BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904129
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12390.1 | Symbols: | Nascent polypeptide-associated comple... 749 0.0
AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated c... 459 2e-128
AT3G49470.1 | Symbols: NACA2 | nascent polypeptide-associated c... 145 5e-34
> AT3G12390.1 | Symbols: | Nascent polypeptide-associated complex
(NAC), alpha subunit family protein | chr3:3942257-3943809
FORWARD LENGTH=913
Length=913
Score = 749 bits (405), Expect = 0.0
Identities = 439/456 (96%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 73 GCAGGAGGTAAGTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAG 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GCAGGAGGTAAGTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAG 303
Query 133 CTCGGGATGAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATC 192
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTTGGCATGAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATC 363
Query 193 TTGTTTGTCATATCAAAACCTGATGTGTTCAAGAGCCCGGCATCAGACACATATGTGATC 252
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 364 TTGTTTGTCATATCAAAGCCTGATGTGTTCAAGAGTCCAGCATCAGACACATATGTGATC 423
Query 253 TTTGGAGAGGCCAAGATCGAGGATTTGAGCTCTCAGATCCAGTCACAGGCAGCAGAGCAA 312
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 424 TTTGGAGAGGCGAAGATCGAGGATTTGAGCTCTCAGATCCAGTCGCAAGCAGCAGAGCAA 483
Query 313 TTCAAGGCTCCAGATCTCAGCAATGTGATCTCAAAGGGTGAGTCCTCGAGCACTGCAGTT 372
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 484 TTCAAGGCACCAGATCTCAGCAATGTGATCTCAAAGGGTGAGTCATCGAGCGCTGCAGTG 543
Query 373 GTTCAGGATGATGAGGAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTG 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GTTCAGGATGATGAGGAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTG 603
Query 433 ATGACTCAAGCAGGAGTGTCGAGGCCTAGGGCAGTGAAGGCTCTCAAGGCTGCAGATGGA 492
|||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||
Sbjct 604 ATGACTCAAGCAGGAGTGTCTAGGCCAAATGCTGTGAAGGCTCTCAAGGCTGCAGATGGA 663
Query 493 GATATTGTCTCTGCCATCATGGAGCTTACCACCTAA 528
||||||||||||||||||||||||||||||||||||
Sbjct 664 GATATTGTCTCTGCCATCATGGAGCTTACCACCTAA 699
Score = 124 bits (67), Expect = 7e-28
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGACTACCGAAGAGAAAGAGATCCTCGCCGCCAAATTGGAAGAACAAAAGATCGATCTC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 88 ATGACTACCGAAGAGAAAGAGATCCTCGCCGCCAAATTGGAAGAACAGAAGATCGATCTC 147
Query 61 GATAAACCCGAAG 73
||||| |||||||
Sbjct 148 GATAAGCCCGAAG 160
> AT5G13850.1 | Symbols: NACA3 | nascent polypeptide-associated
complex subunit alpha-like protein 3 | chr5:4471277-4472855
FORWARD LENGTH=878
Length=878
Score = 459 bits (248), Expect = 2e-128
Identities = 398/466 (85%), Gaps = 27/466 (6%)
Strand=Plus/Plus
Query 84 GTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTCGGGATGAA 143
|||||| ||||||||||||||||| |||||||| ||||| ||| | ||||| ||||||||
Sbjct 240 GTCAAAGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCTATGTTGAAGCTTGGGATGAA 299
Query 144 ACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTCAT 203
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 300 ACCAATCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGAT 359
Query 204 ATCAAAACCTGATGTGTTCAAGAGCCCGGCATCAGACACATATGTGATCTTTGGAGAGGC 263
|||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||||
Sbjct 360 ATCAAAACCTGATGTGTTCAAGAGTCCAGCTTCAGATACATATGTGATCTTTGGTGAGGC 419
Query 264 CAAGATCGAGGATTTGAGCTCTCAGATCCAG--TCACAGGCAGCAGAGCAATTCAAGGCT 321
|||||| |||||||||||||| ||| | ||| ||| || | |||||||| |||||||||
Sbjct 420 CAAGATAGAGGATTTGAGCTCGCAGCTGCAGAGTCA-AGCC-GCAGAGCAGTTCAAGGCT 477
Query 322 CC-AGATCTCAGCAATGTGATCTCAAAGGGTGAGTCCTCGAG--C---A-CTGCAG-T-- 371
|| | | |||||||| ||||| ||| |||| || | ||||| | | |||||| |
Sbjct 478 CCCA-ACCTCAGCAACGTGATTTCACAGGGAGAAACATCGAGTGCTGCAACTGCAGCTGC 536
Query 372 TGTTCA-G--GATGATGA-G--GAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGA 425
|||||| | |||||||| | ||||| |||||||| || || |||||||||||||| ||
Sbjct 537 TGTTCAAGATGATGATGATGAAGAGGTAGACGAGGAGGGAGTAGAGCCAAAGGACATCGA 596
Query 426 G-TTGGTGATGACTCAAGCAGGAGTGTCGAGGCCTAGGGCAGTGAAGGCTCTCAAGGCT- 483
| ||| ||||||| |||||||||||||| | ||| |||||||| ||||| |||||| ||
Sbjct 597 GCTTG-TGATGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCGCTCAAG-CTC 654
Query 484 GC-AGATGGAGATATTGTCTCTGCCATCATGGAGCTTACCACCTAA 528
|| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 GCTA-ATGGAGATATAGTCTCTGCCATCATGGAGCTTACCACCTAA 699
> AT3G49470.1 | Symbols: NACA2 | nascent polypeptide-associated
complex subunit alpha-like protein 2 | chr3:18340976-18342489
FORWARD LENGTH=966
Length=966
Score = 145 bits (78), Expect = 5e-34
Identities = 170/213 (80%), Gaps = 11/213 (5%)
Strand=Plus/Plus
Query 82 AAG-TCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTCGGGAT 140
||| ||||| || || |||||||| ||||||||| | || || ||| | |||||||| ||
Sbjct 291 AAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGGAAGGCGATGTTGAAGCTCGGTAT 350
Query 141 GAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAA-GAATATC-TTGT-T 197
|||||| ||||||||||||| ||||| ||| || ||||| || ||| | | || | |
Sbjct 351 GAAACCTGTCACTGGTGTTAGTCGAGTAACCATC---AAGAG-AACGAAAAACGTTCTCT 406
Query 198 T-GTCATATCAAAACCTGATGTGTTCAAGAGCCCGGCA-TCAGACACATATGTGATCTTT 255
| | || || || |||||||| || |||||||| ||| ||||| || ||||| || ||
Sbjct 407 TCTTTATCTCTAAGCCTGATGTCTTTAAGAGCCC-GCATTCAGAAACCTATGTTATATTC 465
Query 256 GGAGAGGCCAAGATCGAGGATTTGAGCTCTCAG 288
|| ||||||||||||||||||||||||||||||
Sbjct 466 GGTGAGGCCAAGATCGAGGATTTGAGCTCTCAG 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25267775941
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5