BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904110
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12160.1 | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4... 1142 0.0
> AT3G12160.1 | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog
A4D | chr3:3879495-3880437 REVERSE LENGTH=669
Length=669
Score = 1142 bits (618), Expect = 0.0
Identities = 652/669 (97%), Gaps = 0/669 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTG 60
Query 61 ATCGGTGATTCCGCGGTTGGCAAAACTCAGCTGCTTGCTCGGTTCGCTAGGAATGAGTTT 120
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATCGGTGATTCTGCCGTTGGCAAAACTCAGCTTCTTGCTCGGTTCGCTAGGAATGAGTTT 120
Query 121 AGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGAT 180
Query 181 AACAAAACCGTCAAAGCTCAGATTTGGGATACGGCTGGCCAAGAAAGATATAGGGCGGTG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AACAAAACCGTCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGATATAGGGCGGTG 240
Query 241 ACAAGCGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTATGACATGACCAAACGT 300
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ACAAGTGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTACGACATGACCAAACGT 300
Query 301 CAATCATTCGATCACATGGCGAAATGGCTGGAAGAGTTAAGAGGACATGCGGACAAGAAC 360
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 301 CAATCATTCGATCACATGGCTAAATGGCTGGAAGAGTTACGAGGACATGCGGACAAGAAC 360
Query 361 ATAGTGATTATGCTAATTGGGAACAAGTGTGATCTTGGAAGCCTAAGAGCAGTGCCAACA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATAGTGATTATGCTAATTGGGAACAAATGTGATCTTGGAAGCCTAAGAGCAGTGCCAACA 420
Query 421 GAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTA 480
Query 481 GAAGCTACCAATGTTGAAACAGCTTTTTTGACCATCTTAACAGAGATTTACCGTATAATC 540
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 481 GAAGCTACCAATGTTGAAACAGCATTTTTGACCATCTTAACAGAGATCTACCGAATAATC 540
Query 541 AGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAA 600
Query 601 GGAACTAGAATTATCATCCCGAGCGAGCAGGAGAGTGGGAAAAGAGGTGGATGTTGCGGT 660
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 GGAACTAGAATCATCATCCCGAGCGAGCAAGAGAGTGGGAAAAGAGGTGGATGTTGCGGC 660
Query 661 AAATCATAA 669
||||| |||
Sbjct 661 AAATCGTAA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5