BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904201
Length=3279
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13065.1 | Symbols: SRF4 | STRUBBELIG-receptor family 4 | ch... 3286 0.0
AT3G13062.2 | Symbols: | Polyketide cyclase/dehydrase and lipi... 1380 0.0
AT1G55960.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 593 3e-168
AT2G01372.1 | Symbols: | Pseudogene of AT3G13062 | chr2:169967... 95.3 3e-18
> AT3G13065.1 | Symbols: SRF4 | STRUBBELIG-receptor family 4 |
chr3:4187371-4191298 FORWARD LENGTH=2638
Length=2638
Score = 3286 bits (1779), Expect = 0.0
Identities = 1909/1973 (97%), Gaps = 4/1973 (0%)
Strand=Plus/Plus
Query 1309 GTATCGGCTCTTAATGACGCTTATAAGAGCATGAACTCTCCATCAAAACTTAAAGGATGG 1368
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 233 GTATCTGCTCTTAATGACGCTTATAAGAGCATGAACTCTCCATCAAAACTCAAAGGCTGG 292
Query 1369 TCTTCAAGCGGAGGCGATCCTTGTGGTGATTCATGGGATGGCATTACATGCAAAGGCTCT 1428
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 293 TCTTCAAGCGGAGGCGATCCTTGTGGCGATTCGTGGGATGGCATTACTTGCAAAGGCTCT 352
Query 1429 TCTGTTACTGAAATAAAAGTATCGGGACGTGGACTCAGTGGATCTTTAGGTTACCAGCTT 1488
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 353 TCTGTTACTGAAATAAAAGTATCTGGACGTGGACTCAGTGGATCTTTAGGTTACCAGCTT 412
Query 1489 GGAAACTTGAAATCACTCACTTACCTTGATGTAAGCAAGAACAATCTTAACGGAAACTTA 1548
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGAAACTTGAAATCGCTCACTTACCTTGATGTAAGCAAGAACAATCTTAACGGAAACTTA 472
Query 1549 CCCTACCAGCTTCCTGACAAGCTTACTTATCTAGATGGCTCTGAGAATGACTTCAACGGT 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CCCTACCAGCTTCCTGACAAGCTTACTTATCTAGATGGCTCTGAGAATGACTTCAACGGT 532
Query 1609 AATGTGCCATACTCGGTATCTCTCATGAATGATCTCAGTTACCTAAACCTTGGCCGTAAC 1668
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 533 AATGTGCCATATTCGGTGTCTCTCATGAACGACCTCAGTTACCTAAACCTTGGCCGTAAC 592
Query 1669 AACCTCAATGGTGAACTCAGCGACATGTTTCAAAAGCTTCCAAAACTTGAAACAATTGAT 1728
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCTCAATGGTGAACTCAGTGACATGTTTCAAAAGCTTCCAAAACTTGAAACAATTGAT 652
Query 1729 CTGTCTTCCAATCAACTCACGGGAAAACTACCGCAGAGTTTTGCCAATCTAACAGGCCTT 1788
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 CTTTCTTCCAATCAACTCACGGGAAAACTACCGCAGAGTTTTGCCAATCTAACAGGTCTT 712
Query 1789 AAAACACTGCACTTGCAAGAAAACCAATTCAAAGGCTCTATAAATGCTCTCAGGGACCTC 1848
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AAAACACTGCATTTGCAAGAAAACCAATTCAAAGGCTCTATAAATGCTCTCAGGGACCTC 772
Query 1849 CCTCAGATTGATGATGTAAACGTCGCAAACAATCAATTTACTGGTTGGATCCCAAACGAG 1908
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 CCTCAGATTGATGATGTAAACGTAGCAAACAATCAATTTACTGGTTGGATCCCAAACGAG 832
Query 1909 TTGAAGAACATTGGAAACCTTGAAACTGGAGGAAACAAGTGGTCAAGCGGTAGAGCTCCT 1968
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGAAGAATATTGGAAACCTTGAAACTGGAGGAAACAAGTGGTCAAGCGGTAGAGCTCCT 892
Query 1969 TCACCACCTCCCGGAACCCGTCACATAGACAGAAACTCATCGGGAGGCGGTGGAGGAAGC 2028
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 893 TCACCACCTCCGGGAACCCGTCACATAGACAGAAACTCATCAGGAGGCGGTGGAGGAAGC 952
Query 2029 AGCAAGGCTCTGACACTTGGAGTTATAATAGCAGTTTCTTGTATAGGTGGACTCATTTTA 2088
||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||
Sbjct 953 AGCAAGGCTCTGACACTAGGAGTTATAATAGCGGTGTCTTCTATAGGTGGACTCATTTTA 1012
Query 2089 TTTGCAGGAG-TGATTGCATTGTTTTCTCGAAGAAAGAACTCTCATCATTCTTCTCACTT 2147
|||||||| | ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1013 TTTGCAGG-GTTGATTGCATTGATTTCTCGAAGAAAGAACTCTAATGATTCTTCTCACTT 1071
Query 2148 TTTCGACGAAGAGAAAGGATCCAACCGAAACAAGCCACTCTTCACACCACAATCCTCTCA 2207
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1072 TTTCGACGACGAGAAAGGAACCAACCGAAGCAAGCCACTCTTCACACCACAATCCTCTCA 1131
Query 2208 GATGCTTCAATTCGATAATATGGAAGAATTCAAAGGCCAGAAGACAGTTGATTCTAATAC 2267
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1132 GATGCTTCAATTCGATAATATGGAAGAATTCAAAAACCAGAAGACAGTTGATTCTAATAC 1191
Query 2268 TTCACTTGAAACAAAGCCTTCTGTTAAAAGAACTTCTTCTGTCAGTTTCAAGAACTCTCC 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TTCACTTGAAACAAAGCCTTCTGTTAAAAGAACTTCTTCTGTCAGTTTCAAGAACTCTCC 1251
Query 2328 TACTTTTCATCTCATACCTTCTACGCAAGTGGCTGCAACCCCTGATCATTCCTCCACC-C 2386
|||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||| |
Sbjct 1252 TACTTTTCATCTCATACCTTCTACCCAAGTGGCTGCTACCCCTGACCGTTCCTCCACCTC 1311
Query 2387 CCGAAAACTCTCCTGATACACGCGGTGTGAAGGTGTTTTCACTAACGGATTTGCAGAATT 2446
|| || ||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 1312 CC-AAGACTCTCCTGATACACGCGGTGTGAAAGCGTTTTCACTAGCGGATTTGCAGAATA 1370
Query 2447 CCGCGTCTTGTTTCTCTCCGAATCGCCTTCTTGGTGAAGGAACCATTGGACGTGTTTATA 2506
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CCGCGTCTTGTTTCTCGCCGAATCGCCTTCTTGGTGAAGGAACCATTGGACGTGTTTATA 1430
Query 2507 AAGCTAAATTTCAAGATGGAAGGAAATATGCAGTCAAAGAGATTGATTCTTCACTGTTAG 2566
||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1431 AAGCTAAATTTCAGGATGGAAGGAAATTTGCAGTCAAAGAGATTGATTCTTCTCTGTTAG 1490
Query 2567 GAAAAGGAAATCCGGAAGAGTTTTCACACATAGTGTCGAGTATCTCGAGTATTCACCACA 2626
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GAAAAGGCAATCCGGAAGAGTTTTCACACATAGTGTCGAGTATCTCGAGTATTCACCACA 1550
Query 2627 AGAATATGGCAGAACTCGTGGGTTATTGTTCAGAACAAGGAAGGAATATGCTTGTTTATG 2686
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1551 AGAATATGGCAGAACTCGTGGGTTATTGTTCAGAACAAGGAAGAAATATGCTTGTTTATG 1610
Query 2687 AGTATTTCACAAGTGGATCACTTCACAGATTTCTTCACCTGTCTGATGATTTCAGCAAAC 2746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 AGTATTTCACAAGTGGATCACTTCACAGATTTCTTCACCTGTCTGATGATTTCAGCAAAC 1670
Query 2747 CATTAACGTGGAACACCAGAGTCCGAATCGCTCTTGGAACTGCTCAAGCTATAGAGTACC 2806
|||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||
Sbjct 1671 CATTGACGTGGAACACCAGAATCCGAATCGCTCTCGGAACTGCTAAAGCTATAGAGTACC 1730
Query 2807 TTCATGAAACATGTTCGCCTCCGCTAGTTCACAAGAACATCAAGTCATCGAACATTTTAC 2866
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1731 TTCATGAAACATGTTCGCCTCCGCTAGTTCACAAGAACATCAAGTCATCAAACATTTTAC 1790
Query 2867 TCGACAATGAGCTAAATCCCCGCCTCTCAGACTATGGCTTGGCAAACTTTCACCACCGCA 2926
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TTGATAATGAGCTAAATCCCCGCCTCTCAGACTATGGCTTGGCAAACTTTCACCACCGCA 1850
Query 2927 CAAGTCAGAATCTTGGAGTTGGATACAATGCCCCGGAATGCACAGATCCCTCGGCTTACA 2986
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1851 CAAGTCAGAATCTTGGAGTTGGATACAATGCCCCAGAATGCACAGATCCCTCCGCTTACA 1910
Query 2987 CACAAAAGAGCGACGTATACAGCTTTGGTGTGGTGATGCTTGAGCTGCTAACTGGTCGAA 3046
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 CACAAAAGAGCGACGTGTACAGCTTTGGTGTGGTGATGCTTGAGCTGCTAACTGGTCGAA 1970
Query 3047 CGCCTTATGACAGTGAGAGGCCAAAAGCAGAACAGTCTTTAGTTCGTTGGGCAAAGCCGC 3106
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AGCCTTATGACAGTGGGAGGCCAAAAGCAGAACAGTCTTTAGTTCGTTGGGCAAAGCCGC 2030
Query 3107 AGCTTAAAGACATGGATACTCTGGATGAAATGGTGGATCCCGCGTTGTGCGGACTCTACG 3166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 AGCTTAAAGACATGGATACTCTGGATGAAATGGTGGATCCCGCGTTGTGCGGACTCTACG 2090
Query 3167 CTCCAGAATCTGTATCATCATTCGCGGATATAGTTTCCATCTGCGTAATGACGGAGCCTG 3226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 CTCCAGAATCTGTATCATCATTCGCGGATATAGTTTCCATCTGCGTAATGACGGAGCCTG 2150
Query 3227 GACTTCGGCCTCCAGTGTCAAATGTGGTGGAGGCATTGAAGAGGCTAGTGTAG 3279
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 GACTTAGGCCTCCAGTGTCAAATGTGGTGGAGGCATTGAAGAGGCTAGTGTAG 2203
> AT3G13062.2 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:4184569-4187453 FORWARD
LENGTH=1716
Length=1716
Score = 1380 bits (747), Expect = 0.0
Identities = 870/928 (94%), Gaps = 14/928 (2%)
Strand=Plus/Plus
Query 1 ATGAATAGTGGTGATACCTTATCGACGTTAGCTCAATTTATCTCCTCTTCCGAGAGATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ATGAATAGTGGTGATACCTTATCGACGTTAGCTCAATTTATCTCCTCTTCCGAGAGATTT 268
Query 61 TTCCGGCGAGCTGACGGGT-ATGGAGGCTTTTGTTATTGCTGGGCCACCGTGTTCGCACT 119
||||||||||||||| ||| ||| || ||||||||||||||||||||||||| |||||||
Sbjct 269 TTCCGGCGAGCTGAC-GGTGATGTAGTCTTTTGTTATTGCTGGGCCACCGTGCTCGCACT 327
Query 120 TGTCTTCATTCTTTTCTACCAATTCGTCCTTTCCCCAAAACTCCGATTCTTCAGTCATGc 179
||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 328 TGTCTTCATTCTTCTCTACCAATTCTTCCTTTCCCGGAAATTCCGATTCTTCAGTCATG- 386
Query 180 ttcttcttcttcttcttcCCCTGTTGTCTCGGTTTCTCAATCTCTGAGCTCCCAATCAAG 239
||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 387 -----CTTCTTCTTCTTCCCCTGTCGTCTCGGTTTCTCAATCTCTCAGCTCCCAATCAGG 441
Query 240 AATATCTACTACACTTGTTTCTGATGAAGATCTAAAGGGTCTGTTTGAAAAATTGGAGGA 299
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 442 AATATCTACTACACTTGTTTCTGATGAAGATCTAAAGGGTCTGATTCAAAAATTGGGGGA 501
Query 300 AACAAGTGAGGATGCTCAGATATGGGAAAATGTTATTCAGAAAAGCAACCCTCGCGTCTC 359
|| ||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 502 AAGAAGTGAGGATGCTGAGATATGGGAAGATGTTATTAAGAAAAGCAACCCTCGTATCTC 561
Query 360 ATACACTGCTAAATGCTGCAAACCAACAGATGGTGGTCCCATGAAGTATTTGAGTACTAC 419
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 562 CTACACTGCTAAATGCTGCAAACCAACAGATGGTAGTCCCATGAAGTATCTGAGTACAAC 621
Query 420 AGTGTTTGAGGATTGCTCGCCAGAGGTTTTGAGGGACTTTTACATGGACAATGAATACAG 479
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGTGTTTGAGGATTGCTCCCCAGAGGTTTTGAGGGACTTTTACATGGACAATGAATACAG 681
Query 480 GAAACAATGGGATAAAACTGTCGTTGAGCATGAGCAGTTGCAGGTTGACAGTAATAGTGG 539
|||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 682 GAAACAATGGGACAAGACTGTGGTTGAGCATGAGCAATTGCAGGTTGACAGTAATAGTGG 741
Query 540 AATCGAGATTGGTCGCACTATAAAAAAGTTTCCCTTGTTAACACCAAGGGAGTATGTATT 599
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 742 GATTGAGATTGGTCGCACTATAAAAAAGTTTCCCTTGTTGACTCCAAGGGAGTATGTATT 801
Query 600 AGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGGAATGTGATCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AGCGTGGAAATTGTGGGAGGGGAAGGATAAGTTTTACTGTTTCATCAAGGAATGTGATCA 861
Query 660 CAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CAATATGGTGCCGCAACAGAGGAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCG 921
Query 720 AATTAGGAAAGG-CA----AG-AACGCTTGTGAGATACACATGTTTCACCAGGAAGATGC 773
||||||||||| | || ||||||||||||||||||||| |||||||||| |||||
Sbjct 922 AATTAGGAAAGTTCCTGGTAGGAACGCTTGTGAGATACACATGGTTCACCAGGAGGATGC 981
Query 774 GGGATTAAATGTTGAGATGGCAAAGCTTGCTTTCTCTAGAGGCATATGGAGTTACGTTTG 833
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 982 TGGATTAAATGTTGAGATGGCAAAGCTTGCTTTCTCAAGAGGCATATGGAGTTACGTTTG 1041
Query 834 TAAGATGGAAAATGCACTTCGTAAGTACATTGCAACCAGTCATAGACCCCAAGGGCCCAC 893
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1042 TAAGATGGAAAATGCACTTCGCAAGTACATTGCAACCAGTCATCGACCCCAAGGGCCCAC 1101
Query 894 TTTATCTGCTGTAAGCTTAATGAAGAAG 921
||||||||||||||||||||||| |||
Sbjct 1102 ATTATCTGCTGTAAGCTTAATGAAAAAG 1129
Score = 440 bits (238), Expect = 4e-122
Identities = 271/287 (94%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 1025 AGATTCCATCAGAGTTAGAAAGTCAGACAGATGACATCACAAACTCCTTGGGAACTACTA 1084
|||||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||| |
Sbjct 1128 AGATTCCATCGGAGTTAGAAAGTCAGACAGACGACATTACAAACTCCTCGGGAACTACCA 1187
Query 1085 CTAGTGGTCTGCACACAGGTGAAGGAGCCAAACGGAAGAAACTGTTGAGAAAGCCTTCAA 1144
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CTAGTGGTATGCACACAGGTGAAGGAGCCAAACGGAAGAAACTGTTGAGAAAGCCTTCAA 1247
Query 1145 AGAAACTGATAGCAAATGGTATGTTACTTTTGGGCGGTGCAGTTGGTGGTGCAATCTGCC 1204
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1248 AGAAACTGATAGCAAATGGTATGTTACTTGTGGGCGGTGCCGTTGGTGGTGCAATCTGCC 1307
Query 1205 TGTCTCGTGGTCACTCCGCCTT-GGGAGCAAAGGTCGCCTTGGCCTACTTCTTGTCGAAG 1263
|||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||
Sbjct 1308 TGTCTCGTGGTCACTCCGCCTTAGGG-GCAAAGGTCGCGTTGGCTTACTTCTTGTCGAAG 1366
Query 1264 ATGAGAAAACGTGGAGCTCCACTGAGTCAAACAACCCAAAACGCTGT 1310
|||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 1367 ATGAGAAAGCGTGGAGCTCAACTGAGTCAAACTTCCCAAAACGCTGT 1413
> AT1G55960.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:20927643-20930017 REVERSE
LENGTH=1723
Length=1723
Score = 593 bits (321), Expect = 3e-168
Identities = 593/718 (83%), Gaps = 44/718 (6%)
Strand=Plus/Plus
Query 228 CTCCCAATCAAGAATATCTACTACACTTGTTTCTGATGAAGATCT-AAAGGGTCTGTTTG 286
||| |||||||| ||||| | | ||| || |||||||||||| | ||| |||| | |
Sbjct 414 CTCTCAATCAAGGATATC--C-AAACTAGTCTCTGATGAAGATTTGAAA-TTTCTGATCG 469
Query 287 AAAAATT---GGAGGAAACAAGTGAGGATGCTC--AGATATGGGAAAATGTTATTCAGAA 341
| || || ||||||||||| ||| | | | ||||||||||| |||||||||| ||
Sbjct 470 AGAATTTGGAGGAGGAAACAAATGA--TTCCACGGAGATATGGGAACATGTTATTCACAA 527
Query 342 AAGCAACCCTCGCGTCTCATACACTGCTAAATGCTGCAAA-CCAACAGAT---GGTGGTC 397
||||||| |||| | |||||| |||||||| |||||||| |||| |||| |||||||
Sbjct 528 AAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACCCAA-AGATGGCGGTGGTC 586
Query 398 CCATGAAGTATTTGAGTACT-ACAGTGTTTGAGGATTGCTC-GCCAGAGGTTTTGAGGGA 455
| |||||||| | ||| | || || || |||| || ||| | ||||| || |||||||
Sbjct 587 CTATGAAGTACCTAAGT-GTCACGGTCTTCGAGGGTTTCTCTG-CAGAGATTGTGAGGGA 644
Query 456 CTTTTACATGGACAATGAATACAGGAAACAATGGGATAAAACTGTCGTTGAGCATGAGCA 515
|||||||||||||||||| || ||||||| ||||||||| ||||| ||||||||||||||
Sbjct 645 CTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTGGTTGAGCATGAGCA 704
Query 516 GTTGCAGGTTGACAGTAATAGTGGAATCGAGATTGGTCGCACTATAAAAAAGTTTCCCTT 575
|||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||||||
Sbjct 705 GTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCATTAAAAAGTTTCCCTT 764
Query 576 GTTAACACCAAGGGAGTATGTAT-TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGT--T 632
||| ||| | || ||||| || | |||| |||| ||||||| | || ||||| ||| |
Sbjct 765 GTTGACATCGAGAGAGTACGT-TCTAGCTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGT 823
Query 633 T-TACTGTTTCATCAA-GGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTA 690
| |||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 824 TCTACTGTTTCA-CAAAGGAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTA 882
Query 691 CGTGTAAGTTA-TTTCAGATCTGGTTGGCGAATTAGGAAAGG-CA----AGAAC-GCTTG 743
||||||||||| ||| ||||||||||||||||| ||| ||| | |||| || ||
Sbjct 883 CGTGTAAGTTACTTT-AGATCTGGTTGGCGAATCAGGCAAGTTCCCGGTAGAAATGCGTG 941
Query 744 TGAGATACACA-TGTTTCACCAGGAAGA-TGC-GGGATTAAATGTTGAGATGGCAAAGCT 800
|||||| || | ||||||||||||| || ||| ||| ||||||||||||||||| |||||
Sbjct 942 TGAGAT-CAAAATGTTTCACCAGGA-GAATGCTGGG-TTAAATGTTGAGATGGCCAAGCT 998
Query 801 TGCTTTCTCTAGAGGCATATGGAGTTACGTTTGTAAGATGGAAAATGCACTTCGTAAGTA 860
|| ||||| | ||||||||||||||||||||||||||||||||| || ||| |||| ||
Sbjct 999 CGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTAAATA 1058
Query 861 CATTGCAACCAGTCATAGACCCCAAGGGCCCACTT-TATCTGCTGTAAGCTTAATGAA 917
||| ||||||||||||||| ||||||| |||| || |||||||||| | |||||||||
Sbjct 1059 CATAGCAACCAGTCATAGAACCCAAGGACCCA-TTCTATCTGCTGTCACCTTAATGAA 1115
> AT2G01372.1 | Symbols: | Pseudogene of AT3G13062 | chr2:169967-170613
REVERSE LENGTH=647
Length=647
Score = 95.3 bits (51), Expect = 3e-18
Identities = 68/76 (89%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 661 AATATGGT-GCCGCAACAGAGGAAGTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCG 719
|||||||| | | |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 411 AATATGGTAG-CACAACAGAGGAAGTATGTACGTGTAAGTTATTTTAGAACTGGTTGGCG 469
Query 720 AATTAGGAAAGGCAAG 735
||| | | ||||||||
Sbjct 470 AATCAAGCAAGGCAAG 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163142898636
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5