BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904278
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 852 0.0
AT3G13677.1 | Symbols: | unknown protein; Has 24 Blast hits to... 318 6e-86
AT3G06545.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 292 3e-78
> AT3G11060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: flower;
EXPRESSED DURING: petal differentiation and expansion stage;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G06545.1); Has 12 Blast hits to 12 proteins in 2 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:3466303-3466944 REVERSE LENGTH=642
Length=642
Score = 852 bits (461), Expect = 0.0
Identities = 582/637 (91%), Gaps = 21/637 (3%)
Strand=Plus/Plus
Query 334 ATGGAGAACATAAAGAGTAAAAGAGATGTTATTGTATGCAGAGGAATATGGTATGCCATG 393
|||||||| || ||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 1 ATGGAGAAGATGAAGAGTAAAAGAGATGTGATTGTATGCAGAGGATTATGGTATGCAATG 60
Query 394 ACTCTACTCTCGC-TCTTTGGCCTCTCCATATCCCTCAACCTTCTCTGGCCACCTGGTGA 452
||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 61 ACTCTACTCTC-CATCTTTGGCCTCTCCATATCCCTCAACCTTCTCTTGCCATCTGGTGA 119
Query 453 CTCGTCATCGACGTCTCGGTTCCTAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGC 512
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTC--C-T---CGTCTCGGTTCCTAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGC 173
Query 513 AGTGACGCTACTCAGATATCTCTTT-TTCACCCATCCTCCCTCCACTTGCTACACGGAGT 571
||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 174 AGTGACGATACTCAGATATCT-TTTCTTCACCGATCCTCCCTCCACTTGCTACACGGAGT 232
Query 572 TTACTGCACCTAAAGAGAGGATTCCTCAGGTTGTGTTCTCGGAGCTTGCCTTGTACCTAG 631
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TTACTACACCTAAAAAGAGGATTCCTCAGGTTGTGTTCTCGGAGCTTGCCTTGTACCTAG 292
Query 632 TGTTCACAACGCCGCTA-CAATGTTCACTCTTGTTTACGAACAACGTGTTGTCTTTGTTA 690
|||||| |||||||||| | ||||||||| |||||||| | ||||||||||||||||||
Sbjct 293 TGTTCATAACGCCGCTAGCT-TGTTCACTCGTGTTTACGGAGAACGTGTTGTCTTTGTTA 351
Query 691 TACATATCGTTATTCATCATATCATTGTTCACCGGAGGGATAGGGCTTATTCAGCTATCA 750
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
Sbjct 352 TACATATCGTTATTCACCATATCGTTGTTCACCGGAGGGATAGGGCTTATTCAGCTAACG 411
Query 751 GAAAAGTGTAGGATGGAGACGAGACATGCTTTGATCACACTTTTCTTCGGTTGGTTGTTT 810
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 412 GAAAAGTGTAGGATGGAGACGAGACATGCTTTGATCACGCTTTTCTTCGGTTGGTTGTTT 471
Query 811 GGTCTTTTTGGCATCTTTGAAGCTTTATACTGC-AACGACTATAACGGAGTGGCGTTGTT 869
||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct 472 GGTCTTTTTGGCATCTTTGAAGCTTTATACT-CTAAGGACTATAACGGAGTGGCATTGTT 530
Query 870 CCTTGCCAATCTTTATGTAATGTTTTCCCTTGGGCTCTTTTTGTATAATTTCCCCTTG-A 928
| || ||| |||||||||| || ||||| ||||||||||| |||||||||||||| | |
Sbjct 531 CGTTACCAGTCTTTATGTATTGGTTTCCTTTGGGCTCTTTGCGTATAATTTCCCCTCGGA 590
Query 929 GAAGGA------CTTGCATACTTTGCCTGCTTCTCCC 959
|||||| ||||||||||||| |||| ||||||
Sbjct 591 GAAGGAGAAGGACTTGCATACTTTGACTGCATCTCCC 627
> AT3G13677.1 | Symbols: | unknown protein; Has 24 Blast hits
to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:4476296-4477092 FORWARD
LENGTH=516
Length=516
Score = 318 bits (172), Expect = 6e-86
Identities = 190/198 (96%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGCAGAGGTAATCGTGTGGGAGAAAGATGGAATGAGATGGATTGTGATGAGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGCAGAGGTAATCGTGTGGGAGAAAGATGGAATGAGATGGATTGTGATGAGAAA 60
Query 61 TCGAGTGTGATTCAGGAAGAGATCAAAAGAGTTGGTAAA-TTGCCATCAAACAGTGTTTA 119
||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||
Sbjct 61 TCGAGTGTGATTCAGGAAGAGATCAAAAGGGTTTGTAAACTT-CCATCAAACAGTGTTTA 119
Query 120 TGCAGTTCATCGTCTCAAGGTTCTCAACAAAATCAACGAGCTTTTATCTGTCCAAAGAAC 179
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 120 TGCAGTTCATCGTCTCAAGGTTCTCAACAAAATCAACGACCTTTTATCTGTCCAAA-A-C 177
Query 180 ATTGTCCCAAGAGAAGGA 197
|||||| |||||||||||
Sbjct 178 ATTGTCTCAAGAGAAGGA 195
> AT3G06545.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G11060.1); Has
12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2038312-2038977
FORWARD LENGTH=576
Length=576
Score = 292 bits (158), Expect = 3e-78
Identities = 378/479 (79%), Gaps = 36/479 (8%)
Strand=Plus/Plus
Query 358 GATGT-TATTGTATGCAGAGGAATATGGTATGCCATGACTCTACTCTCGCTCTTTGGCCT 416
||||| | |||| |||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 25 GATGTGT-TTGTTTGCAGAGGAATATGGTATATAATGACTCTACTCTCACTTTTTGGCCT 83
Query 417 CTCCATATCCCTCAACCTTCTCTGGCCACCTGGTGACTCGTCATCGACGTCTCGGTTCC- 475
||||| ||| ||||| ||||||||||||||||| || | |||| |||||| | |||
Sbjct 84 CTCCAAATCACTCAATCTTCTCTGGCCACCTGGAGA-T--TCAT---CGTCTCAG-TCCT 136
Query 476 TAAGAGACGGTGCGGTCAGTGCCACAACATTCTACGCAGTGACGCTACTCAGATATCTCT 535
| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 137 TTAGGGACGGTGCGGTCAGTGTCACAACATTCTACGCAGTGACGCTACTCAGATATCTTT 196
Query 536 TTTTCACC-CATCCTCCCTCCACTTGCTACACGGAGTTTACTGCACC-TAA-AGAGAGGA 592
|||||||| | |||||| ||| ||||||||| |||||||||| || | |||||| |
Sbjct 197 TTTTCACCGC-TCCTCCTTCCGCTTGCTACAAGGAGTTTACTACAAAGTTGGAGAGAGTA 255
Query 593 TTCCTCAGGTTGTGTTCTCGG-AGCTTGCCTTGTACCTAGTGTTCACAACGCCGCTACAA 651
||||||||| |||| ||| | || || | ||| ||| || ||| || ||
Sbjct 256 --CCTCAGGTTTTGTTTTCGACATTTT-CCGCAAATTTAGCGTTGGCATTGCC-CTT-AA 310
Query 652 TGT-TCA-CTCTTGTTTACGAACAACGTGTT-GTCTTTGTTATACATATCGTTATTCATC 708
| | | | || ||| || ||||| | ||| | || || ||| |||||||||| |
Sbjct 311 TATATGAGCTATTG---ACAAACAAAGAGTTTGAATT-GTC---CATGTCGTTATTCACC 363
Query 709 ATATCATTGTTCACCGGAGGGATAGGGCTTATTCAGCTATCAGAAAAGTGTAGGATGGAG 768
|| || ||||||||||||||| ||||||| ||||||||||| || |||| ||||||||||
Sbjct 364 ATCTCGTTGTTCACCGGAGGGTTAGGGCTGATTCAGCTATCGGATAAGTTTAGGATGGAG 423
Query 769 A-CGAGACATGCTTTG-ATCACACTTTTCTTCGGTTGGTTGT-TTGGTCTTTTTGGCAT 824
| || ||||||||||| | ||| || ||| |||||||||| | ||| ||| ||| ||||
Sbjct 424 ATCG-GACATGCTTTGTA-CACGCTCTTCCTCGGTTGGTTATCTTG-TCTCTTTAGCAT 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5