BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg904299

Length=2577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, c...   182    2e-44


> AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, 
class II | chr3:4395725-4399325 REVERSE LENGTH=2091
Length=2091

 Score =  182 bits (98),  Expect = 2e-44
 Identities = 121/131 (92%), Gaps = 5/131 (4%)
 Strand=Plus/Plus

Query  2269  TATGTTGATATGATTGCTAATCCTGTAGTGGCTGATGTGTTCCGGAGAAGGGCAAAAGTA  2328
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  |
Sbjct  738   TATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGGGC-AAA--A  794

Query  2329  GATTGTTTCCCTAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTC  2388
              || |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  795   -ATCGTTT-CAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTC  852

Query  2389  CACTTCTTCAG  2399
             || ||||||||
Sbjct  853   CAGTTCTTCAG  863


 Score =  167 bits (90),  Expect = 5e-40
 Identities = 106/113 (94%), Gaps = 3/113 (3%)
 Strand=Plus/Plus

Query  2057  GGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCATCAAA-TCTCTCCTTCCACTG  2115
             ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| 
Sbjct  628   GGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCA-CAAAGTCTCTCCTTCCACTT  686

Query  2116  CCAGACAGATATCATGGCCTAACTGATATTGATAAAATGTTACCGCCAACGGT  2168
             ||||||| ||||||||| ||||||||||||||||||  |||||||||||||||
Sbjct  687   CCAGACAAATATCATGGTCTAACTGATATTGATAAAC-GTTACCGCCAACGGT  738



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 127925704650


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5