BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904239
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13360.1 | Symbols: WIP3 | WPP domain interacting protein 3 ... 2163 0.0
> AT3G13360.1 | Symbols: WIP3 | WPP domain interacting protein
3 | chr3:4338359-4340412 REVERSE LENGTH=1646
Length=1646
Score = 2163 bits (1171), Expect = 0.0
Identities = 1315/1385 (95%), Gaps = 7/1385 (1%)
Strand=Plus/Plus
Query 1 ATGAATGAGTCAGTCCCTGAATCTGTGGAAGACAATGGTAATTCAGTCCCTGCAAATGGA 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 154 ATGAATGAGTCAGTCCCTGATTCTGTGGAAGACAACGGTAATTCAGTCCCTGCAAATGGA 213
Query 61 TTATTAGTATTGCCTGATATTGATCATGAGGAAGGAGGTGTTGGATCACCTCAACGATCG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TTATTAGTATTGCCTGATAATGATCATGAGGAAGGAGGTGTTGGATCACCTCAACGATCG 273
Query 121 AACAGCGTTGGATCTCCGGGTGGATCAGTACATTCTACGAGGAAAGGTTTTGGTTTGAAG 180
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 AACAGCGTTGAATCTCCTGGTGGATCAGTACATTCTACGAGGAAAGGTTTTGGTTTGAAG 333
Query 181 AAATGGAGACGGATCAAAAGAGATGGTCCTGTGAGAGACGAGGCTGCTCCTGTTGATGAT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 334 AAATGGAGACGGATCAAAAGAGATGGTCCTGTGAGAGATGAGGCTGCTCCTGTTGATGAT 393
Query 241 GGTAGTAAGTTGCTGAAGCGTGGATTGGCTGGTTTGGTGAATCCTCCTTCTAAACATGTA 300
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GGTAGTAAGTTACTGAAACGTGGATTGGCTGGTTTGGTGAATCCTCCTTCTAAACATGTA 453
Query 301 GACTTGTCTTCAGTCGAAGCAAGACAGAGTAGTGAAGGCTCTGTTGGGTCTGTGAATATG 360
|| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 454 GAATTTTCTTCAGTTGAAGCAAGGCAGAGTAGTGAAGGCTCTGTTGGGTCAGTGAATATG 513
Query 361 GTGCATCATCCAGGAGTAGCCAACGGGTTTAATCCCGATATAGGTTGTATGTTTGCTGTT 420
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 514 GTGCATCATCCAGGGGTAGCCAACGGGTTTAGTCCCGATATAGGTTGTATGTTTGCTGTT 573
Query 421 GGCCAAGCGTTTGAGAAAAGTGAAGAGCATAGTGGTAATACCATAGGTGCAAAGAATGTA 480
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 574 GGGCAAGCGTTTGAGAAAAGTGAAGAGCATAGTGGTAATACCATAGGTGGAAAGAATGTA 633
Query 481 GTAGGAGGGAAGATTGTTTCAGGTAGCCAAGAGAAACTCTGGAGTGATACCATCAAGAAG 540
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 634 GTAGGAGGGAAGGTTGTTTCAGGTAGCCAAGAGAAACTCTGGAGTGATACCATCAAGAGG 693
Query 541 GCTAGCGAGGAGCGGGGGAATAGT-GAGAAGGAGAAGCCTTGTTCCAGCTTGGATTCCGA 599
|||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 694 GCTAGCGAAGAGCGGGGGGATA-TCGAGAAGGAGAAGCCTTGTTCCAGCTTGGATTCCGA 752
Query 600 CTTGAGAAGTAGCGATTTTGTGTTTTCGAGTGGCTCGGTTTCTGTTGCTAACCATGGAGA 659
|||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 753 CTTGAGAAGTAGTGATTTTGTGTTTTCGACTGGCTCGGTTTCTGTTGGTAACCATGGAGA 812
Query 660 GAAAGATGAGAGATTGACGATGAATTATATTGGGGGATTTAGCAATGAAGGTCAAGTTCA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 813 GAAAGATGAGAGATTGACGATGAATTATATTGGGGGATTTAGCAATGAAGGTCAAGTTAA 872
Query 720 GGAGGAAGTTCAAACATATAGCAGAAGCAAAAACGGGTATAAAGAAGACGATGGAGATGA 779
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 873 GGAGGAAGTTCAAACATATAGCAGAAGCGAAAACGGGAATAAAGAAGACGATGGAGA-GA 931
Query 780 GAGTAAGAAAAACAATAATCATTGGGCAGATAAAGATC-CACTTGCAGATTCTATCAGAA 838
| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 932 G--TAAGAAAAACAACAATCATTGGGCAGATAAAGA-CGCACTTGCAGATTCTATCAGAA 988
Query 839 GCTTTGCAGCTCTGCAGGAAGCTCTTTGGAAAGAGGTTCAAAGTTTCCAGGAGCTGGGTA 898
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 989 GCTTTGCAGTTCTGCAGGAAGTTCTTTGGAAAGAGGTTCAAAGTTTCCAGGAGCTAGGTA 1048
Query 899 ATGAATCTATACTACTACATTCAAACACCGATGAAATGAGTGCAGACCAACCAAGTCATG 958
| |||||| ||||||||||||| |||||||||||| ||||| ||||||| |||||||||
Sbjct 1049 AGGAATCTGTACTACTACATTCGAACACCGATGAATTGAGTTCAGACCAGCCAAGTCATC 1108
Query 959 AAAATTGTAGAGAAGATAACTCAACATCCTCAGGATCAAAGGCACTGATCTTGAAGGAGA 1018
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 AAAATTGTAAAGAAGATAACTCAACATCCTCAGGATCAAAGGCACTGATCTTGAAGGAGA 1168
Query 1019 AGGTAAAACATCTGGAACACAAACTCGAGGAAGCGAGAACTGCGCTCGAGGCAAAGGAAG 1078
||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1169 AGGTAAAACTTCTGGAACACAAACTCGAGGAAGCGAGAGCTGCTCTCGAGGCAAAGGAAG 1228
Query 1079 CCAGGATCCATGAACTCGAAAACTTAAAGATTGAATCTGAACTCGAAGGCATTTTCCAGA 1138
| |||||||| ||||||||||||| |||||||||||||||||| ||| |||| |||||||
Sbjct 1229 CTAGGATCCAAGAACTCGAAAACTCAAAGATTGAATCTGAACTTGAATGCATCTTCCAGA 1288
Query 1139 GAAAGATCGAAACTGAAATCGAGCATTTGATGCTCACAAGAACTCTGAGTTCACTACAAG 1198
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1289 GAAAGATTGAAACTGAAATCGAACATTTGATGCTCACAAGATCTCTGAGTTCACTACAAG 1348
Query 1199 CACTCCAAGAACCTAAGAAGTTACATTCTCTGACAGAAGATCTTGAATCAAACCGTGGAG 1258
|||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1349 TACTCCAAGAAACTAAGAAGTTACATTCTCTGAAAGAAGATCCTGTATCAAACCGTGGAA 1408
Query 1259 ACATCTTTGGAAAAACATGTAAGCTCGGTTTCTATATCTTGACACAATTGATCTTGCTCG 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 ACATCTTAGGAAAAACATGTAAGCTCGGTTTCTATATCTTGACACAATTGATCTTGCTCG 1468
Query 1319 TTTCTATACTTCGGCTTCTAGTCCTACAATTCTCTCCTGATTCACGATTAGTTATACCAA 1378
| |||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 1469 TCTCTATACTTCGGTTTCTCGTCCTACAATTCTCTCCTGCTTCACGATTAGTAATACCAA 1528
Query 1379 CTTGA 1383
|||||
Sbjct 1529 CTTGA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5