BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904276
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13672.2 | Symbols: | TRAF-like superfamily protein | chr3:... 905 0.0
> AT3G13672.2 | Symbols: | TRAF-like superfamily protein | chr3:4472563-4474364
REVERSE LENGTH=1662
Length=1662
Score = 905 bits (490), Expect = 0.0
Identities = 619/679 (91%), Gaps = 17/679 (3%)
Strand=Plus/Plus
Query 1 ATGGAACCTCGAATCAATGACCTTCAGATTGAATCTCGGGTTCATGCGTTGCTTGATTTT 60
||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||
Sbjct 22 ATGGAACCTCGAATCAATGACCTTCAGGTGGAATCTCGGGTTCATGAGTTGCTCGATTTT 81
Query 61 CCGGTTCGTACAAACCAGATGCCCTCTGCAATTTACCAGATCCTATTACAGTGTCCGAAC 120
||||||| |||||||||||| |||||||||| ||| |||||||||| |||||| | |
Sbjct 82 CCGGTTCATACAAACCAGATATCCTCTGCAATCTACGAGATCCTATTGCAGTGT-C---C 137
Query 121 GACGATACCGAAGAGCTCAACATTGAGAACTCAAAGAAGAAACCATACAAGTGTCCATAC 180
| | | | || | | |||| || ||| | ||||||||||| ||||| |||||| ||
Sbjct 138 --C-A-A-C---GA-C-C-ACATCGAAAACCCTAAGAAGAAACCGTACAATTGTCCACAC 186
Query 181 TCAGGAGCCAAGTGTAATGTCACAGGAGATATTCAAAGGCTGCTTCTGCATCTAAGGAAT 240
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 187 TCAGGAGCCAAGTGTGATGTCACAGGAGATATTCAAAGGCTACTACTGCATCTAAGGAAT 246
Query 241 GATCACAATGTTGAAATGCA-TGATGGGCGTAGTTTCAGTCATAGATATGTTCATCATAA 299
|||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
Sbjct 247 GATCACAATGTTGAAATG-AGTGATGGGCGTAGTTTCAGTCACAGATATGTTCATCATGA 305
Query 300 TCCTAAACATCTTCATCATGCTACTTGTATGTTAACCCTTCTCGATTGTTTTGGTCGACA 359
||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |
Sbjct 306 TCCTAAACATCTTCATCATGCTACTTGGATGTTAACACTTCTCGATTGTTGTGGTCGAAA 365
Query 360 ATTCTGCTTATACTTCGAAGCATTTCACCTGAGGAAAACACCAATGTACATAGCATTTAT 419
||||||||| ||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 366 ATTCTGCTTGTACTTCGAAGCGTTTCACCTGAGGAAAACACCAATGTACATGGCCTTCAT 425
Query 420 GCAGTTTATGGGAGATGAAGAAGAAGCAATGAGCTTCAGCTATAGTTTGGAGGTCGGTGG 479
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 426 GCAGTTTATGGGAGATGAAGAAGAGGCAATGAGCTTCAGCTATAGTTTGCAGGTCGGAGG 485
Query 480 CAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTTGTGACAGTCACAAGAC 539
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 486 GAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTCGTGACAGTCACAAGAC 545
Query 540 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTCGTTCTTCTGTAC 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 546 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTTGTTCTTCTCTAC 605
Query 600 CGACAACAACACCACCAACAAGGAACTGAAGTTGAAGGTTTCAGGCCGTGTATGGAGAGA 659
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 606 CGACAACAACACCACCGACAAGGAGCTGAAGTTGAAGGTTTCAGGTCGTGTATGGAGAGA 665
Query 660 ACAGCCTATTTCGTTATGA 678
||||||| ||||| |||||
Sbjct 666 ACAGCCTGTTTCGATATGA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5