BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904230
Length=3300
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13290.1 | Symbols: VCR | varicose-related | chr3:4297381-43... 4739 0.0
AT3G13300.1 | Symbols: VCS | Transducin/WD40 repeat-like superf... 3155 0.0
> AT3G13290.1 | Symbols: VCR | varicose-related | chr3:4297381-4303508
FORWARD LENGTH=4566
Length=4566
Score = 4739 bits (2566), Expect = 0.0
Identities = 3079/3318 (93%), Gaps = 69/3318 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCACCTGGTAATACTAGCCCTCACAATCCTCCCCCGTTCGATCTCAGTACT 60
||||| |||||||||||||| |||| ||||||||||||||| |||||||||||| |||||
Sbjct 149 ATGGCGTCTTCACCTGGTAACACTAACCCTCACAATCCTCCGCCGTTCGATCTCGGTACT 208
Query 61 ATCTTCAAACCCTCATCGAACCCTTATCCTCCGCCTACAGGTCCTTTTCTT-------A- 112
||||||||||||||||| |||||||||||||| ||||||||||| |||||| |
Sbjct 209 ATCTTCAAACCCTCATCCAACCCTTATCCTCCCCCTACAGGTCCGTTTCTTAACAACCAG 268
Query 113 -ACAATCAGCAACTCTACGCGCCGCCGGGTATCGCCGCCCAACCATCTCCGGTGAATCAA 171
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 269 TACAATCAGCAACTATACGCGCCGCCTGGTATCGCCGCCCAACCATCTCCGGTGAATCAA 328
Query 172 ACGCAACAGGATGCGTCTTCCTCTTCCTCCGCTACTAACTTGCAACCACAGAGGACGCTC 231
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 329 ACGCAACAGGATGTGTCTTCCTCTTCCTCCGCTACTAACTTGCAACCACAGAGAACGCTA 388
Query 232 TCTTATCCCACGCCACCTCTGAATCCCCAATCTCCCCGTGTCAATCACAATCCGGGAACG 291
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 389 TCTTATCCCACGCCACCTCTCAATCCCCAATCTCCCCGTGTCAATCACAATCCGGGAACG 448
Query 292 CACATCCTCGCTCTCCTCAACAATAACAACAACGGAGGCGCCGTGGCTAACCAGGAGCCG 351
|||||||||| || ||| | | |||||||||||| |||||||| ||||| ||| |
Sbjct 449 CACATCCTCG--CT-CTC--C--T--CAACAACGGAGGTGCCGTGGCGAACCAAGAG-C- 497
Query 352 TCGCATCAGCTCCCGGTAGTGAATCACAACGAGATCGCTCG-GTCTTTTCCCGGCGGTTC 410
|| || | | ||||||||||||||||||| | ||||||||||||||||
Sbjct 498 -CG--TC-G----C--------ATCACAACGAGATCGCTCGAG-CTTTTCCCGGCGGTTC 540
Query 411 GGGTCCTATTCGTGTTCCAAGCGGTAAAATGCCCAAGGGAAGGCGATTGGTTGGTGAACA 470
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGTCCTATTCATGTTCCAAGCGGTAAAATGCCCAAGGGAAGGCGATTGGTTGGTGAACA 600
Query 471 TGCGGTGTACGATGTGGATGTGAGATTACAAGGTGAGATTCAGCCGCAGCTGGAGGTGAC 530
||||||||| ||||| |||||||||||||| || |||||||| |||||||||||||||||
Sbjct 601 TGCGGTGTATGATGTTGATGTGAGATTACAGGGAGAGATTCAACCGCAGCTGGAGGTGAC 660
Query 531 TCCGATTACCAAATACGGGTCGGATCCTCAGCTTGTAGTCGGTAGGCAAATCGCCGTCAA 590
|||||||||||| ||||| |||||||||||||||||| ||||||||||||| || || ||
Sbjct 661 TCCGATTACCAAGTACGGCTCGGATCCTCAGCTTGTACTCGGTAGGCAAATTGCTGTGAA 720
Query 591 TAAGGTCTACATTTGCTATGGATTGAAAGGAGGAAACATACGGGTTCTCAATATCAACAC 650
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 721 TAAGGTCTACATTTGCTATGGATTGAAAGGAGGAAGCATTCGTGTTCTCAATATCAACAC 780
Query 651 AGCATTAAGGTCTCTGTTCCGTGGACATTCTCAGAGAGTGACGGACATGGCTTTCTTTGC 710
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 781 AGCATTGAGGTCTCTGTTCCGTGGCCATTCTCAGAGAGTAACGGACATGGCTTTCTTTGC 840
Query 711 CGAAGATGTTCATCTCTTGGCTAGTGTTAGTCTAGATGGAAAAGTTTTCGTGTGGAAAAT 770
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 CGAAGATGTTCATCTCTTAGCTAGTGTTAGTCTAGATGGAAAAGTTTTTGTGTGGAAAAT 900
Query 771 TTCCGAAGGATCTGAGGGAGATGATCAA-CCCGAGATAACTGGAAAGATCGTTCTTGCTC 829
|||||||||||||||||||||||| ||| ||| |||||||||||||||| ||| ||||||
Sbjct 901 TTCCGAAGGATCTGAGGGAGATGAACAATCCC-AGATAACTGGAAAGATAGTTGTTGCTC 959
Query 830 TTCAGATACTAGGAGAGGAAGACACCAAACATCCACGTGTTTGTTGGCACTGCCACAAAC 889
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 TTCAGATACTTGGAGAGGAAGACACCAAACATCCACGTGTCTGTTGGCACTGCCACAAAC 1019
Query 890 AGGAAATTTTGGTAGTTTCAATTGGTAAACATGTGCTGCGAATTGATACCACAAAAGTTG 949
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1020 AGGAAATTTTGGTAGTTTCAATTGGTAAACATGTGCTGCGAATCGATACTACAAAAGTTG 1079
Query 950 GCAGAGGTGAAGTATTCTCTGCTGAGGCACCACTCCAGTGTCCCCTTGATAAACTGATTG 1009
||||||||||||| |||||||| |||||||| |||||||||| ||||||||||| ||||
Sbjct 1080 GCAGAGGTGAAGTGTTCTCTGCCGAGGCACCTCTCCAGTGTCATCTTGATAAACTAATTG 1139
Query 1010 ATGGTGTTCAGATTGTGGGTAAGCATGATGGAGAAGTTACTGATTTGTCAATGTGCCAAT 1069
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1140 ATGGTGTTCAGATTGTGGGTAAGCATGATGGAGAAGTGACAGATTTGTCAATGTGCCAAT 1199
Query 1070 GGATGACCACGCGCCTGGTTTCTTCTTCAGTTGATGGCACGGTCAAGATATGGCAAGATC 1129
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 GGATGACCACGCGCCTGGTTTCTTCTTCAGTTGATGGCACGGTTAAGATATGGCAAGATC 1259
Query 1130 GTAAGGCACAACCACTTGTAGTTTTGAGACCTCATGATGGACATCCAGTCAATTCAGCCA 1189
||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 1260 GTAAGACACAACCACTTGTAGTATTGAGACCTCATGATGGACTTCCAGTCAATTCTGCCA 1319
Query 1190 CATTTGTAACATCCCCGGAAAGACCTGATCACATCATACTTATCACGGGGGGTCCTCTAA 1249
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATTTGTGACATCCCCGGAAAGACCTGATCACATCATACTTATCACGGGGGGTCCTCTAA 1379
Query 1250 ATCGAGAAATGAAAATTTGGGTCTCAGCTGGGGAAGAAGGGTGGCTTCTACCAGCTGATA 1309
|||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1380 ATCGAGAAATCAAGATTTGGGTCTCCGCTGGGGAAGAAGGGTGGCTTCTACCCGCTGATA 1439
Query 1310 CTGAATCATGGAGGTGTACCCAGACACTTGATTTGAAAAGTTCATCTGAGCCACGAGCTG 1369
||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1440 CTGAATCGTGGAGATGTACCCAGACACTTGATTTGAAAAGTTCAACTGAGCCACAAGCTG 1499
Query 1370 AAAAGGCATTTTTCAACCAAGTTATAGTATTGCCTGAAGCAGGCCTGCTTTTACTTGCAA 1429
|||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||
Sbjct 1500 AAAAGGCATTTTTCAACCAAGTCATAGCATTGTCTGAAGCAGGCCTGCTTTTGCTTGCAA 1559
Query 1430 ATGCGAGAAGGAACGCCATATATTCCGTGCATTTGGACTATGGCGCTTCTCCAGTTGATA 1489
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1560 ATGCGAGAAGGAACGCCATATATTCCGTGCATTTGGACTATGGCTCATCTCCAGTGGAAA 1619
Query 1490 CGCGGATGGATTACCTGTCAGAGTTTACAGTGACTATGCCTATATTGAGTTTTATTGGGA 1549
||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1620 CGCTGATGGATTACTTGTCCGAGTTTACAGTCACTATGCCTATATTGAGTTTTATTGGGA 1679
Query 1550 CAAATGATCATCCAGAAGAACCAATTGTTAAGGTTTATTGTGTTCAGACTCTAGCAATCC 1609
|||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 1680 CAAATGATCACCCAGAAGAACCATTTGTTAAAGTGTATTGTGTTCAGACTCTAGCAATCC 1739
Query 1610 AGCAGTATACAGTAGACTTATGCTTGTGCATGCCACCTCCTAGAGAGAATGTGGGTTTTG 1669
||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1740 AGCAGTATACATTAGACTTATTCTTGTGCATGCCACCTCCAAGAGAGAATGTGGGTTTTG 1799
Query 1670 AGAAGTCAGATTCTAGTGTGTCACGGGAGGCAAACCTTGTTGAAAGCACGTCAGAACCAT 1729
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1800 AGAAGTCAGATTCTACTGTGTCACGGGAGGCAAACCTTGTTGAAAGCACGTTAGAAACAT 1859
Query 1730 CTGGAATTAAGCCTACCGAATTACCTTCAGCTGATTCAGTGCCTAAACCATCTATTTTAG 1789
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1860 CTGGAATGAAGCCTACCGAATTACCTTCAGTTGGTTCAGTGCCTAAACCATCTATTTTAG 1919
Query 1790 TGAATAGATCGGAAAGTGCTGATACACTGAGTTTTCCAGCGGGTTCTGCATCAGCAGAGA 1849
||||||||||||||| |||| ||| |||||||||||||||| |||||||||| | ||
Sbjct 1920 TGAATAGATCGGAAAATGCTAATATGTTGAGTTTTCCAGCGGGCCCTGCATCAGCGGGGA 1979
Query 1850 TCACACCACCAGCAATTGTTCCACCCAACGGTGATCCTAAAACTTCTGGGATGCCTTCTG 1909
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1980 TCACACCACCAGCAATTGTTCCACCCAACGGTGAGCCTAAAACTTCTGGGATGCCTTCTG 2039
Query 1910 AGACCAGTGATACAGGTTCTGCGTATGCTCCTTCACCTCAACTGTC-TCTAAGTCCCAGA 1968
||||||||||| || ||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 2040 AGACCAGTGATGTAGATTCTGCGTATGCTCCTTCACCTCAACT-TCCTCTAAGCCCCAGA 2098
Query 1969 CTATCAAGTAAACTTTCTGGCTATCACACTCCTGTAGAAGCAATTGAGCAAGTACTACCA 2028
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2099 CTATCAAGTAAACTTTCTGGCTATCACACTCCTGTAGAAGCGTTTGAGCAAGTGCTACCA 2158
Query 2029 CGTCATGAGCTTGGTGGGAAAACAAGTTCTGCTGATTATTCTTATGAT-AGGCAAATTGA 2087
| |||| |||||||||| |||||||||||||||||||||| ||||| | ||||||| |||
Sbjct 2159 CATCATAAGCTTGGTGGCAAAACAAGTTCTGCTGATTATTTTTATG-TGAGGCAAACTGA 2217
Query 2088 TGATGTTGGAGAAAGAAATTTGGATGTGTCTTCTGTTGAGGAAAACTGTAGAAGAAAGGA 2147
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2218 TGATGTTGGAGGAAGAAATTTGGATGTGTCTTCTGTCGAGGAAAACTGTAGAAGCAAGGA 2277
Query 2148 CACGAATGTTACACCTGATGATGATTTGTCTGGGATTCAAAGCCCGTCAGCTTTTTTCAA 2207
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2278 CACGAATGTTACACCTGATGATGATGTGTCTGGGATTCGAAGCCCGTCAGCTTTTTTCAA 2337
Query 2208 ACACCCCACTCATCTCGTAACTCCTTCAGAGATATTGATGGGCGTTTCGTCCACTGAAGC 2267
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2338 ACAGCCCACTCATCTCGTAACTCCTTCAGAGATATTGATGGGCGTTTCTTCCACTGAAGC 2397
Query 2268 CTCCATTGCTACTGAAGACAAGAGAGATAGAGATGCAAATATTCAGGATGTGAATAATGA 2327
||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 2398 CTCCATTACTACTGAAGACAAGAGGGATAGAGATGCAAATATTGAGGAAGTGAATAATGA 2457
Query 2328 TGCAAGAGGCTTAGAAGTTGAGGTGAAAGAAGTAGGCGAAGCACGGACTTCGCAGAATGG 2387
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 2458 TGCAAGAGGCTTAGAAGTTGAGTTGAAAGAAGTAGGCGAAGCACAGACTTCGCAGAATGG 2517
Query 2388 TGAAATCAACTATCATGAAACAACTGAGAATCACACTTCAGAAAGTAGAGAAAATATCTT 2447
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 TGAAATTAACTATCACGAAACAACTGAGAATCACACTTCAGAAAGTAGAGAAAATATCTT 2577
Query 2448 CTGCTCACAGGTTTCAAATCTCAGCACTGAGATGGCAAGAGACCGTCATCCTATTACAGA 2507
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 CTGCTCACAGGCTTCAAATCTCAGCACTGAGATGGCAAGAGACCGTCATCCTATTACAGA 2637
Query 2508 GG-ACACTGTCATTCCAGGGGACTCTATGACTTATGTACAACCTTTTCAATCTGGGGATG 2566
|| | | || |||||| ||||| |||||| |||||| ||||||||| ||| |||| ||||
Sbjct 2638 GGGA-AGTGCCATTCCTGGGGATTCTATGGCTTATGGACAACCTTTACAAGCTGGAGATG 2696
Query 2567 AAAGGGGTCTTGACTCAAGAGATGTGTCTGCAAAGCTTCCTGAGTCGGGTTCATCTAGTG 2626
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2697 AAAGGGGTCTTGACTCAAGAGATGTCTCTGCAAAGCTTCCTGAGTCGGGTTCATCTAGTG 2756
Query 2627 GGCCTCTACAGTCGCCAGCTACGACTAGCAAAGGGAAGAAGCAGAAGGCCAAAAATTCAC 2686
|| | || || |||||| | ||||||||| |||||||||||||| ||||||||||
Sbjct 2757 GG--T-TA--GT----AGCTACAAATAGCAAAGGAAAGAAGCAGAAGGCGAAAAATTCAC 2807
Query 2687 AGGGCCCCGGTTTGTCATCTACATCCTCAAATGTTGCTAATCTGGCTGACTCCTTCAATG 2746
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2808 AGGGTCCTGGGTTGTCATCTACATCCTCAAATGTTGCTAATCTGGCTGACTCCTTCAATG 2867
Query 2747 ATCAAAGTCA---T------C--CC-ATGACAGATTCACTTCCTCAGTTGTTAGCAATGC 2794
| |||||||| | | || ||| |||||| ||||||||||||||||||| |||
Sbjct 2868 AGCAAAGTCAGAGTTTAAATCATCCCATGGCAGATTTACTTCCTCAGTTGTTAGCATTGC 2927
Query 2795 AAGAAACAATGAATCAGATAATGGCTTCGCAGAAGGAGATGCAGAGACAACTATCAAATG 2854
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2928 AAGAAACAATGACTCAGGTAATGGCTTCGCAGAAGGAGATGCAGAGACAACTATCAAATG 2987
Query 2855 CTGTCACTGGCCCTATCGTAAAAGAAGGTAAAAAACTAGAAGTGGCCTTAGGAAGAATGA 2914
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2988 CTGTCACTGGCCCTATCGTAAAAGAAGGTAAAAAACTAGAAGTTGCCTTAGGGAGAATGA 3047
Query 2915 TTGAGAAATCCAGCAAGTCAAATGCTGATGCTCTATGGGCCCGCTTCCAAGAGGAGGCTG 2974
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3048 TTGAGAAATCCAGCAAGTCAAATGCTGATGCTCTATGGGCCCACTTCCAAGAGGAGGCTG 3107
Query 2975 TTAAGAATGAAAAGGCATTACGTGACCATGGCCAGCAAATTGTGAATGCAACGACAAACT 3034
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 3108 TTAAGAATGAAAAGGCATTACGTGACCATGGCCAGCAAATTATGAATGAAACGACAAACT 3167
Query 3035 TCATGAGCAAGGAGTTAAATGCCATGTTTGAGAAAACGATGAAAAAGGAATTTGCTAT-A 3093
||| ||| || |||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 3168 TCACGAGTAAAGAGTTAAATGCCATGTTTGAGAAAACGATGAAGAAGGAATTTGCT-TCA 3226
Query 3094 GTTGGTCCAACCCTAGCACGTGCAGTAACTCCAGTTATCGAAAAAACTGTATCTTCTGCA 3153
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 3227 GTTGGTCCAACCCTAGCACGTGTAGTAACTCCAGTTATTGAAAAAACTGTATCTTCTGCA 3286
Query 3154 ATCACAGAGTCCTTCCAGAGAGGAATTGGCGACAAAGCAGTCAGTCAGCTTGAAAAATCT 3213
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3287 ATCACAGAGTCCTTCCAGAGAGGAATTGGTGACAAAGCAGTCAATCAGCTTGAAAAATCT 3346
Query 3214 GTTAATTCAAAGCTTGAAACAACCATAGCCAGGCAAATTCAAGCCCAATTTCAGACATCT 3273
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 3347 GTTAATTCAAAGCTTGAAACAACCGTAGCCAGGCAGATTCAAGCCCAATTTCAGACATCT 3406
Query 3274 GGCAGACAAGCCCTCCAG 3291
|||||||||| ||| |||
Sbjct 3407 GGCAGACAAGTCCTGCAG 3424
> AT3G13300.1 | Symbols: VCS | Transducin/WD40 repeat-like superfamily
protein | chr3:4303874-4310213 FORWARD LENGTH=4510
Length=4510
Score = 3155 bits (1708), Expect = 0.0
Identities = 2272/2543 (89%), Gaps = 43/2543 (2%)
Strand=Plus/Plus
Query 83 CTTATCCTCCGCCTACAGGTCCTTTTCTT---AA-C---A--ATCAGCAACTCTACGCGC 133
||||||||||||||||||||||||||||| || | | ||||||| | |||||| |
Sbjct 315 CTTATCCTCCGCCTACAGGTCCTTTTCTTCACAACCAGTACGATCAGCAGCACTACGCTC 374
Query 134 CGCCGGGTATCGCCGCCCAACCATCTCCGGTGAATCAAAC-GCAACAGGATGCGTCTTCC 192
|||| |||||| |||| |||||||||||||||| || | | ||||||||||| |||||||
Sbjct 375 CGCCTGGTATCTCCGCTCAACCATCTCCGGTGACTC-AGCAGCAACAGGATGTGTCTTCC 433
Query 193 TCTTCCTCCGCTACTAACTTGCAACCACAGAGGACGCTCTCTTATCCCACGCCACCTCTG 252
|||||| |||| ||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 434 TCTTCCGCCGCGACTAACTTGCATCCTCAGAGAACGCTGTCTTATCCCACGCCACCTCTC 493
Query 253 AATCCCCAATCTCCCCGTGT-CAATCACAATCCGGGAACGCACATCCTCGCTCTCCTCAA 311
|||| ||||| |||||| | |||||||||||| || |||||||||||||||||||| ||
Sbjct 494 AATCTACAATCCCCCCGT-TCCAATCACAATCCCGGTACGCACATCCTCGCTCTCCTTAA 552
Query 312 CAATAACAACAACGGAGGCGCCGTGGCTAACCAGGAGCCGTCGCATCAGCTCCCGGTAGT 371
||||| ||||||||||| | ||||||||||||| |||||||||||||||||||| |||||
Sbjct 553 CAATACCAACAACGGAGCCCCCGTGGCTAACCAAGAGCCGTCGCATCAGCTCCCAGTAGT 612
Query 372 GAATCACAACGAGATCGCTCGGTCTTTTCCCGGCGGTTCGGGTCCTATTCGTGTTCCAAG 431
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 613 CAATCACAACGAGATCGCTCGCTCTTTTCCCGGCGGTTCAGGTCCTATTCGTGTACCGAG 672
Query 432 CGGTAAAATGCCCAAGGGAAGGCGATTGGTTGGTGAACATGCGGTGTACGATGTGGATGT 491
| ||||| |||||||||||||||||||| |||||||||| || ||||||||||| |||||
Sbjct 673 CTGTAAATTGCCCAAGGGAAGGCGATTGATTGGTGAACACGCTGTGTACGATGTTGATGT 732
Query 492 GAGATTACAAGGTGAGATTCAGCCGCAGCTGGAGGTGACTCCGATTACCAAATACGGGTC 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GAGATTACAAGGTGAGATTCAGCCGCAGCTGGAGGTGACTCCGATTACCAAATACGGGTC 792
Query 552 GGATCCTCAGCTTGTAGTCGGTAGGCAAATCGCCGTCAATAAGGTCTACATTTGCTATGG 611
|||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 793 GGATCCTCAGCTCGTAGTGGGTAGGCAAATCGCCGTGAATAAGGTTTACATTTGCTATGG 852
Query 612 ATTGAAAGGAGGAAACAT-ACGGGTTCTCAATATCAACACAGCATTAAGGTCTCTGTTCC 670
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 853 ATTGAAAGGAGGAAACATTA-GGGTTCTCAATATCAACACAGCATTGAGGTCTCTGTTCC 911
Query 671 GTGGACATTCTCAGAGAGTGACGGACATGGCTTTCTTTGCCGAAGATGTTCATCTCTTGG 730
|||| ||||| |||||||||||||| ||||||||||||||||| |||||| || | ||||
Sbjct 912 GTGGCCATTCACAGAGAGTGACGGATATGGCTTTCTTTGCCGAGGATGTTGATATGTTGG 971
Query 731 CTAGTGTTAGTCTAGATGGAAAAGTTTTCGTGTGGAAAATTTCCGAAGGATCTGAGGGAG 790
| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 972 CCAGTGTTAGCCTAGATGGAAAAGTTTTTGTGTGGAAAATTTCTGAAGGGTCTGAGGGAG 1031
Query 791 ATGATCAACCCGAGATAACTGGAAAGATCGTTCTTGCTCTTCAGATACTAGGAGAGGAAG 850
| ||||| ||| | |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1032 AGGATCAGCCCCAAATAACTGGGAAGATAGTACTTGCTCTTCAGATACTAGGAGAGGAAG 1091
Query 851 ACACCAAACATCCACGTGTTTGTTGGCACTGCCACAAACAGGAAATTTTGGTAGTTTCAA 910
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ACACCAAACATCCACGCGTTTGTTGGCACTGCCACAAACAGGAAATTTTGGTAGTTTCAA 1151
Query 911 TTGGTAAACATGTGCTGCGAATTGATACCACAAAAGTTGGCAGAGGTGAAGTATTCTCTG 970
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1152 TTGGTAAACATGTACTGCGTATTGATACTACAAAAGTTGGCAGAGGTGAAGTATTCTCTG 1211
Query 971 CTGAGGCACCACTCCAGTGTCCCCTTGATAAACTGATTGATGGTGTTCAGATTGTGGGTA 1030
||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1212 CTGAGGCTCCTCTCCAGTGTCCCCTTGATAAGCTGATCGATGGTGTTCAGATTGTTGGTA 1271
Query 1031 AGCATGATGGAGAAGTTACTGATTTGTCAATGTGCCAATGGATGACCACGCGCCTGGTTT 1090
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1272 AGCATGATGGAGAAGTGACAGATTTGTCAATGTGCCAATGGATGACCACGCGTCTGGTTT 1331
Query 1091 CTTCTTCAGTTGATGGCACGGTCAAGATATGGCAAGATCGTAAGGCACAACCACTTGTAG 1150
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1332 CTTCTTCAGTTGATGGCACGATTAAGATATGGCAAGATCGTAAGGCACAACCACTTGTAG 1391
Query 1151 TTTTGAGACCTCATGATGGACATCCAGTCAATTCAGCCACATTTGTAACATCCCCGGAAA 1210
||||||| |||||||||||||||||||||| ||||||||| ||||| ||||| || || |
Sbjct 1392 TTTTGAGGCCTCATGATGGACATCCAGTCAGTTCAGCCACGTTTGTGACATCTCCTGAGA 1451
Query 1211 GACCTGATCACATCATACTTATCACGGGGGGTCCTCTAAATCGAGAAATGAAAATTTGGG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1452 GACCTGATCACATCATACTTATCACGGGGGGTCCTCTAAATCGAGAAATGAAAATCTGGG 1511
Query 1271 TCTCAGCTGGGGAAGAAGGGTGGCTTCTACCAGCTGATACTGAATCATGGAGGTGTACCC 1330
|||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1512 TCTCTGCTGGGGAAGAAGGGTGGCTTTTACCAGCTGATGCTGAATCATGGAGGTGTACCC 1571
Query 1331 AGACACTTGATTTGAAAAGTTCATCTGAGCCACGAGCTGAAAAGGCATTTTTCAACCAAG 1390
|||| ||||| |||||||||||| | ||||||||||||||| |||||||||| |||||||
Sbjct 1572 AGACTCTTGACTTGAAAAGTTCAACCGAGCCACGAGCTGAAGAGGCATTTTTTAACCAAG 1631
Query 1391 TTATAGTATTGCCTGAAGCAGGCCTGCTTTTACTTGCAAATGCGAGAAGGAACGCCATAT 1450
| |||| ||| ||||||||||| ||||||||||||||||||| | |||||||||| |||
Sbjct 1632 TCATAGCATTATCTGAAGCAGGCTTGCTTTTACTTGCAAATGCAAAAAGGAACGCCTTAT 1691
Query 1451 ATTCCGTGCATTTGGACTATGGCGCTTCTCCAGTTGATACGCGGATGGATTACCTGTCAG 1510
|| | ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct 1692 ATGCTGTGCATTTGGACTATGGTTCTTCTCCAGTTGGTACGCGGATGGATTACCTATCAG 1751
Query 1511 AGTTTACAGTGACTATGCCTATATTGAGTTTTATTGGGACAAATGATCATCCAGAAGAAC 1570
|||||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct 1752 AGTTTACAGTCACTATGCCCATATTGAGTTTCATTGGGACAAATGATCCTCCAGAAGAAC 1811
Query 1571 CAATTGTTAAGGTTTATTGTGTTCAGACTCTAGCAATCCAGCAGTATACAGTAGACTTAT 1630
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1812 CCATTGTTAAGGTTTATTGTGTTCAGACTCTAGCAATCCAGCAGTATACATTAGACTTGT 1871
Query 1631 GCTTGTGCATGCCACCTCCTAGAGAGAATGTGGGTTTTGAGAAGTCAGATTCTAGTGTGT 1690
|||| ||| ||||||| |||| ||| ||| ||||||| |||||||||||||||||||| |
Sbjct 1872 GCTTATGCTTGCCACCACCTATAGAAAATATGGGTTTGGAGAAGTCAGATTCTAGTGTAT 1931
Query 1691 CACGGGAGGCAAACCTTGTTGAAAGCACGTCAGAACCATCTGGAATTAAGCCTACCGAAT 1750
|||| |||||||| ||||||||| ||| |||||||||||||||| |||| ||||| || |
Sbjct 1932 CACGAGAGGCAAATCTTGTTGAAGGCATGTCAGAACCATCTGGACTTAAACCTACTGACT 1991
Query 1751 TACCTTCAGCTGATTCAGTGCCTAAACCATCTATTTTAGTGAATAGATCGGAAAGTGCTG 1810
||||||||| |||||||||||| ||||| || ||| ||||||||||||| |||||||||
Sbjct 1992 TACCTTCAGTTGATTCAGTGCCAAAACCTTCGATTATAGTGAATAGATCAGAAAGTGCTA 2051
Query 1811 ATACACT-GAGTTTTCCAGCGGGTTCTGCATCAGCAGAGATCACACCACCAGCAATTGTT 1869
||| | | |||||||||| | | | | | ||| | |||||| | |||||||||
Sbjct 2052 ATA-AGTTGAGTTTTCCATCAG---CGG-A--AGCC-ACATCACA--A---GCAATTGTT 2098
Query 1870 CCACCCAACGGTGATCCTAAAACTTCTGGGATGCCTTCTGAGACCAGTGATACAGGTTCT 1929
|||||||||||||| |||||||||||||| |||| ||| | ||||||| | ||||||||
Sbjct 2099 CCACCCAACGGTGAACCTAAAACTTCTGGCCTGCCATCTCAAACCAGTGGTGCAGGTTCT 2158
Query 1930 GCGTATGCTCCTTCACCTCAACTGTC-TCTAAGTCCCAGACTATCAAGTAAACTTTCTGG 1988
||||||||| ||| ||| ||||| || ||| |||||||||||||||||||||||||||||
Sbjct 2159 GCGTATGCTACTTTACCCCAACT-TCCTCTCAGTCCCAGACTATCAAGTAAACTTTCTGG 2217
Query 1989 CTATCACACTCCTGTAGAAGCAATTGAGCAAGTACTACCACGTCATGAGCTTGGTGGGAA 2048
|||||||||||||||||| || ||||||| |||| |||| | ||||||||||||||| ||
Sbjct 2218 CTATCACACTCCTGTAGAGGCGATTGAGCCAGTAATACCTCATCATGAGCTTGGTGGCAA 2277
Query 2049 AACAAGTTCTGCTGATTATTCT-TATGATAGGCAAATTGATGATGTTGGAGAAAGAAATT 2107
|||| |||||||||||| ||| | |||||||||||| |||| |||||||||||||||||
Sbjct 2278 AACACCTTCTGCTGATTACTCTGT-TGATAGGCAAATGGATGCTGTTGGAGAAAGAAATT 2336
Query 2108 TGGATGTGTCTTCTGTTGAGGAAAACTGTAGAAGAAAGGACACGAATGTTACACCTGATG 2167
|||| ||||| || || || |||| || ||||| |||||| | |||||||| |||||||
Sbjct 2337 TGGACGTGTCATCCGTAGAAGAAATCTCAAGAAGCAAGGACTCAAATGTTACGCCTGATG 2396
Query 2168 ATGATTTGTCTGGGATTCAAAGCCCGTCAGCTTTTTTCAAACACCCCACTCATCTCGTAA 2227
||||| |||||||||| | |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2397 ATGATGTGTCTGGGATGCGAAGCCCATCAGCTTTTTTCAAACACCCCACTCATCTTGTAA 2456
Query 2228 CTCCTTCAGAGATATTGATGGGCGTTTCGTCCACTGAAGCCTCCATTGCTACTGAAGACA 2287
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct 2457 CTCCTTCAGAGATATTGATGGGCGTTTCTTCCGCTGAAGCCTCCATTACTACTGAAGACA 2516
Query 2288 AGAGAGATAGAGATGCAAATATTCAGGATGTGAATAATGATGCAAGAGGCTTAGAAGTTG 2347
||||||||| ||||||||||||||||| |||||||||||| |||||| | ||||| |
Sbjct 2517 GGAGAGATAGGGATGCAAATATTCAGGACGTGAATAATGATCCAAGAGACACCGAAGTAG 2576
Query 2348 AGGTGAAAGAAGTAGGCGAAGCACGGACTTCGCAGAATGGTGAAATCAACT-ATCATGAA 2406
||||||||||| || | |||||| || | | ||||||||||||||||| | |||||||
Sbjct 2577 AGGTGAAAGAAATAAGTGAAGCAAGGTCAACACAGAATGGTGAAATCAA-TGATCATGAC 2635
Query 2407 -ACAACTGAGAATCACACTTCAGAAAGTAGAGAAAATA-TCTTCTGCTCACAGGTTTCAA 2464
| |||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 2636 GA-AACTGAGAATTGCACTTCAGAAAATAGAGAAAA-AGTCTTCTGCTCACAGGTTTCAA 2693
Query 2465 ATCTCAGCACTGAGATGGCAAGAGACCGTCATCCTATTACAGAGG-ACACTGTCATTCCA 2523
|||||||||||||||||||||||||| || |||||| ||| |||| | ||| ||||||||
Sbjct 2694 ATCTCAGCACTGAGATGGCAAGAGACTGTTATCCTAGTACTGAGGGA-ACTTTCATTCCA 2752
Query 2524 GGGGACTCTATGACTTATGTACAACCTTTTCAAT-CTGGGGATGAAAGGGGTCTTGACTC 2582
||||| |||| | | |||| ||||||| | || |||| |||||||| ||| |||||||
Sbjct 2753 GGGGAATCTAAGGCATATGGACAACCTATA-AAGGCTGGAGATGAAAGTGGTGTTGACTC 2811
Query 2583 AAGAGATGTGTCTGCAAAGCTTC 2605
|||| || | ||||||||||||
Sbjct 2812 GAGAGGTGGGCCTGCAAAGCTTC 2834
Score = 876 bits (474), Expect = 0.0
Identities = 596/652 (91%), Gaps = 20/652 (3%)
Strand=Plus/Plus
Query 2656 AAAGGGAAGAAGCAGAAGGCCAAAAATTCACAGGGCCCCGGTTTGTCATCTACATCCTCA 2715
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2837 AAAGGAAAGAAGCAGAAGGCCAAAAATTCACAGGGTCCCGGTTTGTCATCTACATCCTCA 2896
Query 2716 AATGTTGCTAATCTGGCTGACTCCTTCAAT--G---A-TC--A----AAGTCATCCCATG 2763
|||||||||||||||||||||||||||||| | | || | |||||||||||||
Sbjct 2897 AATGTTGCTAATCTGGCTGACTCCTTCAATGAGCAAAGTCAGAGTTTAAGTCATCCCATG 2956
Query 2764 ACAGATTCACTTCCTCAGTTGTTAGCAATGCAAGAAACAATGAATCAGATAATGGCTTCG 2823
||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 2957 ACAGATTTACTTCCTCAGTTGTTAGCAATGCAAGAAACGATGAATCAGGTGATGGCTTCG 3016
Query 2824 CAGAAGGAGATGCAGAGACAACTATCAAATGCTGTCACTGGCCCTATCGTAAAAGAAGGT 2883
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 3017 CAGAAGGAGATGCAGAGACAACTATCAAATGCTGCCACTGGCCCTATCGGAAAAGAAAGT 3076
Query 2884 AAAAAACTAGAAGTGGCCTTAGGAAGAATGATTGAGAAATCCAGCAAGTCAAATGCTGAT 2943
|||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3077 AAAAGACTAGAAGTTGCGTTAGGGAGAATGATTGAGAAATCCAGCAAGTCAAATGCTGAT 3136
Query 2944 GCTCTATGGGCCCGCTTCCAAGAGGAGGCTGTTAAGAATGAAAAGGCATTACGTGACCAT 3003
||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 3137 GCTCTATGGGCCCGCATCCAGGAGGAGACTGTTAAGAATGAAAAGGCATTACGTGACCAT 3196
Query 3004 GGCCAGCAAATTGTGAATGCAACGACAAACTTCATGAGCAAGGAGTTAAATGCCATGTTT 3063
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3197 GCCCAGCAAATTGTGAATGCAACGACAAACTTCATGAGCAAGGAGTTAAATGCCATGTTT 3256
Query 3064 GAGAAAACGATGAA-AAAGGAATTTGCTATAGTTGGTCCAACCCTAGCACGTGCAGTAAC 3122
||||||||||| || |||| |||| ||| | |||||||| ||||||||||| |||||
Sbjct 3257 GAGAAAACGATAAAGAAAG-AATTGGCTGCAATTGGTCCAGCCCTAGCACGTTCAGTAG- 3314
Query 3123 T-CCAGTTATCGAAAAAACTGTATCTTCTGCAATCACAGAGTCCTTCCAGAGAGGAATTG 3181
| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 3315 TACCAGTTATTGAAAAAACTGTATCTTCTGCAATCACAGAGTCCTTTCAGAGAGGAATAG 3374
Query 3182 GCGACAAAGCAGTCAGTCAGCTTGAAAAATCTGTTAAT-TCAAAGCTTGAAACAACCATA 3240
| ||||||||||| | ||||||||| |||||||||||| | |||||||||| ||||| ||
Sbjct 3375 GTGACAAAGCAGTTAATCAGCTTGACAAATCTGTTAATAT-AAAGCTTGAAGCAACCGTA 3433
Query 3241 GCCAGGCAAATTCAAGCCCAATTTCAGACATCTGGCA-GACAAGCCCTCCAG 3291
|| |||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct 3434 GCTAGGCAAATTCAAGCCCAATTTCAGACCTCTGGCAAG-CAAGCCCTCCAG 3484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164196404439
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5