCGGGAACAAGGCTTCGATTTCTCGGA 563 |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| Sbjct 498 CTGCCGAGATTCAACCGCCGTCAGATTGTTTCTCCGGGAACGAGGATTTGATTTCTCGGA 557 Query 564 GATCAACATCGATGTGTATACGGCAAGAGAGAAAGAGCTGATCGAAAGAACAGGGAGTTC 623 |||||||||||| |||||| || ||||||||||||||||| | ||||||||||||||||| Sbjct 558 GATCAACATCGACGTGTATTCGTCAAGAGAGAAAGAGCTGGTTGAAAGAACAGGGAGTTC 617 Query 624 TCAAGTCCCTCAGATTTTCTTCAACGAGAAACACTTCGGAGGATTAATGGCGCTGAATTC 683 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 618 TCAAGTTCCTCAGATTTTCTTCAACGAGAAACACTTCGGAGGATTAATGGCGTTGAATTC 677 Query 684 TCTGAGAAACAGTGGTGAATTTGATCTGAGGGTTAAGGAGTTTTTGAAGGAGAAGTGTTG 743 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 678 TCTGAGAAACAGTGGTGAATTTGATCGGAGGGTTAAGGAGTTTTTGAAGGAGAAGTGTTG 737 Query 744 CGGCGATGCACCGGCGCCGGTGATGTATGGATTCGACGAAGAGAG---TAATAAGGA--- 797 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 738 CGGCGATGCACCGTTGCCGGTGATGTATGGATTCGACGAAGAGAGTAATAATAAGGATGT 797 Query 798 TGTTGTTGTTGTTGATGAGATTTTGAGATTCGTTAGGGTTTTGAGACAGAAGCTACCGAT 857 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 798 TGTTGTTGTTGTTGATGAGATGATGAGATTCGTTAGGGTTTTGAGACAGAAGCTACCGAT 857 Query 858 TAAGGATCGTTTGTTGAAGATGAAGATCGTTAAGAACTGTTTCTCCGGCGCCGAGATGAT 917 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 858 TAAGGATCGTTTGATGAAGATGAAGATTGTTAAGAACTGTTTCTCCGGCGCCGAGATGGT 917 Query 918 CGAGATTCTCATTGATTACTTGGATTGCGGGAGGAACAAGGCTGTTGAAGTTGGCATGAG 977 |||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||| Sbjct 918 CGAGATTCTCATTGATTACTTGGATTGCGGGAGGAAGAAGGCTGTTGAAATAGGCAAGAG 977 Query 978 GCTAGCCAAAAAACACTTTATCCACCATGTCTTTGGAGAGAACGAGTTTGAAGATGGAAA 1037 | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 GTTAGCCGAGAAACACTTTATCCACCATGTCTTTGGAGAGAACGAGTTTGAAGATGGAAA 1037 Query 1038 TCATTACTACCGTTTCCTAGAGCACGAACCGTTTATTTCAAAATGTTACAATTTCAGAGG 1097 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct 1038 TCATTACTACCGTTTCCTAGAGCACGAGCCGTTTGTTTCAAAATGTTACAATTTTAGAGG 1097 Query 1098 TTCTACCAACGACATGGAGCCCCAAAGTGCAGGCATCGTTGGGCAGAAGCTTTTCAAAAT 1157 |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 1098 TTCTACCAACGACATGGAGCCCCAAAGTGCAGCCATTGTTGGGCAGAAGCTATTCAAAAT 1157 Query 1158 CATGACTGCTATTCTTGAGTCTTATTCTTCCAATGACCGTTCTTGTGTTGATTACCTGAG 1217 |||||| |||||||| |||||||||||||||||||||| || ||||||||||| |||| Sbjct 1158 CATGACAGCTATTCTCGAGTCTTATTCTTCCAATGACCACACTAGTGTTGATTACATGAG 1217 Query 1218 AATCAGCCAGAGCGAAGAATTCCGAAGGTACTTGAATTTGGCTCAAGACCTT-CACCGTT 1276 |||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1218 AATCAGCCAGAGTGAAGAATTCCGAAGGTACTTGAATTTGGCTCAAGA-CTTCCACCGTT 1276 Query 1277 TGAATATTGTGGAACTCTCAACGGAAGAGAAGTTAGCATTTTTCTTGAACTTGTACAACG 1336 ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1277 TGAATCTTGTGGAACTCTCAACGGAAGAGAAGTTAGCATTTTTTTTGAATTTGTACAACG 1336 Query 1337 CAATGGTGATTCATGCTTTGATCAGAATCGGACGTCCTGAGGGAG-TGATCGCAAGAAGG 1395 ||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||| Sbjct 1337 CAATGGTGATTCATGCTTTGATCAGTATCGGACGTCCCGAGGG-GTTGATCGCAAGAAGG 1395 Query 1396 TCATTTTTTACAGATTTTCAGTACGTCGTAGGAGGCTACTCTTATTCACTTAGCTCCATC 1455 ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1396 TCATTCTTTACGGATTTTCAGTATGTTGTAGGAGGCTACTCTTATTCACTTAGCTCCATC 1455 Query 1456 CGAAATGACATCCTTCGACGCGGTCGCAGACCCTCTTATCCCTTTATTA---TTCCGTTT 1512 ||||||||||||||||| |||||||| | |||||||||||| ||||| | || ||| Sbjct 1456 CGAAATGACATCCTTCGTCGCGGTCGAAAACCCTCTTATCCATTTATCAGGCCACCTTTT 1515 Query 1513 ATTAACGACAATG-CACGACATAAGCTTGGACTTCAAAAACTGAATCCATTAGTACATTT 1571 | ||||| ||| | |||| ||| ||||||| |||| |||||||||||||||||||||||| Sbjct 1516 AATAACGGCAA-GACACGGCATGAGCTTGGTCTTCTAAAACTGAATCCATTAGTACATTT 1574 Query 1572 TGGCTTATGCGATGGGACCAAATCAAGTCCAGTGGTGAGGTTTTTCACACCGCAAGGAGT 1631 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1575 TGGCTTATGCGATGGGACCAAATCAAGTCCTGTGGTGAGGTTTTTCACACCGCAAGGAGT 1634 Query 1632 TGAAGCTGAACTCAAACGAGCAGCTAGAGAGTTTTTTCAAAATGGTGGAATTGAGGTTGT 1691 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1635 CGAAGCTGAGCTCAAACGAGCAGCTAGAGAGTTTTTTCAAAATGGTGGAATTGAGGTTGT 1694 Query 1692 CTTGGACAAGAGGACCATACATCTATCAAAAATCATCAAGTGGTACAAAGAGGATTTCAG 1751 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1695 CTTGGACAAGAGGACCATACATCTATCAAGAATCATCAAGTGGTACAAAGAGGATTTCAG 1754 Query 1752 TGAAGAGAAGAAAATGTTGAAGTGGATAATGAGTTATATAGATGCAAACGATGCAGGTCT 1811 ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| Sbjct 1755 TGAAGAGAAGAAAATGTTGAAGTGGATAATGGGTTATATAGATTCAAATGATGCAGGTCT 1814 Query 1812 TTTAACCCATCTTCTTGGTGATGGAGGAGGTTCTTTTAACATCGTTTACCAAGATTATGA 1871 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1815 TTTAACCCATCTGCTTGGTGATGGAGGTGGTTCTTTTAACATCGTTTACCAAGATTATGA 1874 Query 1872 TTGGTCTATCAACAATTGA 1890 |||||||| |||||||||| Sbjct 1875 TTGGTCTACCAACAATTGA 1893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93573815880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5