BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904097
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12020.2 | Symbols: | P-loop containing nucleoside triphosp... 191 6e-48
> AT3G12020.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:3826148-3834318
FORWARD LENGTH=3598
Length=3598
Score = 191 bits (103), Expect = 6e-48
Identities = 177/208 (85%), Gaps = 24/208 (12%)
Strand=Plus/Plus
Query 117 AAAAGAGATCACAGTTCAAGTGCCAGCGACCAGTCAA-ACT-GTCAAA-GT-A-TGGTCG 171
||||||||||||||||||||||||||||||||||||| | |||||| | | | |
Sbjct 1966 AAAAGAGATCACAGTTCAAGTGCCAGCGACCAGTCAAGTGTGGTCAAATCTAACAGCAC- 2024
Query 172 A--ATCAACTCCTCAAGGGGGACTGGGGAGGCAGTCATCTGCACACAGAATCAAGA-TTT 228
| ||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 2025 ACCATCAACTCCTCAA----G---GGGGAGGCAGTCATCTGCACACAGAATCAAGACTTT 2077
Query 229 --------TCGCCTTTGATGGAACAACTCTCAGAGCCTAGGAAAGACAGAGAAGCTTTAG 280
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2078 CAGAAGGCTCGCCTTTGATGGAACAACTCTCAGAGCCTAGGGAAGACAGAGAAGCTTTAG 2137
Query 281 AAGACAGTTCCCATGAAATGGAGATTCC 308
||||||||||||||||||||||||||||
Sbjct 2138 AAGACAGTTCCCATGAAATGGAGATTCC 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5