BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904110 Length=669 Score E Sequences producing significant alignments: (Bits) Value AT3G12160.1 | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4... 1142 0.0 > AT3G12160.1 | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4D | chr3:3879495-3880437 REVERSE LENGTH=669 Length=669 Score = 1142 bits (618), Expect = 0.0 Identities = 652/669 (97%), Gaps = 0/669 (0%) Strand=Plus/Plus Query 1 ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTG 60 Query 61 ATCGGTGATTCCGCGGTTGGCAAAACTCAGCTGCTTGCTCGGTTCGCTAGGAATGAGTTT 120 ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 ATCGGTGATTCTGCCGTTGGCAAAACTCAGCTTCTTGCTCGGTTCGCTAGGAATGAGTTT 120 Query 121 AGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGAT 180 Query 181 AACAAAACCGTCAAAGCTCAGATTTGGGATACGGCTGGCCAAGAAAGATATAGGGCGGTG 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 AACAAAACCGTCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGATATAGGGCGGTG 240 Query 241 ACAAGCGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTATGACATGACCAAACGT 300 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 ACAAGTGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTACGACATGACCAAACGT 300 Query 301 CAATCATTCGATCACATGGCGAAATGGCTGGAAGAGTTAAGAGGACATGCGGACAAGAAC 360 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 301 CAATCATTCGATCACATGGCTAAATGGCTGGAAGAGTTACGAGGACATGCGGACAAGAAC 360 Query 361 ATAGTGATTATGCTAATTGGGAACAAGTGTGATCTTGGAAGCCTAAGAGCAGTGCCAACA 420 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 ATAGTGATTATGCTAATTGGGAACAAATGTGATCTTGGAAGCCTAAGAGCAGTGCCAACA 420 Query 421 GAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTT 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTA 480 Query 481 GAAGCTACCAATGTTGAAACAGCTTTTTTGACCATCTTAACAGAGATTTACCGTATAATC 540 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 481 GAAGCTACCAATGTTGAAACAGCATTTTTGACCATCTTAACAGAGATCTACCGAATAATC 540 Query 541 AGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAA 600 Query 601 GGAACTAGAATTATCATCCCGAGCGAGCAGGAGAGTGGGAAAAGAGGTGGATGTTGCGGT 660 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 601 GGAACTAGAATCATCATCCCGAGCGAGCAAGAGAGTGGGAAAAGAGGTGGATGTTGCGGC 660 Query 661 AAATCATAA 669 ||||| ||| Sbjct 661 AAATCGTAA 669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32350790668 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5