BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904095
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12060.1 | Symbols: TBL1 | Plant protein of unknown function... 2645 0.0
AT5G06700.1 | Symbols: TBR | Plant protein of unknown function ... 941 0.0
> AT3G12060.1 | Symbols: TBL1 | Plant protein of unknown function
(DUF828) | chr3:3843142-3845150 FORWARD LENGTH=1671
Length=1671
Score = 2645 bits (1432), Expect = 0.0
Identities = 1603/1684 (95%), Gaps = 17/1684 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCGGACACCGTTAAGCATATGCCTATTCACGGCGTCTCCGCCTTCTCCTCCGTC 60
||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTGGACTCCGTTAAGCATTTGCCTATTCACGGCGTCTCCGCCTTCTCCTCCGTC 60
Query 61 ACCGTCGAAATCAAAAACTTTTTCTCCGCCGTGAAACCAAGAAAAACCTCAACTTTCGTC 120
|||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 61 ACCGTCGAAATCAAAAGCTTTTTCTCCACCGTGAAACCAAGAAAAACTTCAACTTTCGTC 120
Query 121 TACGCTTTCGTCGTAACTTTCGTTGCCTTGACTGTTTTCTTAGCCTTTAGTCCTTCTCCC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGCTTTCGTAGTAACTTTCGTTGCCTTGACTGTTTTCTTAGCCTTTAGTCCTTCTCCC 180
Query 181 ATCACAGTCGCAATCGCTCCTTCCATTTCTTCCTATATTCTCCCTAATATCACTGTCTCC 240
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 ATCACAGTCGCACTCGCTCCTTCCATTTCTTCCTATGTTCTCCCTAATATCACTGTCTCG 240
Query 241 AATTCA-CCTAACTCTCCAGCGTCGACCCTCGATTCCAATTTCACCACATTGCCG-ACAC 298
|||||| || |||||| || |||||| |||||||| ||||||||||||||| || ||||
Sbjct 241 AATTCATCC-AACTCTTCACCGTCGAGTCTCGATTCTAATTTCACCACATTG-CGTACAC 298
Query 299 CGGCGCCGGAAAATCTCACGGCAGTTACTAAAAACGTAACCTTTGAGTCCCCCATCGCAA 358
||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct 299 CGGCGCCGGAAAATCTCACTGCAGTTACTAAAAACTTAACCTTTGAGTCCCCCGTCGCAA 358
Query 359 ATGGGACAACAGACCCGACTGCTACAGA-CAACACTTTTCAGTTCAAGACCGATCATGCA 417
|||||||||| ||| | | ||||| | | || |||| |||||||| |||||| |||||||
Sbjct 359 ATGGGACAACGGACACAAATGCTA-AAACCATCACTATTCAGTTCCAGACCGGTCATGCA 417
Query 418 AAGGAAAACATATCGTGTCCTGACAACAAGACTGATGTTACTGCTCGAGATTTGGACAAA 477
||||||||||||||||||||||||||| | | | ||||||||||||||||||| |
Sbjct 418 AAGGAAAACATATCGTGTCCTGACAAC-A-A---A----ACTGCTCGAGATTTGGACACA 468
Query 478 CATGGAGCAAGGAAAGCACCTCTGTCGGAGGTTCTAGCCGTCAATTCCTCTGCTTCTCAG 537
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
Sbjct 469 CATGGAGCAAGGAAAGCACCTCTGTCGGAAGTTCTAGCTGTCAATTCGACTGCTTCTCCG 528
Query 538 ATGAGAAAACAGAGAAGGAAGTCGTCGCTGAGAAAAGTGATCGAGTCTCTGAAGAGTTGC 597
| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 529 AAGCGAAAACAGAGAAGGAAGTCGTCGCTGAGAAAGGTGATCGAGTCTCTGAAGAGTTGT 588
Query 598 GAGTTTTTCGAGGGAGATTGGGTCAAAGACGATTCGTATCCGCTCTACAAACCCGGGTCG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 589 GAGTTTTTCGAGGGAGATTGGGTCAAAGACGATTCGTATCCGCTCTACAAACCCGGTTCG 648
Query 658 TGTAATCTGATCGATGAACAGTTTAATTGTATCTCTAACGGAAGACCTGACGTGGATTTC 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 649 TGTAATCTGATCGATGAACAGTTTAATTGTATCTCAAACGGAAGACCTGACGTGGATTTC 708
Query 718 CAGAAATTGAAATGGAAACCAAAGAAATGCTCTTTACCAAGGTTAAATGGAGGTAAATTG 777
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 709 CAGAAATTGAAATGGAAACCAAAGCAATGTTCTTTACCAAGGTTAAATGGAGGTAAATTG 768
Query 778 CTGGAGATGATTAGAGGAAAAAGGCTAGTGTTTGTTGGAGATTCGCTGAATAGAAACATG 837
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CTTGAGATGATTAGAGGAAGAAGGCTAGTGTTTGTTGGAGATTCGCTGAATAGAAACATG 828
Query 838 TGGGAGTCTTTGGTTTGCATTCTTAAAGGATCAGTGAAAGATGAGAGTCAAGTCTTTGAG 897
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 TGGGAGTCTTTGGTTTGCATTCTTAAAGGATCAGTGAAAGACGAGAGTCAAGTCTTTGAG 888
Query 898 GCTCATGGAAGGCATCAATTCCGTTGGGAGGCTGAGTACTCCTTT-GTCTTCAAAGATTA 956
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 889 GCTCATGGAAGGCATCAATTCCGTTGGGAGGCTGAGTACT-CTTTCGTCTTTAAAGATTA 947
Query 957 TAATTGCACTGTGGAGTTCTTTGCATTGCCTTTCTTGGTTCAAGAATGGGAAGTTACAGA 1016
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 948 TAATTGCACTGTGGAGTTCTTTGCATCGCCTTTCTTGGTTCAAGAATGGGAAGTTACAGA 1007
Query 1017 GAATAACGGGACGAAGAAGGAGACTTTGCGGTTAGATTTGGTCGGGAAGTCATCGGAGCA 1076
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GAAGAACGGGACGAAGAAGGAGACTTTGCGGTTAGATTTGGTCGGGAAGTCATCGGAGCA 1067
Query 1077 GTACAAAGGAGCGGATATTCTTGTATTCAATACCGGACATTGGTGGACTCATGAGAAAAC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GTACAAAGGAGCGGATATTCTTGTATTCAATACCGGACATTGGTGGACTCATGAGAAAAC 1127
Query 1137 TTCCAAAGGGGAGGATTATTATCAAGAAGGGAGCAATGTTCACCCGAAACTCGATGTGGA 1196
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1128 TTCCAAAGGGGAGGATTATTATCAAGAAGGGAGCACTGTTCACCCGAAACTCGATGTGGA 1187
Query 1197 TGAAGCTTTTCGAAAAGCATTGACGACTTGGGGTCGATGGGTTGATAAGAATGTGAATCC 1256
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1188 TGAAGCTTTCCGAAAAGCATTGACAACTTGGGGTCGATGGGTTGATAAGAATGTGAATCC 1247
Query 1257 AAAGAAATCCCTTGtttttttCCGTGGTTATTCCCCGTCACATTTCAGCGGCGGGCAATG 1316
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AAAGAAGTCCCTTGTTTTCTTCCGTGGTTATTCCCCGTCACATTTCAGCGGCGGGCAATG 1307
Query 1317 GAATGCGGGAGGAGCATGCGATGATGAAACAGAACCGATCAAGAACGAGACTTACCTAAC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GAATGCGGGAGGAGCATGCGATGATGAAACAGAACCGATCAAGAACGAGACTTACCTAAC 1367
Query 1377 TCCTTACATGTTGAAGATGGAGATACTTGAAAGAGTTCTCAGTGGAATGAAAACGCCTGT 1436
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1368 TCCTTACATGTTGAAGATGGAGATACTTGAAAGAGTTCTCAGGGGAATGAAAACACCAGT 1427
Query 1437 CACGTATCTCAACATCACGAGGTTAACTGATTACAGGAAGGACGCTCATCCGTCGATATA 1496
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1428 CACGTATCTCAACATCACGAGGTTAACTGATTACAGGAAGGACGCTCACCCATCGATATA 1487
Query 1497 CCGGAAACAAAAACTATCCGCAGAAGAAAGTAAATCACCATTGTTGTACCAAGACTGTAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CCGGAAACAAAAACTATCCGCAGAAGAAAGTAAATCACCATTGTTGTACCAAGACTGTAG 1547
Query 1557 CCACTGGTGCCTCCCTGGGGTGCCTGATTCTTGGAACGAAATTCTCTATGCCGAGATACT 1616
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1548 CCACTGGTGTCTCCCTGGGGTGCCTGATTCTTGGAACGAAATTTTCTATGCCGAGTTACT 1607
Query 1617 CGTAAAACTTGACCAGCTTGGTGGCAGAAGACGGCGGAAACCCCTAAAAGATCATAGGAG 1676
||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1608 TGTAAAGCTTGACCAGCTTGGTGGCAAAAGACGGCGGAAAGCCCTAAAAGATCATAGGAG 1667
Query 1677 TTGA 1680
||||
Sbjct 1668 TTGA 1671
> AT5G06700.1 | Symbols: TBR | Plant protein of unknown function
(DUF828) | chr5:2063487-2066039 FORWARD LENGTH=2207
Length=2207
Score = 941 bits (509), Expect = 0.0
Identities = 895/1078 (83%), Gaps = 39/1078 (4%)
Strand=Plus/Plus
Query 567 GAGAAAAGTGA-TCGAGTCTCTGAAGAGTTGCGAGTTTTTCGAGGGAGATTGGGTCAAAG 625
|||||| | || | || ||| |||||| ||| ||||| ||||| || || ||| ||||||
Sbjct 887 GAGAAATG-GAGT-GAATCTTTGAAGAATTGTGAGTTCTTCGACGGTGAATGGATCAAAG 944
Query 626 ACGATTCGTATCCGCTCTACAAACCCGGGTCGTGTAATCTGATCGATGAACAGTTTAATT 685
| |||||||||||||| || ||||| || ||||||||||| |||||||||||||| ||||
Sbjct 945 ATGATTCGTATCCGCTTTATAAACCTGGTTCGTGTAATCTTATCGATGAACAGTTCAATT 1004
Query 686 GTATCT-CTAACGGAAGACCTGACGTGGATTTCCAGAAATTGAAATGGAAACCAAAGAAA 744
|||| | | ||||||||||| ||| ||||||||||||||||| |||||||| ||||||
Sbjct 1005 GTAT-TACCAACGGAAGACCAGACAAAGATTTCCAGAAATTGAAGTGGAAACCTAAGAAA 1063
Query 745 TGCT-CTTTACCAAGGTTAAATGGAGGTAAATTGCTGGAGATGATTAGAGGAAAAAGGCT 803
|| | |||||||||||||||||||| || |||| |||||||| ||||||||| ||| ||
Sbjct 1064 TG-TAGTTTACCAAGGTTAAATGGAGCTATATTGTTGGAGATGCTTAGAGGAAGAAGACT 1122
Query 804 AGTGTTTGTTGGAGATTCGCTGAATAGAAACATGTGGGAGTCTTTGGTTTGCATTCTTAA 863
|| ||||| || ||||| || ||||| ||||||||||| ||| ||||||| ||||| ||
Sbjct 1123 TGTCTTTGTGGGTGATTCACTAAATAGGAACATGTGGGAATCTCTGGTTTGTATTCTCAA 1182
Query 864 AGGATCAGTGAAAGATGAGAGTCAAGTCTTTGAGGCTCA-TGGAAGGCATCAATTCCGTT 922
|||||||||||||||||||| | |||||| ||||||| | ||||| ||||| ||||||
Sbjct 1183 AGGATCAGTGAAAGATGAGACTAAAGTCTATGAGGCT-AGAGGAAGACATCATTTCCGTG 1241
Query 923 GGGAGGCTGAGTACTCCTTTGTCTTCAAAGATTATAATTGCACTGTGGAGTTCTTTGCAT 982
|||||||||||||||| || |||||| |||||||||| ||||| ||||||||||||| |
Sbjct 1242 GGGAGGCTGAGTACTCATTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTTG-TT 1300
Query 983 T-GCCTTTCTTGGTTCAAGAATGGGAAGTTACAGAGAATAACGGGACGAAGAAGGAGACT 1041
| || |||||||||||||| |||||| || ||| || || || || ||||||||||||
Sbjct 1301 TCACCCTTCTTGGTTCAAGAGTGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAGACT 1360
Query 1042 TTGCGGTTAGATTTGGTCGGGAAGTCATCGGAGCAGTACAAAGGAGCGGATATTCTTGTA 1101
|| |||| |||||||| |||||||| || ||||||||||||||||| ||| || ||||
Sbjct 1361 TTAAGGTTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAAGGAGCTGATGTTATTGTC 1420
Query 1102 TTCAATACCGGACATTGGTGGACTCATGAGAAAACTTCCAAAGGGGAGGATTATTATCAA 1161
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1421 TTTAATACCGGACATTGGTGGACTCATGAGAAAACATCCAAAGGGGAGGATTATTATCAA 1480
Query 1162 GAAGGGAGCAATGTTCACCC-GAAACTCGATGTGGATGAAGCTTTTCGAAAAGCATTGAC 1220
||||| || |||||| | | ||| |||| ||| |||||||||||| ||||| |||||
Sbjct 1481 GAAGGAAGTAATGTTTATCATGAA-CTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTGAC 1539
Query 1221 GACTTGGGGTCGATGGGTTGATAAGAATGTGAATCCAAAGAAA-TCCCTTGtttt-tttC 1278
|| ||||||||||||||||| |||||||||||||| ||| ||||| ||||| ||||
Sbjct 1540 TACATGGGGTCGATGGGTTGAGAAGAATGTGAATCCGGC-AAAGTCCCTCGTTTTCTTTC 1598
Query 1279 CGTGGTTATTCCCCGTCACATTTCAGCGGCGGGCAATGGAA-TGCGGGAGGAGCATGCGA 1337
| || |||||| | || |||||||| || ||||||||||| | | ||||||||||||||
Sbjct 1599 GG-GGCTATTCCGCATCCCATTTCAGTGGTGGGCAATGGAACT-CAGGAGGAGCATGCGA 1656
Query 1338 T-GATGAAACAGAACCGATCAAGAACGAGACTTACCTAACTCCTTACATGT-TGAAGATG 1395
| | ||||||||||||||||||||||| || |||||||| || ||| || | || |||
Sbjct 1657 TAGC-GAAACAGAACCGATCAAGAACGATACATACCTAACCCCGTACCCGTCTAAA-ATG 1714
Query 1396 GA-GATACTTGA-AAGAGT-TCTCAGTGGAATGAAAACGCCTGTCACGTATCTCAACATC 1452
| | | ||||| || ||| | | || || |||||||| |||||||| ||||| ||||||
Sbjct 1715 AAAG-TGCTTGAGAA-AGTGT-TAAGAGGTATGAAAACACCTGTCACTTATCTAAACATC 1771
Query 1453 ACGAGGTTAACTGATTACAGGAAGGACGCTCATCCGTC-GATATACCGGAAACAAAAACT 1511
||||| ||||| || ||||||||||||| ||| ||||| | ||||||||||||| | ||
Sbjct 1772 ACGAGATTAACGGACTACAGGAAGGACGGTCACCCGTCAG-TATACCGGAAACAGAG-CT 1829
Query 1512 -ATCCGCAGAAGA-AAGTAAA-TCACCATTGTTGTACCAAGACTGTAGCCACTGGTGCCT 1568
||| | | |||| || ||| || |||||| ||||||||||||| ||||| ||||||||
Sbjct 1830 TATCGGAAAAAGAGAA--AAAGTCGCCATTGCTGTACCAAGACTGCAGCCATTGGTGCCT 1887
Query 1569 CCCTGGGGTGCCTGATTCTTGGAACGAAATTCTCTATGCCGAGAT-ACTCGTAAAACT 1625
||| ||||| || || |||||||| ||||| ||||| || ||| | | |||| |||||
Sbjct 1888 CCCCGGGGTTCCAGACTCTTGGAATGAAATCCTCTACGCTGAGCTGA-TCGTCAAACT 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5