BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904107
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12145.1 | Symbols: FLR1, FLOR1 | Leucine-rich repeat (LRR) ... 667 0.0
AT3G12143.1 | Symbols: | pseudogene, similar to polygalacturon... 577 7e-164
> AT3G12145.1 | Symbols: FLR1, FLOR1 | Leucine-rich repeat (LRR)
family protein | chr3:3874499-3876237 REVERSE LENGTH=1405
Length=1405
Score = 667 bits (361), Expect = 0.0
Identities = 578/680 (85%), Gaps = 25/680 (4%)
Strand=Plus/Plus
Query 236 CCGGAAACATCCCACCCGCGATCACCAAGCTCAA-AAGCCTCGACACCCTCTTTTTTAAG 294
||||||||||||||| | | |||||||| ||||| || |||| |||| |||| || |||
Sbjct 473 CCGGAAACATCCCACGCACCATCACCAAACTCAAGAA-CCTCAACACTCTCTACTTGAAG 531
Query 295 TACAGC-AATTTCTCCGGTCCGATTCCTGATAACATCAGCGATCTCAAGAACCTCACCTA 353
||| | | | |||||||||||||||||||| |||||||||| ||||||| |||||| |
Sbjct 532 CACA-CTAGTCTCTCCGGTCCGATTCCTGATTACATCAGCGAGCTCAAGAGCCTCACGTT 590
Query 354 CTTGGGCCTTTCCTTTAACCAATTGACCGGTCCGATTCCCGGTTCGCTATCTCAGATGCC 413
||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 591 CTTGGACCTTTCTTTTAACCAATTTACCGGTCCAATTCCCGGTTCGCTATCTCAGATGCC 650
Query 414 GATGCTTCAAGCCATTGAGCTCAACGATAATAAGCTAACCGGTTCTATACCAGACTCTTT 473
|| |||| |||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 651 GAAGCTTGAAGCCATTCAAATCAACGATAATAAGCTAACCGGTTCTATACCAAACTCTTT 710
Query 474 CGGTTCTTTTGTTGGCAACATCCCTG-TACTCGAATTGTCTAACAATC-GCCTCTCAGGG 531
||||||||||||||||||| ||||| | ||| | |||||||||||| || | |||||
Sbjct 711 CGGTTCTTTTGTTGGCAACGTCCCTAAT-CTCTACTTGTCTAACAATAAGC-TGTCAGGA 768
Query 532 AAAATACCGGAATCGTTGTCAAAATACGACTTCAACGCAGTGT-TTCTGTCGGGAAACAG 590
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
Sbjct 769 AAAATACCGGAATCGTTGTCTAAATACGACTTCAACGCAGTGGATT-TGTCGGGAAATGG 827
Query 591 ATTC-ACCGGAGATGG-TTCCATGTTTTTCGGACGGAACAAAACAACTA-TACAACTGGA 647
||| | ||||||| || ||||| |||||||||||||||||||| | ||| | ||||
Sbjct 828 TTTCGAA-GGAGATGCCTTT-ATGTTCTTCGGACGGAACAAAACAAC-AGTACGAGTGGA 884
Query 648 TCTGTCGAGAAACATGTTTCAGTTCGATCTC-TCTAAGGTTAAATTTGCTAGGAGCATAC 706
| ||||||||||||||||| | ||||||||| || |||||||| || ||||| ||||||
Sbjct 885 TTTGTCGAGAAACATGTTTAATTTCGATCTCGTC-AAGGTTAAGTTCGCTAGAAGCATAG 943
Query 707 TTAT-GTTGGATCTGAGCCAAAACCGA-ATCTTTGGTAAGATTCCTCGGGTGCTAACTAC 764
|| | ||||||||||||||| |||| | |||| || ||||| || | | || ||||
Sbjct 944 TT-TCGTTGGATCTGAGCCAGAACC-ATATCTACGGGAAGATACCACCAGCACTGACTAA 1001
Query 765 CCTACGACGTCTCGAGCGTTTCAACGTGAGCTACAATCGTCTCTGCGGGAAAATCCCAAG 824
|||| || ||||||| ||||||||||||| |||| | ||||||||| |||||||||||
Sbjct 1002 ACTAC-AC--CTCGAGCATTTCAACGTGAGCGACAACCATCTCTGCGGAAAAATCCCAAG 1058
Query 825 TGGCGGTCGACTTCAGACCTTTGAACCATCTGCCTACTCTCATAACCTCTGTCTTTGTGG 884
|||||||| |||||||||||||||||||||||||| | |||| ||| |||||||||||||
Sbjct 1059 TGGCGGTCTACTTCAGACCTTTGAACCATCTGCCTTCGCTCACAACATCTGTCTTTGTGG 1118
Query 885 GACTCCGCTTAAGGCTTGTT 904
||||| |||||||||||||
Sbjct 1119 AACTCCCCTTAAGGCTTGTT 1138
> AT3G12143.1 | Symbols: | pseudogene, similar to polygalacturonase-inhibitor
protein, blastp match of 53% identity and 7.5e-64
P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor
protein {Citrus sp. cv. Sainumphung} |
chr3:3872314-3873608 REVERSE LENGTH=1295
Length=1295
Score = 577 bits (312), Expect = 7e-164
Identities = 358/381 (94%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 526 TCAGGGAAAATACCGGAATCGTTGTCAAAATACGACTTCAACGCAGTGTTTCTGTCGGGA 585
||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||
Sbjct 771 TCAGGGAAAATACCGGAGTCATTGTCAAAACACGACTTCAACGCTGTGTTTCTGTCGGGA 830
Query 586 AACAGATTCACCGGAGATGGTTCCATGTTTTTCGGACGGAACAAAACAACTATACAACTG 645
||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 831 AACAGTTTAACCGGAGATGGTTCCATGTTTTTCGGACGGAACAAAACAACAAGACAACTG 890
Query 646 GATCTGTCGAGAAACATGTTTCAGTTCGATCTCTCTAAGGTTAAATTTGCTAGGAGCATA 705
|||||||||||||||||||||||||||||| |||| ||| || | || ||||||||||||
Sbjct 891 GATCTGTCGAGAAACATGTTTCAGTTCGATATCTCCAAGATTGAGTTCGCTAGGAGCATA 950
Query 706 CTTATGTTGGATCTGAGCCAAAACCGAATCTTTGGTAAGATTCCTCGGGTGCTAACTACC 765
|||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 951 CTTACGTTGGATCTGAGCCAAAACCGAATCTTTGGTAAGATTCCTCGGGTGTTGACTACC 1010
Query 766 CTACGACGTCTCGAGCGTTTCAACGTGAGCTACAATCGTCTCTGCGGGAAAATCCCAAGT 825
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1011 CTACGAAGTCTCGAGCGTTTCAACGTGAGCTACAATAGTCTCTGCGGGAAAATCCCAAGT 1070
Query 826 GGCGGTCGACTTCAGACCTTTGAACCATCTGCCTACTCTCATAACCTCTGTCTTTGTGGG 885
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1071 GGCGGTCGCCTTCAGACCTTTGAACCATATGCCTACTCTCACAACCTCTGTCTTTGTGGG 1130
Query 886 ACTCCGCTTAAGGCTTGTTGA 906
|||| ||||||||||||||||
Sbjct 1131 ACTCTGCTTAAGGCTTGTTGA 1151
Score = 568 bits (307), Expect = 4e-161
Identities = 464/538 (86%), Gaps = 18/538 (3%)
Strand=Plus/Plus
Query 1 ATGAAGATCCTTGttcatctctccatcttcttctccatcct-tttcatctctctcccatc 59
||||| ||||| |||||||||| ||||||||||||||| | ||| | |||||||||||
Sbjct 175 ATGAATCTCCTTCTTCATCTCTCTATCTTCTTCTCCATCATCTTT-A--TCTCTCCCATC 231
Query 60 tt-ctcACAGCTGC-ACCGCAAATGACAAAAATGCCCTCCTTGAAATCAAGAAATCACTT 117
|| || |||| ||| ||| |||||||||| |||||||||||| |||||||||| || |||
Sbjct 232 TTCCT-ACAGTTGCAACC-CAAATGACAATAATGCCCTCCTTCAAATCAAGAAGTCCCTT 289
Query 118 AACAACCATCCCCT-CCTCTCGTCTTGGAAACCCCAAACCGATTGTTGCACCGTCTGGAG 176
||||||| | |||| |||||| || ||||| |||| ||||| ||||| || | |||||
Sbjct 290 AACAACCCT-CCCTACCTCTCCTCCTGGAACCCCCGAACCGGCTGTTGTACTGGCTGGAT 348
Query 177 CGGCGTCCAATGCACTGACGGCCGTGTCACCTACCT-AACTCTTTCCTCAAGTA-ATTTC 234
||| || |||||||||||||||| ||||||||||| || |||||| | |||| | ||
Sbjct 349 CGGAGTGGAATGCACTGACGGCCGCGTCACCTACCTCTAC-CTTTCCGCCAGTACA-ATC 406
Query 235 TCCGGAAACATCCCACCCGCGATCACCAAGCTCAAAAGCCTCGACAC-CCTCTTTTTTAA 293
|||||||| ||||||||||||||||||| |||||| || ||| || | ||||||| | ||
Sbjct 407 TCCGGAAATATCCCACCCGCGATCACCATGCTCAAGAGTCTCAAC-CTCCTCTTTATAAA 465
Query 294 GTACAGCAATTTCTCCGGTCCGATTCCTGATAACATCAGCGATCTCAAGAACCTCACCTA 353
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 466 ACACACCAATTTCTCCGGTCCGATTCCTGATAACATCAGCGACCTCAAGAACCTCACGTT 525
Query 354 CTTGGGCCTTTCCTTTAACCAATTGACCGGTCCGATTCCCGGTTCGCTATCTCAGATGCC 413
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 526 CTTGGACCTTTCCTTTAACCAATTTCCCGGTCCAATTCCCGGTTCGCTATCTCAGATGCC 585
Query 414 GATGCTTCAAGCCATTGAGCTCAACGATAATAAGCTAACCGGTTCTATACCAGACTCTTT 473
| |||| ||||||||||| || |||| |||||||||||||||||||||||| |||||||
Sbjct 586 CAAGCTTGAAGCCATTGAGATCCACGACAATAAGCTAACCGGTTCTATACCAAACTCTTT 645
Query 474 CGGTTCTTTTGTTGGCAACATCCCTGTACTCGAATTGTCTAACAATC-GCCTCTCAGG 530
||||||||||||||||||| |||||| |||||| ||||||||||||| || |||||||
Sbjct 646 CGGTTCTTTTGTTGGCAACGTCCCTGAACTCGACTTGTCTAACAATCAGC-TCTCAGG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5