BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904328
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14020.1 | Symbols: NF-YA6 | nuclear factor Y, subunit A6 | ... 1260 0.0
> AT3G14020.1 | Symbols: NF-YA6 | nuclear factor Y, subunit A6
| chr3:4642280-4644301 FORWARD LENGTH=1241
Length=1241
Score = 1260 bits (682), Expect = 0.0
Identities = 869/954 (91%), Gaps = 33/954 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGAGTTTC--A-CAGCAAAGAATCATTGCCTTATCCTGTAACTTCTTGGGAAAAC 57
||||||||||| | | |||||||| |||||||||| ||||| |||||||||||| |||
Sbjct 315 ATGCAAGAGTTCCATAGTAGCAAAGATTCATTGCCTTGTCCTGCAACTTCTTGGGATAAC 374
Query 58 TCTGTCGTCACCAACTCAAATGTCCAAGGATCATCATCCATGACCGATAACAACACTTTA 117
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 375 TCTGTCTTCACCAACTCAAATGTCCAAGGATCATCATCCTTGACCGATAACAACACTTTA 434
Query 118 AGCTTGAAGATGGAGATGATGTCTACCCATTTCCCTGAGATGAAACAAACTGGTTTTCAT 177
||| | ||| | | | | |||||||||||||||||||||||
Sbjct 435 AGC-------T-----TGA---C-A---A--T---GGAGATGAAACAAACTGGTTTTCAA 470
Query 178 TTGCACG-ACCATGATTCCTCCTCTACTCAATCCACTGGAGGAGAATCATATAGTGAAGT 236
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATGCA-GCACTATGATTCCTCCTCTACTCAATCCACTGGAGGAGAATCATATAGTGAAGT 529
Query 237 TGCGAGCTTAAGCGAACCTAATAATCGTTATGACCACAACATTGTTGTTACTCAACTCTC 296
||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||| |||||
Sbjct 530 TGCTAGCTTAAGTGAACCTACTAATCGTTATGGCCACAACATTGTTGTCACTCATCTCTC 589
Query 297 AGGTTACAAAGAAAACCTGGAGAATCCTATTGGAAGTCATTCGA-AGTCGAAGGTGTCTC 355
||||||||||||||||| ||| |||||||||||||||||||||| | || ||||||||||
Sbjct 590 AGGTTACAAAGAAAACCCGGAAAATCCTATTGGAAGTCATTCGATA-TCAAAGGTGTCTC 648
Query 356 AAGATTCAGTGGTTCTTCCTATTGAGGCGTCTTCTTGGCCTTTACACGGCAATGTAACAC 415
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 649 AAGATTCAGTGGTTCTTCCTATTGAGGCGGCTTCTTGGCCTTTACACGGCAATGTAACGC 708
Query 416 CACATTTCAATGGTTTCTTGTCTTTTCCGTATGCATCACAACACATGGTGCAGCATCCTC 475
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 709 CACATTTCAATGGTTTCTTGTCTTTTCCTTATGCATCACAACACACGGTGCAGCATCCTC 768
Query 476 AAATTGGAGGGTTGGTTCCTTGTAGAGTGCCTTTGCCTCACAACATTCCAGAGAACGAAC 535
|||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 769 AAATCAGAGGGTTGGTTCCGTCTAGAATGCCTTTGCCTCACAACATTCCAGAGAACGAAC 828
Query 536 CAATTTTCGTCAATGCAAAACAGTACCAAGCCATTCTCCGCCGCAGACAGCGCCGTGCAA 595
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 829 CAATTTTCGTCAATGCAAAACAGTACCAAGCCATTCTCCGCCGCAGAGAGCGCCGTGCAA 888
Query 596 AGCTTGAAGCTCAGAACAAGCTCATCAAAGTCCGCAAACCATACCTTCACGAGTCGCGCC 655
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 889 AGCTTGAAGCTCAGAACAAGCTCATCAAAGTCCGCAAACCATATCTTCACGAGTCGCGGC 948
Query 656 ACCTTCATGCGTTAAAGAGAGCTAGAGGCTCTGGTGGGCGTTTCCTCAACACAAAGAAGC 715
|||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 949 ACCTCCATGCACTAAAGAGAGTTAGAGGCTCTGGTGGACGTTTCCTCAACACAAAGAAGC 1008
Query 716 TTCAAGAATCAAAATCTTCACAAGCTCCTCCATTCTTGGAT-CCACCGCATGTCTTCAAG 774
|||||||||||| || |||| | |||||||||||||| || ||||| ||||||||||||
Sbjct 1009 ATCAAGAATCAAATTCCTCACTATCTCCTCCATTCTTG-ATTCCACCTCATGTCTTCAAG 1067
Query 775 AACTCTCCAGGAAAATTCCGGCAACGGGACATTTCAAGGGGTGGGGTCGGGTCTAGTGGC 834
|||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||| |
Sbjct 1068 AACTCTCCAGGAAAGTTCCGGCAAATGGACATTTCAAGGGGTGGGGTTGTGTCTAGTGTC 1127
Query 835 TCGACAACATCTTGCTCGGACATAACCGGGAACAACAACGACATGTTCCAACAAAACCCA 894
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1128 TCGACAACATCTTGCTCGGACATAACCGGGAACAACAACGACATGTTCCAGCAAAACCCA 1187
Query 895 CAATTCGGGTTCTCAGGTTATCCATCAAACCACCATGTCTCAGTCCTCATGTGA 948
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CAATTCAGGTTCTCAGGTTATCCATCAAACCACCATGTCTCAGTCCTCATGTGA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5