BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg904298 Length=1740 Score E Sequences producing significant alignments: (Bits) Value AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class... 1685 0.0 AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic | c... 1565 0.0 AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 189 8e-47 > AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class Ic | chr4:13307977-13313109 REVERSE LENGTH=2352 Length=2352 Score = 1685 bits (912), Expect = 0.0 Identities = 1292/1470 (88%), Gaps = 48/1470 (3%) Strand=Plus/Plus Query 295 AGTATTGAAAATATGCTTATCAATGGGA-TTGAGACATGGGCGCCTACTCTTTCAGTTAA 353 ||||||||||||||||| ||| || ||| |||| |||||||| ||||||||||| ||||| Sbjct 484 AGTATTGAAAATATGCTCATCGAT-GGAGTTGACACATGGGCACCTACTCTTTCGGTTAA 542 Query 354 GAGAGCTGTAGTTGATTTTTCCTCTCCAAATATTGC-AAAGAAAATGCATGTTGGTCATT 412 ||||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||| Sbjct 543 GAGAGCTGTAGTTGATTTTTCCTCTCCCAACATTGCAAAAG-AAATGCATGTTGGTCATC 601 Query 413 TAAGATCAACTATCATCGGTGACAC-CATAGCTCGTATGCTCGAGTACTCTA-ATGTTGA 470 |||||||||||||||| |||||||| | ||||||| |||||||||||||| | ||||||| Sbjct 602 TAAGATCAACTATCATTGGTGACACTC-TAGCTCGCATGCTCGAGTACTC-ACATGTTGA 659 Query 471 AGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATGTTAATTGAGTA 530 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 660 AGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATGCTAATTGAGTA 719 Query 531 CCTCTTTGAGAAATTTCCTGATTCAAATAGTGCGATGGAGACAGCAATTGAAGATATTCA 590 |||||||||||||||||||||| || |||||| || ||||||||||||| |||| |||| Sbjct 720 CCTCTTTGAGAAATTTCCTGATACAGATAGTGTGACCGAGACAGCAATTGGAGATCTTCA 779 Query 591 -GTCGTTATACAAGCCATCAAAAAC-GAAATTTGATGC-AGATTTA-GACTTTAAGCG-A 645 || ||| |||||| |||| ||||| ||||||||| | || | | ||||||| | | Sbjct 780 GGT-GTTTTACAAGGCATC-AAAACATAAATTTGAT-CTGGA-CGAGGCCTTTAAG-GAA 834 Query 646 AAGGCACAACAGGCCGTGGTCCGTCTACAGGGTGGAGATCCTGTATACCACAAGACTT-G 704 || ||||||||||| |||||||||||||||||||| |||||||| |||| ||| ||| | Sbjct 835 AAAGCACAACAGGCTGTGGTCCGTCTACAGGGTGGTGATCCTGTTTACCGTAAGGCTTGG 894 Query 705 GCAAAAACTTTGTGAAATCAGCCGAGCCGA-TTATGCCGAGATTTATCAACGCCTTCGAG 763 || || | | ||||| ||||||||| | || || |||| || |||| ||||||||||||| Sbjct 895 GCTAAGA-TCTGTGACATCAGCCGAACTGAGTT-TGCCAAGGTTTACCAACGCCTTCGAG 952 Query 764 TTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAAACCTTATATTGCTAACA-TGATTGAG 822 |||||||||||||||||||||||||||||||||| ||| |||||||||| | | |||||| Sbjct 953 TTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTCATATTGCTAA-AGTAATTGAG 1011 Query 823 GAATTGAATAGCAAGGGTTTGGTTGAAGAAAGTGATGGTGCTCGTGTGATGTTCATCAAA 882 ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| | || Sbjct 1012 GAATTGAATAGCAAGGGGTTGGTTGAAGAAAGTGAAGGTGCTCGTGTGATTTTCCTTGAA 1071 Query 883 GACTTCAAGA-AT-CCA-TGCATGCTTGTTAAGAGTGATGGTGGTTTTACCTATGACACA 939 | |||| || || ||| | |||| |||| ||||||||||||||||||| ||||| | || Sbjct 1072 GGCTTC--GACATCCCACT-CATGGTTGTAAAGAGTGATGGTGGTTTTAACTATGCCTCA 1128 Query 940 ACAGATCTTG-CTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTGAGTGGATTATTTA 998 ||||||| || ||||||||||||| ||||| ||||||||||||||||||||||| || || Sbjct 1129 ACAGATC-TGACTGCTCTTTGGTACCGGCTCAATGAAGAGAAAGCTGAGTGGATCATATA 1187 Query 999 TGTGACAGATGCTGGCCAGCAGGAGCACTTTGATAGGTTCTTCAAAGCTGCTAGACAAGT 1058 |||||| |||| |||||||||| |||||||| ||| ||||||||||||||| ||| ||| Sbjct 1188 TGTGACCGATGTTGGCCAGCAGCAGCACTTTAATATGTTCTTCAAAGCTGCCAGAAAAGC 1247 Query 1059 AGGTTGGCTTCCAGACAATGATGAAACTTACCCTAGAGTTAGCCATGTTAAG-TTTGGTG 1117 |||||||||||||||||||||| |||||||||||||||||| ||||||| | |||||| Sbjct 1248 AGGTTGGCTTCCAGACAATGATAAAACTTACCCTAGAGTTAACCATGTT-GGTTTTGGTC 1306 Query 1118 TAGTCAAGGGGGAAGATGGCAAGCGGTTTAGAAATCGCG-ATAGAGAAATAGTCC-CTCT 1175 | ||| ||||||||||||||||| ||||||| ||| | | | ||| |||||| | || Sbjct 1307 TCGTCCTTGGGGAAGATGGCAAGCGATTTAGAACTCGGGCA-ACAGATGTAGTCCGC-CT 1364 Query 1176 AGCTGATTTGCTAGATGAGGCCAAGACTCGCAGTAAAGC-TGCCCTTATTGAGCGTGCTA 1234 || |||||||||||||||||||||||||||||||||| | ||||||||||||||| | || Sbjct 1365 AGTTGATTTGCTAGATGAGGCCAAGACTCGCAGTAAA-CTTGCCCTTATTGAGCGCGGTA 1423 Query 1235 AGGAAAAAGAATGGACACCCGAGGAGCTGGACCAAACAGCTGAGGCAATTGGATATGGTG 1294 |||| |||||||||||||| || || ||||||||||||||||||||| |||||||||||| Sbjct 1424 AGGACAAAGAATGGACACCGGAAGAACTGGACCAAACAGCTGAGGCAGTTGGATATGGTG 1483 Query 1295 CGGTGAAGTATGCTGACTTGATGAACAACATATCT-ACAGATTATAAGTTCAGCTACGAT 1353 |||| |||||||||||| ||| |||||||| || | ||| |||||| ||||||| ||| Sbjct 1484 CGGTCAAGTATGCTGACCTGAAGAACAACAGAT-TAACAAATTATACTTTCAGCTTTGAT 1542 Query 1354 AAAATGCTTAATGACAAGGGAAATACAGCTGTGTACCTTCTTTACGCTCATGCTCGGATC 1413 |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 1543 CAAATGCTTAATGACAAGGGAAATACAGCCGTTTACCTTCTTTACGCCCATGCTCGGATC 1602 Query 1414 TGCTCAATCATCAAG-AAGTCTGGCAAAGACATAGATGAGCTTaaaaaaaCTGGAAAGTT 1472 || ||||||||| || |||||||||||||||||||||||||| ||||| || ||||| || Sbjct 1603 TGTTCAATCATC-AGAAAGTCTGGCAAAGACATAGATGAGCTGAAAAAGACAGGAAAATT 1661 Query 1473 AGCATTGGACCATGCTA-ATGAAAGAGCACTTGGACTTCATTTGCTTCAATTTGCTGAGA 1531 ||||||||| ||||| | ||||| ||||||| || ||||| ||||||| ||||||||||| Sbjct 1662 AGCATTGGATCATGC-AGATGAACGAGCACTGGGGCTTCACTTGCTTCGATTTGCTGAGA 1720 Query 1532 CGGTTGAGGAAGCATGCACCAAATTGTTACCGCA-CATACTGTGCGAGTACCTCTACGAT 1590 |||| |||||||| || ||||| || |||||| | | |||||||||||||||||| || Sbjct 1721 CGGTGGAGGAAGCTTGTACCAACTTATTACCG-AGTGTTCTGTGCGAGTACCTCTACAAT 1779 Query 1591 TTATCTGAACACTATACGAAATTCTACTCCAATTGTCAGGTCAATGGTTCAGCAGAGGAG 1650 ||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||| Sbjct 1780 TTATCTGAACACTTTACCAGATTCTACTCCAATTGTCAGGTCAATGGTTCACCAGAGGAG 1839 Query 1651 ACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAATGCTTCCACCTT 1710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1840 ACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAATGCTTCCACCTT 1899 Query 1711 CTTGGAATCACTCCTGTTTACATGATATGA 1740 |||||||||||||| ||||||| ||| ||| Sbjct 1900 CTTGGAATCACTCCGGTTTACAAGATTTGA 1929 > AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic | chr1:24818911-24822342 REVERSE LENGTH=1991 Length=1991 Score = 1565 bits (847), Expect = 0.0 Identities = 1480/1774 (83%), Gaps = 89/1774 (5%) Strand=Plus/Plus Query 17 AAGAATTCACTGAAAATCTGAA-ACAG-CAGCTCG-TGAAGCTCTTTGATGCGTCTCTGA 73 |||||||||| | ||||| || || | || |||| | |||||||| |||| ||| || | Sbjct 88 AAGAATTCACCGGAAATC-CAAGAC-GCCAACTCGCT-AAGCTCTTCGATGTGTCGCTTA 144 Query 74 AATTAACGGTTCCAGATGAACCTAGTGTTAAGCCTTTGGTTGTGGTTGGAAAATTCGAAG 133 | ||||||||||| |||||||||| |||| |||| ||| | | | ||| ||||| | || Sbjct 145 AGTTAACGGTTCCTGATGAACCTAATGTTGAGCCCTTGATCGAGCCTGGCAAATTTGGAG 204 Query 134 ATTACCAATGTAACAATGCAATGGGACTATGGTC-CAAAGTTAAAGGAAAGGGTACTCAA 192 |||||||||||||||||||||||||||||||||| | || |||||||||||||||| || Sbjct 205 ATTACCAATGTAACAATGCAATGGGACTATGGTCTCTAA-TTAAAGGAAAGGGTACGCAG 263 Query 193 TTCAC-TCGTCCTTTAGCTGTTGCAGAGGCCCTTGTTACA-AATCTCCCTACTTGTGATA 250 ||| | | ||||| ||||||| | |||| ||| || || | ||||||||||| ||| | Sbjct 264 TTC-CGTGGTCCTCCCGCTGTTGGACAGGCTCTTATT-CAGAGTCTCCCTACTTCTGAGA 321 Query 251 TGGTGG-A--A---TC-AT-GC---T-CT-G--TTGCACAA-CCTGGA-TAT-GT-TAA- 290 |||||| | | || || || | || | ||| || || | ||| | ||| Sbjct 322 TGGTGGAATCATGCTCTATAGCTGGTCCTGGATTTG-TTAATGTTGTACTATCATCTAAG 380 Query 291 T-G-T---T---AGTATTGAAAATATGCTTATCAATGGGATTGAGACATGGGCGCCTACT 342 | | | | |||||||||||||||||| | |||||||||| |||||||| |||||| Sbjct 381 TGGATGGCTAAGAGTATTGAAAATATGCTTGTTGATGGGATTGATACATGGGCACCTACT 440 Query 343 CTTTCAGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCAAATATTGC-AAAGAAAATGCA 401 ||||| |||||||||||||||||||||||||||||||| || ||||| |||| ||||||| Sbjct 441 CTTTCGGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCCAACATTGCTAAAG-AAATGCA 499 Query 402 TGTTGGTCAT-TTAAGATCAACTATCATCGGTGACAC-CATAGCTCGTATGCTCGAGTAC 459 |||||||||| || |||||||||||||| |||||||| | ||||||| |||||||||||| Sbjct 500 TGTTGGTCATCTT-AGATCAACTATCATTGGTGACACTC-TAGCTCGCATGCTCGAGTAC 557 Query 460 TCTAATGTTGAAGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATG 519 || || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 558 TCAAAGGTTGAAGTTCTTCGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGGATG 617 Query 520 TTAATTGAGTACCTCTTTGAGAAATTTCCTGATTCAAATAGTGCGATGGAGACAGCAATT 579 ||||||||| ||||||||||||||||||||| || | |||| || |||||||| ||| Sbjct 618 CTAATTGAGTTTCTCTTTGAGAAATTTCCTGATACAGAGAGTGTGACCGAGACAGCTATT 677 Query 580 GAAGATATTCA-GTCGTTATACA-AGCCATCAAAAACGAAATTTGA--TGCAGAT-TTAG 634 | |||| |||| || ||| |||| || ||||||| ||||||||| || | || | | Sbjct 678 GGAGATCTTCAGGT-GTTTTACAGAG-AATCAAAATTGAAATTTGATTTG-A-ATCCT-G 732 Query 635 ACTTTAAGCG-AAAGGCACAACAGGCCGTGGTCCGTCTACAGGGTGGAGATCCTGTATAC 693 | |||||| | ||| ||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 733 AGTTTAAG-GAAAAAGCACAACAGGCTGTGGTCCGTCTTCAGGGTGGAGATCCTGTTTAC 791 Query 694 CACAAGAC-TTGGCAAAAACTTTGTGAAATCAGCCGAGCCGA-TTATGCCGAGATTTATC 751 | | || | | ||| || | |||| |||||||||||| ||| || |||| || |||| | Sbjct 792 CGCCAGGCATGGGCTAAGA-TTTGCGAAATCAGCCGAAACGAGTT-TGCCAAGGTTTA-C 848 Query 752 -AACGCCTTCGAGTTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAAACCTTATATTGCT 810 ||||||||||| | |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 849 AAACGCCTTCGAATCGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTTATATCGCT 908 Query 811 AACATGATTGAGGAATTGAATAGCAAGGGTTTGGTTGAAGAAAGTGATGGTGCTCGTGTG 870 ||| | ||||||||||||| |||||||| || |||||||||||| | |||||||||||| Sbjct 909 AACGTAATTGAGGAATTGAGCAGCAAGGGGTTAGTTGAAGAAAGTAAAGGTGCTCGTGTG 968 Query 871 ATGTTCATCAAAGACTTCAAGAAT-CCA-TGCA-TGCTTGTTAAGAGTGATGGTGGTTTT 927 || ||||| ||| ||| || ||| ||| | || || |||| |||||||||||||||||| Sbjct 969 ATATTCATTGAAGGCTTTAA-AATCCCACT-CATTG-TTGTAAAGAGTGATGGTGGTTTT 1025 Query 928 ACCTATGACACAACAGATCTTGCTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTGAG 987 | ||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1026 AACTATGCCTCAACTGATCTAACTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTGAG 1085 Query 988 TGGATTATTTATGTGACAGATGCTGGCCAGCAGGAGCACTTTGATAGGTTCTTCAAAGCT 1047 |||||||| |||||||| || | |||||||||| |||| ||||||| ||||||||||||| Sbjct 1086 TGGATTATATATGTGACCGACGTTGGCCAGCAGCAGCATTTTGATATGTTCTTCAAAGCT 1145 Query 1048 GCTAGACAAGTAGGTTGGCTTCCAGACAATGATGAAACTTACCCTAGAGTTAGCCATGTT 1107 || ||| ||| ||| |||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1146 GCCAGAAAAGCAGGATGGCTTCCAGACGATGATAAAACTTACCCTAGAGTTAGCCATGTT 1205 Query 1108 AAGTTT-GGTGTAGTCAAGGGGGAAGATGGCAAGCGGTTTAGAAATCGCGATAG-AGAAA 1165 |||| ||| | ||| || || ||| |||||| ||||||| ||| | || ||| Sbjct 1206 G-GTTTTGGTCTTGTCCTTGGAGATGATAACAAGCGATTTAGAACTCGGGC-AGCAGAGG 1263 Query 1166 TAGTCC-CTCTAGCTGATTTGCTAGATGAGGCCAAG-ACTCGCAGTAAAGCTGCCCTTAT 1223 |||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1264 TAGTCCGC-CTAGCTGATTTGCTAGATGAGGCCAAGGA-TCGCAGTAAAGCTGCCCTTAT 1321 Query 1224 TGAGCGTGCTAAGGAAAAAGAATGGACACCCGAGGAGCTGGACCAAACAGCTGAGGCAAT 1283 |||||| | |||||| ||||||||| ||||||||||||||||||||| |||||||||| | Sbjct 1322 TGAGCGCGGTAAGGACAAAGAATGGTCACCCGAGGAGCTGGACCAAATAGCTGAGGCAGT 1381 Query 1284 TGGATATGGTGCGGTGAAGTATGCTGACTTGATGAACAACATA-TCTACAGATTATAAGT 1342 |||||||||||| |||||||||||||| ||| || ||||| | | ||| | ||||| | Sbjct 1382 TGGATATGGTGCCCTGAAGTATGCTGACCTGAAGACCAACAGAAT-TACGGGTTATACTT 1440 Query 1343 TCAGCTACGATAAAATGCTTAATGACAAGGGAAATACAGCTGTGTACCTTCTTTACGCTC 1402 | |||| ||| |||||||||||||||||||| ||||||| || |||||||| ||||| | Sbjct 1441 TTAGCTTTGATCAAATGCTTAATGACAAGGGAGATACAGCCGTTTACCTTCTCTACGCCC 1500 Query 1403 ATGCTCGGATCTGCTCAATCATCAAGAA-GTCTGGCAAAGACATAGATGAGCTTaaaaaa 1461 |||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||| Sbjct 1501 ATGCTCGGATCTGCTCAATCATCA-GAAAGTCTGGAAAAGACATAGATGAGCT-AAAAAA 1558 Query 1462 -aCTGGAAAGTTAGCATTGGACCATGCTAAT-GAAAGAGCACTTGGACTTCATTTGCTTC 1519 || |||||| |||| ||||| ||||| | ||| | ||||| || ||||| |||||| Sbjct 1559 GACAGGAAAGATAGCGTTGGATCATGC-AGCCGAACGGGCACTAGGGCTTCACCTGCTTC 1617 Query 1520 AATTTGCTGAGACGGTTGAGGAAGCATGCACCAAATTGTTACCGCACATACTGTGCGAGT 1579 | |||||||||||||| |||||||| ||||||| |||||||||| | | || ||| ||| Sbjct 1618 AGTTTGCTGAGACGGTGGAGGAAGCGTGCACCACATTGTTACCGAATGTGCTTTGCAAGT 1677 Query 1580 ACCTCTACGATTTATCTGAACACTAT-ACGAAATTCTACTCCAATTGTCAGGTCAATGGT 1638 |||| ||| | ||||| ||| | | | || ||||| ||||||||||||||||| |||||| Sbjct 1678 ACCTTTACTACTTATCCGAAGAGT-TCACCAAATTTTACTCCAATTGTCAGGTGAATGGT 1736 Query 1639 TCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAA 1698 || || |||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| Sbjct 1737 TCGGCCGAGGAGACGAGCCGTCTCTTACTTTGCGAAGCAACGGCTATAGTCATGCGGAAA 1796 Query 1699 TGCTTCCACCTTCTTGGAATCACTCCTGTTTACA 1732 ||||||||||||||||||||||| |||||||||| Sbjct 1797 TGCTTCCACCTTCTTGGAATCACCCCTGTTTACA 1830 > AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). | chr4:13307461-13308953 FORWARD LENGTH=1366 Length=1366 Score = 189 bits (102), Expect = 8e-47 Identities = 110/114 (96%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1627 CAGGTCAATGGTTCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATA 1686 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 926 CAGGTCAATGGTTCACCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATA 867 Query 1687 GTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCTGTTTACATGATATGA 1740 |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 866 GTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCGGTTTACAAGATTTGA 813 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86043734130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5