BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904212
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13170.1 | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI, ... 1779 0.0
> AT3G13170.1 | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI,
subunit A protein | chr3:4231560-4234192 REVERSE LENGTH=1089
Length=1089
Score = 1779 bits (963), Expect = 0.0
Identities = 1049/1091 (96%), Gaps = 4/1091 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGGAAAATTTC-CGATTTCAGAAACGACTAATTTGCTTCAAAGGATCAAAGATTT 59
|||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGAAAA-TTCGCTATTTCAGAATCGACTAATTTGCTTCAAAGGATCAAAGATTT 59
Query 60 TACTCGATCGATCGTTGAAGATCTGGCTGAAGGAAGATCTCCAAAAATTTCCATCAATCG 119
||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TACTCAATCGGTCGTTGTAGATCTGGCTGAAGGAAGATCTCCAAAAATTTCCATCAATCA 119
Query 120 ATTCAGGAACTATTGCATCAATCCAGAAGCGGATTGCTTATGCAGCTCTGATACACCAAA 179
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 120 ATTCAGGAACTATTGCATGAATCCAGAAGCTGATTGCTTATGCAGCTCTGATAAACCAAA 179
Query 180 GGGTCAGGAAATTCTCACTCTTGAG-AGGAAACCCCAAACCTACAGAATCGATATGTTGC 238
||||||||||||| |||||||| || ||| |||| |||||||||||||||||||||||||
Sbjct 180 GGGTCAGGAAATTTTCACTCTTAAGAAGG-AACCACAAACCTACAGAATCGATATGTTGC 238
Query 239 TAAGAGTATTGTTGATTGTCCAACAACTTCTTCAAGAAAATAGACATGCATCCAAAAGAG 298
|||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||
Sbjct 239 TAAGAGTATTGTTGATAGTCCAACAACTTCTGCAAGAAAATAGACATGCTTCGAAAAGAG 298
Query 299 ATATCTACTACATGCATCCTTCAGCATTCAAAGCACAATCCATTGTGGACCGCGCCATTG 358
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||
Sbjct 299 ATATCTACTACATGCATCCATCAGCTTTCAAAGCACAATCCATTGTGGACCGTGCAATTG 358
Query 359 GTGATATATGCATTCTTTTTCAGTGTAGTCGGTACAACTTGAATGTGGTTTCTGTTGGAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGATATATGCATTCTTTTTCAGTGTAGTCGGTACAACTTGAATGTGGTTTCTGTTGGAA 418
Query 419 ACGGGTTGGTGATGTGTTGGTTAAAATTTAGGGAAGCTGGAAGGAAGTTTGATTGTTTAA 478
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 ACGGGTTGGTGATGGGTTGGTTAAAATTTAGGGAAGCTGGAAGGAAATTTGATTGTTTAA 478
Query 479 ACAGCTTGAACACTGCATATCCCGTTCCTGTTCTTGTAGAGGAAGTCGAAGATATTGTTA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACAGCTTGAACACTGCATATCCCGTTCCTGTTCTTGTAGAGGAAGTCGAAGATATTGTTA 538
Query 539 GCTTAGCAGAGTATATACTGGTTGTGGAAAAAGAAACAGTATTCCAGCGTTTAGCAAATG 598
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCTTAGCTGAGTACATACTGGTTGTGGAAAAAGAAACAGTATTCCAGCGTTTAGCAAATG 598
Query 599 ACATGTTTTGCAAGACGAACCGCTGCATTGTTATCACAGGAAGAGGATATCCAGATGTCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACATGTTTTGCAAGACGAACCGCTGCATTGTTATCACAGGAAGAGGATATCCAGATGTCT 658
Query 659 CAACAAGAAGGTTCTTGCGACTCCTCATGGAGAAGTTGCATCTACCTGTGCATTGTCTAG 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 CAACAAGAAGGTTCTTGCGACTCCTGATGGAGAAGTTGCATCTACCTGTGCATTGTCTAG 718
Query 719 TCGACTGTGATCCATATGGCTTTGAGATCCTAGCCACATACCGTTTTGGCTCCATGCAAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCGACTGTGATCCATATGGCTTTGAGATCCTAGCCACATACCGTTTTGGCTCCATGCAAA 778
Query 779 TGGCCTATGATATTGAATCATTACGAGCACCAGATATGAAATGGTTGGGAGCTTTTCCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGGCCTATGATATTGAATCATTACGAGCACCAGATATGAAATGGTTGGGAGCTTTTCCTT 838
Query 839 CAGACTCTGAGATATACAGTGTTCCCAAACAGTGTCTTTTGCCTTTGACAGAAGAAGATA 898
||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 CAGACTCTGAGGTATATAGTGTTCCCAAACAGTGTCTTTTGCCACTGACAGAAGAAGATA 898
Query 899 AGAAAAGAACTGAAGCATTGTTGCTTAGATGCTACCTGAAGCGTGAAATGCCGCGATGGA 958
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 899 AGAAAAGAACTGAAGCAATGTTGCTTAGATGCTACCTGAAGCGTGAAATGCCACAATGGA 958
Query 959 GGTTGGAACTTGAAACGATGCTGAAAAGAGGAGTGAAGTTTGAGATCGAAGCACTCTCAG 1018
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 959 GGTTGGAACTTGAAACGATGTTGAAAAGAGGGGTCAAGTTTGAGATCGAAGCACTCTCAG 1018
Query 1019 TTCACTCACTGTCCTTTTTGTCAGAGGTTTATATTCCTTCTAAGATTCGTCGTGAGGTAA 1078
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1019 TTCACTCACTGTCCTTTTTGTCAGAGGTATATATTCCTTCTAAGATTCGTCGTGAAGTAA 1078
Query 1079 GCTCACCTTGA 1089
|||| ||||||
Sbjct 1079 GCTCTCCTTGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5