BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904224
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13226.1 | Symbols: | regulatory protein RecX family protei... 1663 0.0
> AT3G13226.1 | Symbols: | regulatory protein RecX family protein
| chr3:4264295-4266362 REVERSE LENGTH=1372
Length=1372
Score = 1663 bits (900), Expect = 0.0
Identities = 1073/1154 (93%), Gaps = 22/1154 (2%)
Strand=Plus/Plus
Query 1 ATGCTGAAACTAGGGTTTCGTTTATCGATTGCCATTC-A-A-CATCGCGTCTT-CGTTAT 56
|||||||||||||||||||| ||| |||||| ||||| | | |||||| |||| || |||
Sbjct 77 ATGCTGAAACTAGGGTTTCGGTTAGCGATTGGCATTCAACATCATCGCCTCTTCCG-TAT 135
Query 57 TCCATGGGTGAAGAGACACTCTGCACCTAGAATCGTGTGTTCAGACCAGCGGGACTACAG 116
|||||||| |||||||||||||| |||||||||| ||||||| || |||||||| ||| |
Sbjct 136 TCCATGGGCGAAGAGACACTCTGTACCTAGAATCTTGTGTTCTGAGCAGCGGGATTACTG 195
Query 117 TTCGTCGGGTCTGATTAAGTATGTTCCAAACAAGTCTCGGAAGATTACTCAAGATTTGAC 176
||| || ||||||| ||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 196 TTCATCAGGTCTGACAAAGTATGTTCCTAAGAAGTCTCGGAAGATTACTGAAGATTTGAC 255
Query 177 ATCTCAGC-CTCTTGATGTTACTAGATTGGATCATAGTGTGTTGGGATCTCAAGTTAAGG 235
|||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 256 ATCTCAGCAAT-TTGATGTTACTAGAGTGGATCATAGTGTGTTGGGATTTCAAGTTAAGG 314
Query 236 GTAACAGCAAAGAGGCTAGAGATGGCACATTTTTGGATCTGCAAGA-GAAGAATGATACT 294
|||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 315 GTAACAGCAAAGAGGCTAGAGATGGCTCATTTTTGGATCTGCAAGAGGAA-AATGATACT 373
Query 295 GGAAGTTACATGAATGTGTCCTGTGATGATTCTGATGAAGGTATTT-TGAGTTTGGACAA 353
|||||||||| ||||||||| |||||||| |||||||||||| ||| |||||||||||||
Sbjct 374 GGAAGTTACACGAATGTGTCTTGTGATGACTCTGATGAAGGT-TTTATGAGTTTGGACAA 432
Query 354 GGGTATAAATGCTAGTAGATGGGATCATAGTGTTTTGGGGTCTAAAGTCAAGG------- 406
||||||| |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 433 GGGTATAGATGCTAGTAGATTGGATCATAGTGTATTGGGGTCTAAAGTGAAGGCTAACAT 492
Query 407 --AAGAGACCGGAGAGGGTACTG-TTTTACATCTGCGAGTTAAAAATGATGCTGAAATGT 463
||||||| ||||||| ||||| |||| |||||||| | ||||||||||||||| ||||
Sbjct 493 CAAAGAGACTGGAGAGGATACTGATTTT-CATCTGCGGGATAAAAATGATGCTGATATGT 551
Query 464 ACTCTGATGCTTCTTGTGATGACTCTAATGAAGAAAGCAGCAACGAAGTTAGATCTACAG 523
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 552 ACTCTGATGTTTCTTGTGATGACTCTAATGATGAAAGCAGCAACGAAGTTAGATCTACAG 611
Query 524 GCTATAAGTCGACGAGACAACACAAACAAGCTTATGATAAAGTCAAACTACATATAGAAG 583
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 612 GCTATAAGTCGACGAGACAACACAAACAAGCTTATGATAAAATCAAACTACATTTGGAAG 671
Query 584 CTGAGCAGGCCAAGAGTAGCAAAGAAGCCTGCAAAACCACGCAAGAGGCAGAGCACATGG 643
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 672 CTGAACAGGCCAAGAGTAGCAAAGAAGCCTGCAAAACCACGCAAGATGCAGAGCACATGG 731
Query 644 CTATTCGCTATCTCGGTTTAAGAGCATATTCAGCAGCTGACCTCAAAAAGAAGCTCATGG 703
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 732 CTATTCGCTATCTCGGTTTAAGAGCATATTCAGCAGCTGACCTGAAGAAGAAGCTCATAG 791
Query 704 GAAAGAAATATCCTCTTGAAGTCGTTGACCGAGTGATCAATGATTTCCAGATTCGAGGTT 763
|||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 792 GAAAGAAATATCCTATTGAAGTCGTTGACAAAGTGATCGATGATTTCCAGATTCGAGGTT 851
Query 764 TTATCAATGATAGCTTGTACGCGGAGTCATTCACTCGATCTAGATGGTCTTCCTTAAGTT 823
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TTGTCAATGATAGCTTGTACGCGGAGTCATTCACTCGATCTAGATGGTCTTCCTTAAGTT 911
Query 824 GGGGACCAAGGCGGATCAAGCAAGCATTGTTTAAGAAAGGCATAAGCAACAAAGACTCAG 883
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GGGGACCAAGGCGGATCAAACAAGCATTGTTTAAGAAAGGCATAAGCAACAAAGACTCAG 971
Query 884 AGACAGCCATAAAGCTGGTTTTTGAGAAACGCCAATGCAATGAAGGAGATGAAGAACCAG 943
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 972 AGACGGCCATAAAGCTGGTTTTTGAGAAACGCCAATGCAATGAAGGAGATGAAGAAGCAG 1031
Query 944 AACTAAACCACGGGCTGTCCAAGGAAGCAGTGGATCAGCTTTATGTTCAGGCATCAAAGC 1003
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1032 AACTAAACCACGGGCTGTCCAAGGAAGCAGTGGACCAGCTTTATGTCCAGGCATCAAAGC 1091
Query 1004 GGTGGCTCCAAGGCCGAGACTTGCCTATAGAAACTCGTAAAGCTAGAGTCATCCGGTGGC 1063
||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1092 GGTGGCTTCAAGGTCGAGACTTGCCTACAGAAACTCGTAAAACTAGAGTCATCCGGTGGC 1151
Query 1064 TTCAGTACCGGGGCTTCAACTGGGGTGTCGTTACCCAGCTTCTAAAGAGGTTAGAGTCTA 1123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TTCAGTACCGGGGTTTCAACTGGGGTGTCGTTACCCAGCTTCTAAAGAGGTTAGAGTCTA 1211
Query 1124 CTCATGAGTCGTGA 1137
||||||||||||||
Sbjct 1212 CTCATGAGTCGTGA 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5