BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904276 Length=678 Score E Sequences producing significant alignments: (Bits) Value AT3G13672.2 | Symbols: | TRAF-like superfamily protein | chr3:... 905 0.0 > AT3G13672.2 | Symbols: | TRAF-like superfamily protein | chr3:4472563-4474364 REVERSE LENGTH=1662 Length=1662 Score = 905 bits (490), Expect = 0.0 Identities = 619/679 (91%), Gaps = 17/679 (3%) Strand=Plus/Plus Query 1 ATGGAACCTCGAATCAATGACCTTCAGATTGAATCTCGGGTTCATGCGTTGCTTGATTTT 60 ||||||||||||||||||||||||||| | |||||||||||||||| |||||| |||||| Sbjct 22 ATGGAACCTCGAATCAATGACCTTCAGGTGGAATCTCGGGTTCATGAGTTGCTCGATTTT 81 Query 61 CCGGTTCGTACAAACCAGATGCCCTCTGCAATTTACCAGATCCTATTACAGTGTCCGAAC 120 ||||||| |||||||||||| |||||||||| ||| |||||||||| |||||| | | Sbjct 82 CCGGTTCATACAAACCAGATATCCTCTGCAATCTACGAGATCCTATTGCAGTGT-C---C 137 Query 121 GACGATACCGAAGAGCTCAACATTGAGAACTCAAAGAAGAAACCATACAAGTGTCCATAC 180 | | | | || | | |||| || ||| | ||||||||||| ||||| |||||| || Sbjct 138 --C-A-A-C---GA-C-C-ACATCGAAAACCCTAAGAAGAAACCGTACAATTGTCCACAC 186 Query 181 TCAGGAGCCAAGTGTAATGTCACAGGAGATATTCAAAGGCTGCTTCTGCATCTAAGGAAT 240 ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| Sbjct 187 TCAGGAGCCAAGTGTGATGTCACAGGAGATATTCAAAGGCTACTACTGCATCTAAGGAAT 246 Query 241 GATCACAATGTTGAAATGCA-TGATGGGCGTAGTTTCAGTCATAGATATGTTCATCATAA 299 |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| | Sbjct 247 GATCACAATGTTGAAATG-AGTGATGGGCGTAGTTTCAGTCACAGATATGTTCATCATGA 305 Query 300 TCCTAAACATCTTCATCATGCTACTTGTATGTTAACCCTTCTCGATTGTTTTGGTCGACA 359 ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| | Sbjct 306 TCCTAAACATCTTCATCATGCTACTTGGATGTTAACACTTCTCGATTGTTGTGGTCGAAA 365 Query 360 ATTCTGCTTATACTTCGAAGCATTTCACCTGAGGAAAACACCAATGTACATAGCATTTAT 419 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| || || || Sbjct 366 ATTCTGCTTGTACTTCGAAGCGTTTCACCTGAGGAAAACACCAATGTACATGGCCTTCAT 425 Query 420 GCAGTTTATGGGAGATGAAGAAGAAGCAATGAGCTTCAGCTATAGTTTGGAGGTCGGTGG 479 |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || Sbjct 426 GCAGTTTATGGGAGATGAAGAAGAGGCAATGAGCTTCAGCTATAGTTTGCAGGTCGGAGG 485 Query 480 CAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTTGTGACAGTCACAAGAC 539 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 486 GAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTCGTGACAGTCACAAGAC 545 Query 540 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTCGTTCTTCTGTAC 599 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 546 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTTGTTCTTCTCTAC 605 Query 600 CGACAACAACACCACCAACAAGGAACTGAAGTTGAAGGTTTCAGGCCGTGTATGGAGAGA 659 |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| Sbjct 606 CGACAACAACACCACCGACAAGGAGCTGAAGTTGAAGGTTTCAGGTCGTGTATGGAGAGA 665 Query 660 ACAGCCTATTTCGTTATGA 678 ||||||| ||||| ||||| Sbjct 666 ACAGCCTGTTTCGATATGA 684 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32802897991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5