BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904298
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class... 1685 0.0
AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic | c... 1565 0.0
AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 189 8e-47
> AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class
Ic | chr4:13307977-13313109 REVERSE LENGTH=2352
Length=2352
Score = 1685 bits (912), Expect = 0.0
Identities = 1292/1470 (88%), Gaps = 48/1470 (3%)
Strand=Plus/Plus
Query 295 AGTATTGAAAATATGCTTATCAATGGGA-TTGAGACATGGGCGCCTACTCTTTCAGTTAA 353
||||||||||||||||| ||| || ||| |||| |||||||| ||||||||||| |||||
Sbjct 484 AGTATTGAAAATATGCTCATCGAT-GGAGTTGACACATGGGCACCTACTCTTTCGGTTAA 542
Query 354 GAGAGCTGTAGTTGATTTTTCCTCTCCAAATATTGC-AAAGAAAATGCATGTTGGTCATT 412
||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||
Sbjct 543 GAGAGCTGTAGTTGATTTTTCCTCTCCCAACATTGCAAAAG-AAATGCATGTTGGTCATC 601
Query 413 TAAGATCAACTATCATCGGTGACAC-CATAGCTCGTATGCTCGAGTACTCTA-ATGTTGA 470
|||||||||||||||| |||||||| | ||||||| |||||||||||||| | |||||||
Sbjct 602 TAAGATCAACTATCATTGGTGACACTC-TAGCTCGCATGCTCGAGTACTC-ACATGTTGA 659
Query 471 AGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATGTTAATTGAGTA 530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 AGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATGCTAATTGAGTA 719
Query 531 CCTCTTTGAGAAATTTCCTGATTCAAATAGTGCGATGGAGACAGCAATTGAAGATATTCA 590
|||||||||||||||||||||| || |||||| || ||||||||||||| |||| ||||
Sbjct 720 CCTCTTTGAGAAATTTCCTGATACAGATAGTGTGACCGAGACAGCAATTGGAGATCTTCA 779
Query 591 -GTCGTTATACAAGCCATCAAAAAC-GAAATTTGATGC-AGATTTA-GACTTTAAGCG-A 645
|| ||| |||||| |||| ||||| ||||||||| | || | | ||||||| | |
Sbjct 780 GGT-GTTTTACAAGGCATC-AAAACATAAATTTGAT-CTGGA-CGAGGCCTTTAAG-GAA 834
Query 646 AAGGCACAACAGGCCGTGGTCCGTCTACAGGGTGGAGATCCTGTATACCACAAGACTT-G 704
|| ||||||||||| |||||||||||||||||||| |||||||| |||| ||| ||| |
Sbjct 835 AAAGCACAACAGGCTGTGGTCCGTCTACAGGGTGGTGATCCTGTTTACCGTAAGGCTTGG 894
Query 705 GCAAAAACTTTGTGAAATCAGCCGAGCCGA-TTATGCCGAGATTTATCAACGCCTTCGAG 763
|| || | | ||||| ||||||||| | || || |||| || |||| |||||||||||||
Sbjct 895 GCTAAGA-TCTGTGACATCAGCCGAACTGAGTT-TGCCAAGGTTTACCAACGCCTTCGAG 952
Query 764 TTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAAACCTTATATTGCTAACA-TGATTGAG 822
|||||||||||||||||||||||||||||||||| ||| |||||||||| | | ||||||
Sbjct 953 TTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTCATATTGCTAA-AGTAATTGAG 1011
Query 823 GAATTGAATAGCAAGGGTTTGGTTGAAGAAAGTGATGGTGCTCGTGTGATGTTCATCAAA 882
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| | ||
Sbjct 1012 GAATTGAATAGCAAGGGGTTGGTTGAAGAAAGTGAAGGTGCTCGTGTGATTTTCCTTGAA 1071
Query 883 GACTTCAAGA-AT-CCA-TGCATGCTTGTTAAGAGTGATGGTGGTTTTACCTATGACACA 939
| |||| || || ||| | |||| |||| ||||||||||||||||||| ||||| | ||
Sbjct 1072 GGCTTC--GACATCCCACT-CATGGTTGTAAAGAGTGATGGTGGTTTTAACTATGCCTCA 1128
Query 940 ACAGATCTTG-CTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTGAGTGGATTATTTA 998
||||||| || ||||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 1129 ACAGATC-TGACTGCTCTTTGGTACCGGCTCAATGAAGAGAAAGCTGAGTGGATCATATA 1187
Query 999 TGTGACAGATGCTGGCCAGCAGGAGCACTTTGATAGGTTCTTCAAAGCTGCTAGACAAGT 1058
|||||| |||| |||||||||| |||||||| ||| ||||||||||||||| ||| |||
Sbjct 1188 TGTGACCGATGTTGGCCAGCAGCAGCACTTTAATATGTTCTTCAAAGCTGCCAGAAAAGC 1247
Query 1059 AGGTTGGCTTCCAGACAATGATGAAACTTACCCTAGAGTTAGCCATGTTAAG-TTTGGTG 1117
|||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||
Sbjct 1248 AGGTTGGCTTCCAGACAATGATAAAACTTACCCTAGAGTTAACCATGTT-GGTTTTGGTC 1306
Query 1118 TAGTCAAGGGGGAAGATGGCAAGCGGTTTAGAAATCGCG-ATAGAGAAATAGTCC-CTCT 1175
| ||| ||||||||||||||||| ||||||| ||| | | | ||| |||||| | ||
Sbjct 1307 TCGTCCTTGGGGAAGATGGCAAGCGATTTAGAACTCGGGCA-ACAGATGTAGTCCGC-CT 1364
Query 1176 AGCTGATTTGCTAGATGAGGCCAAGACTCGCAGTAAAGC-TGCCCTTATTGAGCGTGCTA 1234
|| |||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||
Sbjct 1365 AGTTGATTTGCTAGATGAGGCCAAGACTCGCAGTAAA-CTTGCCCTTATTGAGCGCGGTA 1423
Query 1235 AGGAAAAAGAATGGACACCCGAGGAGCTGGACCAAACAGCTGAGGCAATTGGATATGGTG 1294
|||| |||||||||||||| || || ||||||||||||||||||||| ||||||||||||
Sbjct 1424 AGGACAAAGAATGGACACCGGAAGAACTGGACCAAACAGCTGAGGCAGTTGGATATGGTG 1483
Query 1295 CGGTGAAGTATGCTGACTTGATGAACAACATATCT-ACAGATTATAAGTTCAGCTACGAT 1353
|||| |||||||||||| ||| |||||||| || | ||| |||||| ||||||| |||
Sbjct 1484 CGGTCAAGTATGCTGACCTGAAGAACAACAGAT-TAACAAATTATACTTTCAGCTTTGAT 1542
Query 1354 AAAATGCTTAATGACAAGGGAAATACAGCTGTGTACCTTCTTTACGCTCATGCTCGGATC 1413
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1543 CAAATGCTTAATGACAAGGGAAATACAGCCGTTTACCTTCTTTACGCCCATGCTCGGATC 1602
Query 1414 TGCTCAATCATCAAG-AAGTCTGGCAAAGACATAGATGAGCTTaaaaaaaCTGGAAAGTT 1472
|| ||||||||| || |||||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 1603 TGTTCAATCATC-AGAAAGTCTGGCAAAGACATAGATGAGCTGAAAAAGACAGGAAAATT 1661
Query 1473 AGCATTGGACCATGCTA-ATGAAAGAGCACTTGGACTTCATTTGCTTCAATTTGCTGAGA 1531
||||||||| ||||| | ||||| ||||||| || ||||| ||||||| |||||||||||
Sbjct 1662 AGCATTGGATCATGC-AGATGAACGAGCACTGGGGCTTCACTTGCTTCGATTTGCTGAGA 1720
Query 1532 CGGTTGAGGAAGCATGCACCAAATTGTTACCGCA-CATACTGTGCGAGTACCTCTACGAT 1590
|||| |||||||| || ||||| || |||||| | | |||||||||||||||||| ||
Sbjct 1721 CGGTGGAGGAAGCTTGTACCAACTTATTACCG-AGTGTTCTGTGCGAGTACCTCTACAAT 1779
Query 1591 TTATCTGAACACTATACGAAATTCTACTCCAATTGTCAGGTCAATGGTTCAGCAGAGGAG 1650
||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1780 TTATCTGAACACTTTACCAGATTCTACTCCAATTGTCAGGTCAATGGTTCACCAGAGGAG 1839
Query 1651 ACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAATGCTTCCACCTT 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 ACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAATGCTTCCACCTT 1899
Query 1711 CTTGGAATCACTCCTGTTTACATGATATGA 1740
|||||||||||||| ||||||| ||| |||
Sbjct 1900 CTTGGAATCACTCCGGTTTACAAGATTTGA 1929
> AT1G66530.1 | Symbols: | Arginyl-tRNA synthetase, class Ic |
chr1:24818911-24822342 REVERSE LENGTH=1991
Length=1991
Score = 1565 bits (847), Expect = 0.0
Identities = 1480/1774 (83%), Gaps = 89/1774 (5%)
Strand=Plus/Plus
Query 17 AAGAATTCACTGAAAATCTGAA-ACAG-CAGCTCG-TGAAGCTCTTTGATGCGTCTCTGA 73
|||||||||| | ||||| || || | || |||| | |||||||| |||| ||| || |
Sbjct 88 AAGAATTCACCGGAAATC-CAAGAC-GCCAACTCGCT-AAGCTCTTCGATGTGTCGCTTA 144
Query 74 AATTAACGGTTCCAGATGAACCTAGTGTTAAGCCTTTGGTTGTGGTTGGAAAATTCGAAG 133
| ||||||||||| |||||||||| |||| |||| ||| | | | ||| ||||| | ||
Sbjct 145 AGTTAACGGTTCCTGATGAACCTAATGTTGAGCCCTTGATCGAGCCTGGCAAATTTGGAG 204
Query 134 ATTACCAATGTAACAATGCAATGGGACTATGGTC-CAAAGTTAAAGGAAAGGGTACTCAA 192
|||||||||||||||||||||||||||||||||| | || |||||||||||||||| ||
Sbjct 205 ATTACCAATGTAACAATGCAATGGGACTATGGTCTCTAA-TTAAAGGAAAGGGTACGCAG 263
Query 193 TTCAC-TCGTCCTTTAGCTGTTGCAGAGGCCCTTGTTACA-AATCTCCCTACTTGTGATA 250
||| | | ||||| ||||||| | |||| ||| || || | ||||||||||| ||| |
Sbjct 264 TTC-CGTGGTCCTCCCGCTGTTGGACAGGCTCTTATT-CAGAGTCTCCCTACTTCTGAGA 321
Query 251 TGGTGG-A--A---TC-AT-GC---T-CT-G--TTGCACAA-CCTGGA-TAT-GT-TAA- 290
|||||| | | || || || | || | ||| || || | ||| | |||
Sbjct 322 TGGTGGAATCATGCTCTATAGCTGGTCCTGGATTTG-TTAATGTTGTACTATCATCTAAG 380
Query 291 T-G-T---T---AGTATTGAAAATATGCTTATCAATGGGATTGAGACATGGGCGCCTACT 342
| | | | |||||||||||||||||| | |||||||||| |||||||| ||||||
Sbjct 381 TGGATGGCTAAGAGTATTGAAAATATGCTTGTTGATGGGATTGATACATGGGCACCTACT 440
Query 343 CTTTCAGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCAAATATTGC-AAAGAAAATGCA 401
||||| |||||||||||||||||||||||||||||||| || ||||| |||| |||||||
Sbjct 441 CTTTCGGTTAAGAGAGCTGTAGTTGATTTTTCCTCTCCCAACATTGCTAAAG-AAATGCA 499
Query 402 TGTTGGTCAT-TTAAGATCAACTATCATCGGTGACAC-CATAGCTCGTATGCTCGAGTAC 459
|||||||||| || |||||||||||||| |||||||| | ||||||| ||||||||||||
Sbjct 500 TGTTGGTCATCTT-AGATCAACTATCATTGGTGACACTC-TAGCTCGCATGCTCGAGTAC 557
Query 460 TCTAATGTTGAAGTTCTACGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGCATG 519
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 558 TCAAAGGTTGAAGTTCTTCGCAGAAACCATGTTGGTGACTGGGGAACACAGTTTGGGATG 617
Query 520 TTAATTGAGTACCTCTTTGAGAAATTTCCTGATTCAAATAGTGCGATGGAGACAGCAATT 579
||||||||| ||||||||||||||||||||| || | |||| || |||||||| |||
Sbjct 618 CTAATTGAGTTTCTCTTTGAGAAATTTCCTGATACAGAGAGTGTGACCGAGACAGCTATT 677
Query 580 GAAGATATTCA-GTCGTTATACA-AGCCATCAAAAACGAAATTTGA--TGCAGAT-TTAG 634
| |||| |||| || ||| |||| || ||||||| ||||||||| || | || | |
Sbjct 678 GGAGATCTTCAGGT-GTTTTACAGAG-AATCAAAATTGAAATTTGATTTG-A-ATCCT-G 732
Query 635 ACTTTAAGCG-AAAGGCACAACAGGCCGTGGTCCGTCTACAGGGTGGAGATCCTGTATAC 693
| |||||| | ||| ||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 733 AGTTTAAG-GAAAAAGCACAACAGGCTGTGGTCCGTCTTCAGGGTGGAGATCCTGTTTAC 791
Query 694 CACAAGAC-TTGGCAAAAACTTTGTGAAATCAGCCGAGCCGA-TTATGCCGAGATTTATC 751
| | || | | ||| || | |||| |||||||||||| ||| || |||| || |||| |
Sbjct 792 CGCCAGGCATGGGCTAAGA-TTTGCGAAATCAGCCGAAACGAGTT-TGCCAAGGTTTA-C 848
Query 752 -AACGCCTTCGAGTTGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAAACCTTATATTGCT 810
||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 849 AAACGCCTTCGAATCGAGCTTGAAGAAAAGGGAGAAAGCTTTTACAACCCTTATATCGCT 908
Query 811 AACATGATTGAGGAATTGAATAGCAAGGGTTTGGTTGAAGAAAGTGATGGTGCTCGTGTG 870
||| | ||||||||||||| |||||||| || |||||||||||| | ||||||||||||
Sbjct 909 AACGTAATTGAGGAATTGAGCAGCAAGGGGTTAGTTGAAGAAAGTAAAGGTGCTCGTGTG 968
Query 871 ATGTTCATCAAAGACTTCAAGAAT-CCA-TGCA-TGCTTGTTAAGAGTGATGGTGGTTTT 927
|| ||||| ||| ||| || ||| ||| | || || |||| ||||||||||||||||||
Sbjct 969 ATATTCATTGAAGGCTTTAA-AATCCCACT-CATTG-TTGTAAAGAGTGATGGTGGTTTT 1025
Query 928 ACCTATGACACAACAGATCTTGCTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTGAG 987
| ||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AACTATGCCTCAACTGATCTAACTGCTCTTTGGTATCGGCTTAATGAAGAGAAAGCTGAG 1085
Query 988 TGGATTATTTATGTGACAGATGCTGGCCAGCAGGAGCACTTTGATAGGTTCTTCAAAGCT 1047
|||||||| |||||||| || | |||||||||| |||| ||||||| |||||||||||||
Sbjct 1086 TGGATTATATATGTGACCGACGTTGGCCAGCAGCAGCATTTTGATATGTTCTTCAAAGCT 1145
Query 1048 GCTAGACAAGTAGGTTGGCTTCCAGACAATGATGAAACTTACCCTAGAGTTAGCCATGTT 1107
|| ||| ||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1146 GCCAGAAAAGCAGGATGGCTTCCAGACGATGATAAAACTTACCCTAGAGTTAGCCATGTT 1205
Query 1108 AAGTTT-GGTGTAGTCAAGGGGGAAGATGGCAAGCGGTTTAGAAATCGCGATAG-AGAAA 1165
|||| ||| | ||| || || ||| |||||| ||||||| ||| | || |||
Sbjct 1206 G-GTTTTGGTCTTGTCCTTGGAGATGATAACAAGCGATTTAGAACTCGGGC-AGCAGAGG 1263
Query 1166 TAGTCC-CTCTAGCTGATTTGCTAGATGAGGCCAAG-ACTCGCAGTAAAGCTGCCCTTAT 1223
|||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1264 TAGTCCGC-CTAGCTGATTTGCTAGATGAGGCCAAGGA-TCGCAGTAAAGCTGCCCTTAT 1321
Query 1224 TGAGCGTGCTAAGGAAAAAGAATGGACACCCGAGGAGCTGGACCAAACAGCTGAGGCAAT 1283
|||||| | |||||| ||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 1322 TGAGCGCGGTAAGGACAAAGAATGGTCACCCGAGGAGCTGGACCAAATAGCTGAGGCAGT 1381
Query 1284 TGGATATGGTGCGGTGAAGTATGCTGACTTGATGAACAACATA-TCTACAGATTATAAGT 1342
|||||||||||| |||||||||||||| ||| || ||||| | | ||| | ||||| |
Sbjct 1382 TGGATATGGTGCCCTGAAGTATGCTGACCTGAAGACCAACAGAAT-TACGGGTTATACTT 1440
Query 1343 TCAGCTACGATAAAATGCTTAATGACAAGGGAAATACAGCTGTGTACCTTCTTTACGCTC 1402
| |||| ||| |||||||||||||||||||| ||||||| || |||||||| ||||| |
Sbjct 1441 TTAGCTTTGATCAAATGCTTAATGACAAGGGAGATACAGCCGTTTACCTTCTCTACGCCC 1500
Query 1403 ATGCTCGGATCTGCTCAATCATCAAGAA-GTCTGGCAAAGACATAGATGAGCTTaaaaaa 1461
|||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||
Sbjct 1501 ATGCTCGGATCTGCTCAATCATCA-GAAAGTCTGGAAAAGACATAGATGAGCT-AAAAAA 1558
Query 1462 -aCTGGAAAGTTAGCATTGGACCATGCTAAT-GAAAGAGCACTTGGACTTCATTTGCTTC 1519
|| |||||| |||| ||||| ||||| | ||| | ||||| || ||||| ||||||
Sbjct 1559 GACAGGAAAGATAGCGTTGGATCATGC-AGCCGAACGGGCACTAGGGCTTCACCTGCTTC 1617
Query 1520 AATTTGCTGAGACGGTTGAGGAAGCATGCACCAAATTGTTACCGCACATACTGTGCGAGT 1579
| |||||||||||||| |||||||| ||||||| |||||||||| | | || ||| |||
Sbjct 1618 AGTTTGCTGAGACGGTGGAGGAAGCGTGCACCACATTGTTACCGAATGTGCTTTGCAAGT 1677
Query 1580 ACCTCTACGATTTATCTGAACACTAT-ACGAAATTCTACTCCAATTGTCAGGTCAATGGT 1638
|||| ||| | ||||| ||| | | | || ||||| ||||||||||||||||| ||||||
Sbjct 1678 ACCTTTACTACTTATCCGAAGAGT-TCACCAAATTTTACTCCAATTGTCAGGTGAATGGT 1736
Query 1639 TCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATAGTCATGCGGAAA 1698
|| || |||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1737 TCGGCCGAGGAGACGAGCCGTCTCTTACTTTGCGAAGCAACGGCTATAGTCATGCGGAAA 1796
Query 1699 TGCTTCCACCTTCTTGGAATCACTCCTGTTTACA 1732
||||||||||||||||||||||| ||||||||||
Sbjct 1797 TGCTTCCACCTTCTTGGAATCACCCCTGTTTACA 1830
> AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast
hits to 232 proteins in 41 species: Archae - 0; Bacteria
- 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2;
Other Eukaryotes - 67 (source: NCBI BLink). | chr4:13307461-13308953
FORWARD LENGTH=1366
Length=1366
Score = 189 bits (102), Expect = 8e-47
Identities = 110/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1627 CAGGTCAATGGTTCAGCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATA 1686
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CAGGTCAATGGTTCACCAGAGGAGACAAGCCGTCTCCTACTTTGTGAAGCAACGGCCATA 867
Query 1687 GTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCTGTTTACATGATATGA 1740
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 866 GTCATGCGGAAATGCTTCCACCTTCTTGGAATCACTCCGGTTTACAAGATTTGA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5