BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904089
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12000.1 | Symbols: | S-locus related protein SLR1, putativ... 1914 0.0
AT1G47440.1 | Symbols: | pseudogene, putative S-locus-specific... 1055 0.0
AT1G47460.1 | Symbols: | pseudogene, putative S-locus-specific... 532 2e-150
> AT3G12000.1 | Symbols: | S-locus related protein SLR1, putative
(S1) | chr3:3818262-3819620 REVERSE LENGTH=1359
Length=1359
Score = 1914 bits (1036), Expect = 0.0
Identities = 1219/1308 (93%), Gaps = 10/1308 (1%)
Strand=Plus/Plus
Query 26 ATGAGAGGCGTAACACCAAACTATCACCATTCTTACACTTTAATTTCTTCTTCTTCTTCG 85
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1 ATGAGAGGCGTAACACCAAACTATTACCATTCTTACACTTT--CTTCTTCTTCTTCTTCG 58
Query 86 TTGTCTTATTAGCTCTGGTTCGTCATGTGTTCTCGATCAATACTTTGTCATCTACAGAAA 145
||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||||
Sbjct 59 TTGTCTTATTAGCTCTGTTTCTTCATGTTTTCTCGATAAACACTTTGTCATCTACAGAAA 118
Query 146 CTCTGACAATCTCAAGCAACCGAACCATTGTATCTCCCGGTAACGTCTTCGAGCTTGGTT 205
|||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 119 CTCTAACAATCTCAAGCAACCGAACCATTGTGTCTCCCGGTAACATCTTCGAGCTAGGTT 178
Query 206 TCTTCAAAACCACAACAAGCTCTCGAAATGGTGATCGTTGGTATCTTGGGATTTGGTACA 265
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 TCTTCAAAACTACAACAAGCTCTCGAAATGGTGATCATTGGTATCTTGGGATTTGGTACA 238
Query 266 AGTCAATCTCTGAGAGAACTTATGTATGGGTTGCTAACAGAGACAATCCTCTTTCCAAAT 325
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 239 AGTCAATCTCTGAGAGAACTTATGTATGGGTTGCCAACAGAGATAACCCTCTTTCCAAGT 298
Query 326 CCATCGGAACATTAAAAATCTCTTACGCTAACATTGTCCTTCTTGATCATTATGATACTC 385
| |||||||||||||| ||||||||||||||| | |||||||||||||||| || |||||
Sbjct 299 CTATCGGAACATTAAAGATCTCTTACGCTAACCTCGTCCTTCTTGATCATTCTGGTACTC 358
Query 386 CTGTTTGGTCAACGAATCTGACGAGAATGGTGAAATCTCCAGTGGTGGCAGAGCTTCTCG 445
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 359 TTGTTTGGTCAACGAATCTAACGAGAACGGTGAAATCTCCAGTGGTGGCAGAGCTGCTCG 418
Query 446 ATAACGGCAACTTCGTGCTTAGAGACTTCAAAAGCAACAATCAAAATCGATTCTTGTGGC 505
||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||
Sbjct 419 ATAACGGCAACTTCGTGCTTAGAGACTCCAAAGGCAACTATCAAAACCGATTCTTGTGGC 478
Query 506 AAAGCTTTGATTATCCGGTTGATACTTTGCTACCGGAGATGAAAATTGGTCGGAATCTCA 565
||||||||||||||||||| || || || || ||||||||||||||||||||| ||||||
Sbjct 479 AAAGCTTTGATTATCCGGTGGACACATTACTCCCGGAGATGAAAATTGGTCGGGATCTCA 538
Query 566 AAACAGGACACGAGAGTTTCCTCAGTTCTTGGAGAAGCCCTTATGATCCCTCAAGCGGAG 625
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAACAGGACACGAGACTTTCCTCAGTTCTTGGAGAAGCCCTTATGATCCCTCAAGCGGAG 598
Query 626 GCTTCTCTTTCAAACTCGAAACTCAAGGGCTACCTGAGTTATATCTTTACAAGAAAGAGT 685
|||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 599 ACTTCTCGTTCAAACTCGGAACTCAAGGGCTACCTGAGTTTTATCTTTTCAAGAAAGAGT 658
Query 686 TTCTATTGTACCGATCCGGTCCGTGGAATGGAGTCGGGTTTAGTGGCATACCGACGATGC 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTCTATTGTACCGATCCGGTCCGTGGAATGGAGTCGGGTTTAGTGGCATACCGACGATGC 718
Query 746 AAAACTGGAGCTACTTTGACGTTGTTAACAACTTCATAGAGAACAGAGAGGAAGTTGCTT 805
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 AAAACTGGAGCTACTTTGACGTTGTTAACAACTTCATAGAGAACAGAGGGGAAGTTGCTT 778
Query 806 ACAGTTTCAACGTCACCGACCATAGCATGCACTATTTGAGATTTACACTGACTTCCGAAG 865
| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 779 ATAGTTTCAAAGTCACCGACCATAGCATGCACTACGTGAGATTTACACTGACTACCGAAA 838
Query 866 GATTATTACAGATATTCAGATGGGTTACGATATCATCGGAATGGAACTTGTTTGGGGTTT 925
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 839 GATTATTACAGATATCCAGATGGGATACGACATCATCGGAATGGAACTTGTTTGGCGTTT 898
Query 926 TACCGACCGAGAATTGTGATTTGTACCAAATCTGTGGTCGTGACAGTTATTGTGACATGA 985
||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 899 TACCGACCGAGAAATGCGATTTGTACCAAATATGTGGTCGTGATAGTTATTGTGACACGA 958
Query 986 AAACGTCACCGACGTGTAATTGTATCAAAGGCTTTGTTCCAAAGAATGTGACGGCTTGGG 1045
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAACATCACCGACGTGTAACTGTATCAAAGGCTTTGTTCCAAAGAATGTGACGGCTTGGG 1018
Query 1046 CTTTGGGAGATACGTTCCATGGATGTGTGAGGAAGTCACGGTTGAACTGCCACGGAGATG 1105
||||||||||||| || | |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1019 CTTTGGGAGATACATTTGAGGGATGTGTGAGGAAGTCACGACTGAACTGCCACAGAGATG 1078
Query 1106 --tttttt-ttCTGATGAAGAGGATGAAGCTGCC-GGATACAAGTACAACAGTTGTGGAC 1161
|||||| || |||||||||||||||||||||| || |||||| ||| || ||||||||
Sbjct 1079 GGTTTTTTCTTTTGATGAAGAGGATGAAGCTGCCTGG-TACAAGCACAGCAATTGTGGAC 1137
Query 1162 AAGAGAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGATTGTAACTGTACCGGG 1221
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1138 AAGACAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGATTGTAATTGTACCGGG 1197
Query 1222 TTTGCGAATAAGGATATCCGAAATGGTGGGTCGGGTTGTGTTATTTGGACCAGAG-AGCT 1280
||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 1198 TTTGCGAATAAGGATATCCAAAATGGTGGGTCGGGTTGTGTGATTTGGACCGGAGGAGCT 1257
Query 1281 CA-GAGATATGAGGAATTACGTCGCCGGAGGTCAAGATCTTTATGTCA 1327
|| | ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1258 CATG-GATATGAGGAATTACGTCGTCGGAGGTCAAGATCTATATGTCA 1304
> AT1G47440.1 | Symbols: | pseudogene, putative S-locus-specific
glyco protein SLR1 precursor, similar to S-locus-specific
glycoprotein SLR1 precursor GB:S20489 GI:99660 from (Arabidopsis
thaliana); blastp match of 67% identity and 1.6e-109 P-value
to GP|21321208|dbj|BAB97355.1||AB075407 S-locus-related
I {Brassica amplexicaulis} | chr1:17400933-17402268 FORWARD
LENGTH=1336
Length=1336
Score = 1055 bits (571), Expect = 0.0
Identities = 778/874 (89%), Gaps = 30/874 (3%)
Strand=Plus/Plus
Query 121 ATCAATACTTTGTCATCTACAGAAACTCTGACAATCTCAAGCAACCGAACCATTGTATCT 180
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 223 ATCAATACTTTGTCATGTACAGAAACTCTGACAATCTCAAGCAACCGAACTATTGTGTCT 282
Query 181 CCCGGTAACGTCTTCGAGCTTGGTTTCTTCAAAACCACAACAAGCTCTCGAAATGG-TGA 239
||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| | |
Sbjct 283 CCCGGTAACGTCTTCTAGCTAGGTTTCTTCAAAACCACAGCAAGCTCTCGAAATGGAT-A 341
Query 240 TCGTTGGTATCTTGGGATTTGGTACAAGTCAATCTCTGAGAGAACTTATGTATGGGTTGC 299
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 342 TGGTTGGTATCTTGGGATTTGGTACAAGTCAATCTCTGAGAGAACTTATGGATGGGTTGC 401
Query 300 TAACAGAGACAATCCTCTTTCCAAATCCATCGGAACATTAAAAATCTCTTACGCTAACAT 359
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 402 CAACAGAGACAATCCTCTTTCCAAATCCATTGGAACATTAAAGATCTCTTACGCTAAGA- 460
Query 360 TGTCCTTCTTGATCATTATGATACTCCTGTTTGGTCAACGAATCTGACGAGAATGGTGAA 419
|| ||| || | ||||||||||||||||| |||||||||||||| ||| ||
Sbjct 461 --TCATTC----TC-----G-TACTCCTGTTTGGTCAAAGAATCTGACGAGAACGGTAAA 508
Query 420 ATCTCCAGTGGTGGCAGAGCTTCTCGATAACGGCAACTTCGTGCTTAGAGACTTCAAAAG 479
||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct 509 ATCTCCAGTGGTGGCAGAGCTGCTCGATAACGGCAACTTCGTGCTTCGAGACTCCAAAAT 568
Query 480 CAACAATCAAAATCGATTCTTGTGGCAAAGCTTTGATTATCCGGTTGATACTTTGCTACC 539
|||| ||||||| |||||||||||||||||||||||||||||||| || || || || ||
Sbjct 569 CAACTATCAAAACCGATTCTTGTGGCAAAGCTTTGATTATCCGGTGGACACATTACTCCC 628
Query 540 GGAGATGAAAATTGGTCGGAATCTCAAAACAGGACACGAGAGTTTCCTCAGTTCTTGGAG 599
|||||||| ||||||||| |||||||||||||| |||||| ||||||||||| ||||||
Sbjct 629 AGAGATGAAGATTGGTCGGGATCTCAAAACAGGATACGAGACTTTCCTCAGTTTTTGGAG 688
Query 600 AAGCCCTTATGATCCCTCAAGCGGAGGCTTCTCTTTCAAACTCGAAACTCAAGGGCTACC 659
| | ||||| ||||||||||||||| |||||||||| ||||||| ||||||
Sbjct 689 -A---C------TCCCTTAAGCGGAGGCTTCTCGTTCAAACTCGGAACTCAA-GGCTACA 737
Query 660 TGAGTTATATCTTTACAAGAAAGAGTTTCTATTGTACCGATCCGGTCCGTGGAATGGAGT 719
|||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 738 TGAGTTTTATCTTTACAAGAAAGAGTTTCTATTGTACCAATCCGGTCCATGGAATGGAGT 797
Query 720 CGGGTTTAGTGGCATACCGACGATGCAAAACTGGAGCTACTTTGACGTTGTTAACAACTT 779
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 798 TGGGTTTAGTGGCATACCGACGATGCAAAACAGGAGCTACTCTGACGTTGTTAACAACTT 857
Query 780 CATAGAGAACAGAGAGGAAGTTGCTTACAGTTTCAACGTCACCGACCATAGCATGCACTA 839
|||||| || ||||||||||||||||||| |||||| || ||||||||||||| ||||||
Sbjct 858 CATAGACAATAGAGAGGAAGTTGCTTACAATTTCAAAGTTACCGACCATAGCACGCACTA 917
Query 840 TTTGAGATTTACACTGACTTCCGAAGGATTAT-TAC-AGATAT-TC-AGATGGGTTACGA 895
||||||| ||||||||| |||||||||||| || ||| || || ||||||| ||| |
Sbjct 918 CGTGAGATTAACACTGACTCCCGAAGGATTATATATTAGAGATATCCAGATGGGATACAA 977
Query 896 TATCATCGGAATGGAACTTGTTTGGGGTTTTACCGACCGAGAATTGTGATTTGTACCAAA 955
|||||||||||||||||||||| | ||||||||||||| ||| || |||||||||||||
Sbjct 978 CATCATCGGAATGGAACTTGTTTTGCGTTTTACCGACCGCGAAATGCGATTTGTACCAAA 1037
Query 956 TCTGTGGTCGTGACAGTTATTGTGACATGAAAAC 989
| |||||||||||||||||||| ||||||| |||
Sbjct 1038 TATGTGGTCGTGACAGTTATTGCGACATGACAAC 1071
Score = 302 bits (163), Expect = 7e-81
Identities = 217/242 (90%), Gaps = 7/242 (3%)
Strand=Plus/Plus
Query 1090 AACTGCCACGGAGAT---GttttttttCTGATGAAGAGGATGAAGCTGCCGGATACAAGT 1146
|||| |||||||||| |||||| |||||||||||| ||||| ||||||||| |||||
Sbjct 1069 AACTACCACGGAGATGGGGTTTTTATTCTGATGAAGATGATGAGGCTGCCGGAGACAAGC 1128
Query 1147 ACAACAGTTGTGGACAAGAGAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGAT 1206
|||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ACAACAATTGTGGATAAGACAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGAT 1188
Query 1207 TGTAACTGTACCGGGTTTGCGAATAAGGATATCCGAAATGGTGGGTCGGGTTGTGTTATT 1266
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1189 TGTAACTCTACCGGGTTTGCGAATAAGGATATCCGAAATGGTGGGTCGG-TTGTGTGATT 1247
Query 1267 TGGACCAGAGAGCTCA-GAGATATGAGGAATTACGTCGCCGGAGGTCAAGATCTTTATGT 1325
||||| ||||||||| | |||||||| ||||| |||| |||||||| |||| | |||||
Sbjct 1248 TGGACT-GAGAGCTCATG-GATATGAGAAATTATGTCGACGGAGGTCCAGATATATATGT 1305
Query 1326 CA 1327
||
Sbjct 1306 CA 1307
> AT1G47460.1 | Symbols: | pseudogene, putative S-locus-specific
glyco protein SLR1 precursor, similar to S-locus-specific
glycoprotein SLR1 precursor GB:S20489 GI:99660 from (Arabidopsis
thaliana); blastp match of 55% identity and 1.4e-28 P-value
to GP|21321240|dbj|BAB97371.1||AB075423 S-locus-related
I {Lunaria annua} | chr1:17403894-17404298 FORWARD LENGTH=405
Length=405
Score = 532 bits (288), Expect = 2e-150
Identities = 366/403 (91%), Gaps = 8/403 (2%)
Strand=Plus/Plus
Query 26 ATGAGAGGCGTAACACCAAACTATCACCATTCTTACACTTTAATTTCTTCTTCTTCTTCG 85
|||||||||||||||||||||||| ||||||| ||||| | ||||| ||||||||||
Sbjct 1 ATGAGAGGCGTAACACCAAACTATTACCATTCGTACAC----A-TTCTTTTTCTTCTTCG 55
Query 86 TTGTCTTATTAGCTCTGGTTCGTCATGTGTTCTCGATCAATACTTTGTCATCTACAGAAA 145
|||||||||||||||| || | |||||||||||||||||||||||||||||||| |||
Sbjct 56 TTGTCTTATTAGCTCT-ATTTTTTATGTGTTCTCGATCAATACTTTGTCATCTACAAAAA 114
Query 146 CTCTGACAATCTCAAGCAACCGAACCATTGTATCTCCCGGTAACGTCTTCGAGCTTGGTT 205
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 115 CTCTAACAATCTCAAGCAACCGAACCATTGTGTCTCACGGTAACGTCTTCGAGCTAGGTT 174
Query 206 TCTTCAAAACCACAACAAGCTCTCGAAATGGTGATCGTTGGTATCTTGGGATTTGGTACA 265
|||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 175 TCTTCAAAACTACAGCAAGCTCTCTAAATGGTGATCGTTGGTATCATGGGATTTGCTACA 234
Query 266 AGTCAATCTCTGAGAGAACTTATGTATGGGTTGCTAACAGAGACAATCCTCTTTCCAAAT 325
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 235 AGTCAATCTCTGAGAGAACTTATGTATGGGTTGCCAATAGAGACAATCCTCTTTCCAAAT 294
Query 326 CCATCGGAACATTAAAAATCTCTTACGCTAACATTGTCCTTCTTGATCATTATGATACTC 385
|||| ||||||||||| |||||||||||| || ||||||||||||||||||||| |||||
Sbjct 295 CCATTGGAACATTAAAGATCTCTTACGCTGACCTTGTCCTTCTTGATCATTATGGTACTC 354
Query 386 CT-GTTTGGTCAACGAATCTGACGAGAATGGTGAAATCTCCAG 427
| ||| |||||| |||||||||||| | |||||||||||||
Sbjct 355 -TAGTTCGGTCAAAGAATCTGACGAGGACAGTGAAATCTCCAG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5