BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904152
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 2217 0.0
> AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:4014213-4017869 FORWARD LENGTH=2353
Length=2353
Score = 2217 bits (1200), Expect = 0.0
Identities = 1373/1457 (94%), Gaps = 9/1457 (1%)
Strand=Plus/Plus
Query 542 CTCAATCTCACAGGAAAAGGTCTAGAACTGATGACTCACGGAATGAACAGAGAGAAGCTA 601
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 709 CTCAATCTCAGAGGAAAAGGTCTAGAACTGACGACTCACGGAATGAACAGAGGGAAGCTA 768
Query 602 AACCTGATGTCTCTCGCCGGCTGCTTCAGTTTGCTGTGCGAGATGCTCTAGCTATATCAA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AACCTGATGTCTCTCGCCGGCTGCTTCAGTTTGCTGTGCGAGATGCTCTAGCTATATCAA 828
Query 662 GGCCGGTAAATAGTTCGACTGAATCCTCATTAAAACGTCTTCGTTCAGTGGTATCCACAT 721
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 829 GGCCGGCAAATAGTTCGACTGAATCCTCATTAAAACGTCTTCGTTCAGTGGTGTCCACAT 888
Query 722 CTACTCAAGACTCATCTGACCCCGATCCAGCTCGGAAAATTCGATCGGTTGCAAGAGTTG 781
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||| || ||||
Sbjct 889 CTACTCAAAACTCATCTGACCCTGATCCAGCTCGGAAAATTCGATCTGTTGCTAGGGTTG 948
Query 782 TGAACCCCATGGCAACTGTTATGAAAGCTGTCGCCGAAGCAGCTGAAGATGCCAAGAAAC 841
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 949 TGAATCCCATGGCTACTGTTATGAAAGCTGTCGCCGAAGCAGCCGAAGATGCCAAGAAAC 1008
Query 842 CAAGATCTGGGAGAAGTGTCTTTGACAGAATTAGTCATTCTACTGGATTTTCAGAGACCC 901
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 CAAAATCTGGGAGAAGTGTCTTTGACAGAATTAGTCATTCTACTGGAT---CAGAGACCC 1065
Query 902 TGGACCAGCATAGGGTACATGGTGAAGTTTCCCCCAAGAATGAAGAATGTAGGAATTTTA 961
|||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1066 TGGACCAGAATATGGTACTTGGTGAAGTTTCCCCCAAGGATGAAGAATCTAGGAATTTTA 1125
Query 962 GCGAAGACCAGGATGCTGTACAGCTTCAATACACGCAGAGTCTTGACAACAATGGAGTGT 1021
|| ||| ||||| || ||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1126 GCCAAGGTCAGGAAGCGGTACAGCTTCAATACACACAGAGTCTTGCCAATAATGGAGTGT 1185
Query 1022 ATGTTGAGAAGATGACAACTTATGACACTGGCTTGCAGCCAGCTTTTTCGTCTGATCGAG 1081
|| ||||||| ||||||||| |||||||||||||| | |||| |||||||||||||||||
Sbjct 1186 ATTTTGAGAACATGACAACTAATGACACTGGCTTGAATCCAGATTTTTCGTCTGATCGAG 1245
Query 1082 GCAGACTCGGTTCAAGTGTTAATGTTTCTCATCCAAGTACTTTTCTTGGGAACAGAATTA 1141
||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 1246 GCAGACTCGGTTCAAGTGTTAATGTGTCTCACCCAAGTACTTATCTTGGGAACAGAATTA 1305
Query 1142 ACAATCCAAATAGTCTGCAGCATCGTTTGGTCGATGACTCCAAAAGACTTAAAGGGTTAA 1201
|||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 1306 ACAATCCAAATAGTCTGCAGCATCGTTTAGTCGATGACTCCAAACGAGTTAAAGGGACAA 1365
Query 1202 ATTATCAAAATCGCCTTACTGAAGTTG-ATACTAAGCATAAGACTGCAAGTTTCTCTGGC 1260
||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| |||
Sbjct 1366 ATTATCAAAATCGCCTTCCTGAAGTTGCA-ACCAAGCATAAGACTGCAAGTTTCTCAGGC 1424
Query 1261 AATGTAGATACAGGGAAAACAGTAA-GTTTAGAGGAGCAGACGAAAGTACCAGATGTGGG 1319
||| ||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||
Sbjct 1425 AATATAGATACAGGGAAAACAGTAAAGTT-AGAGGAGCAGAGGAAAATACCAGATGTGGG 1483
Query 1320 TCTGCAAAGATATATGGACGAAGGCAGATTAGTTTCTAGTGAAGCTATCAATCAATTATC 1379
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1484 TCTGCAAAGATATATGGACGAAGGCAGATTAGTTTCTAGTGAAGCTACCACTCAATTATC 1543
Query 1380 GACGCAGAAAATCTTGAGTGATACAATAAGGAATGGAAATATAAAACCTGCTGCCAATGT 1439
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct 1544 GACGCAGAAAATCTTGGGTGATACAATAGGGAATGGAAATGTAAAACCTGCTGCCAGTGT 1603
Query 1440 GAAAGAAGATTCAACGACCAATAAATCTGTTCCTGGGACATTATCCACTACCCGCCCTTT 1499
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GAAAGAAGAATCAACGACCAATAAATCTGTTCCTGGGACATTATCCACTACCCGCCCTTT 1663
Query 1500 GGAAGATGCGAGTTCTCGAACAATCTTTGTCGCCAATGTTCATTTTGGTGCCACCAAGGA 1559
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 GGAAGATGCTAGTTCTCGAACAATCTTTGTCGCCAATGTTCATTTTGGTGCCACCAAGGA 1723
Query 1560 TAGCCTTTCAAGGCATTTTAACAAGTGTGGTGAAGTGCTTAAAGCTATCATAGTTACAGA 1619
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 1724 CAGCCTTTCAAGGCATTTTAACAAGTTTGGTGAAGTGCTTAAAGCTTTCATAGTTACTGA 1783
Query 1620 TCCAGCAACAGGACAACCAAGTGGATCAGCGTACATTGAGTTCACGCGTAAAGAAGCTGC 1679
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1784 TCCAGCAACAGGACAACCAAGTGGATCAGCGTACATTGAGTTCACACGCAAAGAAGCTGC 1843
Query 1680 AGAGAATGCATTGTCTCTGGACGGTACCTCTTTCATGTCTCGGATTCTGAAGATTGTGAA 1739
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1844 AGAGAATGCATTGTCTCTGGATGGTACCTCTTTCATGTCTCGGATTCTCAAGATTGTGAA 1903
Query 1740 AGGAAGCAATGGGCAACAGCAAGAGGCTGCATCGAGCATGACATGGCCTCGAGGTGGAAG 1799
|||||||||||| ||| | ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1904 AGGAAGCAATGGACAAAATCAAGAGGCTGCATCGAGCATGTCATGGTCTCGAGGTGGAAG 1963
Query 1800 GTTCACAAGAGCGCCC-TCATACTTTAGAGGTGGTGCAGTTAGGGGTCGTTCTGTTGTTA 1858
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964 GTTCACAAGAGC-CCCATCATACTTTAGAGGTGGTGCAGTTAGGGGTCGTTCTGTTGTTA 2022
Query 1859 GAGGTGGAGCCAGGAGTATGCAATGGAAGCGCGATTCAGCTGACACTGGAAACAACAACA 1918
||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2023 GAGGTGGAGGCAGGAGTATGCAATGGAAGCGTGATTCAGCTGACACAGGAAACAACAACA 2082
Query 1919 ATGTAGCTCCCAACAATGCTCGTAGTCTCACGTACGTCCGAACAGAATCAAAATCAGACG 1978
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 2083 ATGTAGCTCCCAACAATGCTCGTAGTCTCACGTATGTCAGAGCAGAATCAAAATCAGACG 2142
Query 1979 GAATTGCCAACGATTGA 1995
|| ||||||||||||||
Sbjct 2143 GAGTTGCCAACGATTGA 2159
Score = 699 bits (378), Expect = 0.0
Identities = 441/470 (94%), Gaps = 9/470 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGCGCCGATCTAGTCGATGATCGGACCTTTAATGGTGATTTCAGTGTGGAAGGA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 243 ATGGGAAGCGCCGATCTAGTCGATGATCGGACCTTTAACGGTGATTTCAGTGTGGAAGGA 302
Query 61 GTTGCCAAGTTGAAAGAGATGGTCATGGTTAAACTCAAGGAGTTTATGGGCGATTACACG 120
||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 303 GTTGCTAAGTTGAAAGAGATGGTCAAGGATAAACTCAAGGAGTATATGGGCGATTACACG 362
Query 121 GATGACACTCTTGTGGAATATGTGATAGTCCTT-CTTAGAAATGGGAGAAGAAAAGAGGA 179
||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 363 GATGACATTCTTGTGGAATATGTGATCGTC-TTGCTTAGAAATGGGAGAAGAAAAGAGGA 421
Query 180 AGCAAAGAATGAATTGAAAATATTTCTTGGAGATGATAGCGACTCTTTTGTAGCCTGGTT 239
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 422 AGCAAATAATGAATTGAAGATATTTCTTGGAGATGATAGCGACTCTTTTGTGGCCTGGTT 481
Query 240 GTGGGATCATCTGGCTGAAAGTGTAGATGAATACTTTAGTTCTCATGTGGAGGGAACTAC 299
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 482 GTGGGATCATCTGGCTGAAAGTGTAGATGAGTACTTTAGTTCTAATGTGGAGGGAACTAC 541
Query 300 CATAAAAAGCTCATCGATAAGCAGTCAGAATGAGGATAAAGCACTTGTGCCTATGGATTC 359
|||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 542 CATAAAAAGCTCATTGATAAGCAGTCA---TGAGGATAAAGCACTTGTTCCTCTGGATTC 598
Query 360 TGAATCTGA-AAGGGGACGATCTGATAAATCAAATGGTGCACGCCGCGGTAGACAATGGA 418
||||| ||| ||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 599 TGAATATGATAAGGG-ACGATCTGATAAATCAAATGGTGCACGTCGTGGTAGACAATGGA 657
Query 419 GAAGCCAGCCAACTAATGTCTCTGAGATTCCC-CCTCTTCTGAGTTCTGA 467
|||||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct 658 GAAGCCAGCCGACTAATGTCTCTGAGAT-CCCTCCTCTTCTGAGCTCTGA 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5