BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904270 Length=564 Score E Sequences producing significant alignments: (Bits) Value AT3G13630.1 | Symbols: | unknown protein; Has 21 Blast hits to... 688 0.0 > AT3G13630.1 | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4456954-4458134 FORWARD LENGTH=811 Length=811 Score = 688 bits (372), Expect = 0.0 Identities = 526/593 (89%), Gaps = 40/593 (7%) Strand=Plus/Plus Query 1 ATGGAAGGTGGCGCTGAGGATCTGAGTGTTGAGATTGTTGGTCTACTGGAAACGGCTTAT 60 |||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||| Sbjct 85 ATGGAAGGTGGCGCTGAGGATCTGAGTGCTGAGATTGTTGGTCTATTAGAAACTGCTTAT 144 Query 61 GAGAGGCGTGAGC-CGAT-GACGAAAATCCGTAAACAGCTTGAAAGAATGTCAGAGACTT 118 |||||| |||| | |||| ||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 145 GAGAGGAGTGA-CTCGATGGAC-AAAATCCGTAATCAGCTTGAAAGAATGTCGGAGACTT 202 Query 119 TGGCCGAAGCTGTGCCTCACTCAAAATATGCGGAGGCCATTGTGAAGGGAATGCTTCTTG 178 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 203 TGGCCGAATCTGTGCCTCACTCAAAATACGCGGAGGCCATTGTGAAGGGAATGCTTCTTG 262 Query 179 CTGTTCAAAGACGTGCAAACCT-AA--A----C---GCATCCAAGAAACCATCGATCAGG 228 |||||| |||||||| |||||| || | | |||||||||||||||||||| || Sbjct 263 CTGTTCGAAGACGTGTAAACCTAAACGAGCGCCTTAGCATCCAAGAAACCATCGATTTGG 322 Query 229 TTTTTGATACATATATATGGTCCTATCCTTATTCCATATGCCACCAGC-A-A--A-AC-T 282 |||||||| | |||||||||||||||||||||||||||||||||| | | | || Sbjct 323 TTTTTGATGC----ATATGGTCCTATCCTTATTCCATATGCCACCAGCAACACTACACAA 378 Query 283 A-CC----C--A-AGTCTGTGGAGAAGATATATGTCTTGAACCTCAGTCACCATTTTT-C 333 | || | | |||||||||||||| ||||||||||||||||||||||| ||||| | Sbjct 379 ATCCAAATCATAGAGTCTGTGGAGAAG--ATATGTCTTGAACCTCAGTCACC-TTTTTCC 435 Query 334 CCCGTTTTTGGTGA-TATAATCCAGACCTTGTCACGCCATTGTGTAAACGTGGAAGCCAT 392 |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 436 CCCGTTTTTGGT-ATTATAATCCAGACCTTGTCACGCCATTGTGTAAATGTGGAAGCCAT 494 Query 393 TGTTGATTGGGAAGAGCGTAGGAAAGAAGCAAGAGAGAGA-GGAATTCTGTCTCCACAAG 451 ||||||||||||| |||||||||||| |||||||||| || |||| |||||||| ||||| Sbjct 495 TGTTGATTGGGAAAAGCGTAGGAAAGCAGCAAGAGAG-GAAGGAACTCTGTCTCAACAAG 553 Query 452 AGATGAATCTTCTGAGGAATATGGAAAATACCCAAAGTGGTCCTACCGGTGGCATCCTTG 511 |||||| ||||||| ||||||||||| ||||||||| |||||| |||||||||||||||| Sbjct 554 AGATGACTCTTCTGTGGAATATGGAACATACCCAAATTGGTCCCACCGGTGGCATCCTTG 613 Query 512 AAGGATTTGAGATTGGAAAAGGAAGCCAGGACGCTCGAGACATGGGCCTCTAA 564 |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 614 AAGGATATGAGATTGGAAAAGGAAGCCAGGATGCTCGAGACATGGGCCTCTAA 666 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27076205233 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5