BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904360
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14260.1 | Symbols: | Protein of unknown function (DUF567) ... 1081 0.0
> AT3G14260.1 | Symbols: | Protein of unknown function (DUF567)
| chr3:4747769-4748819 REVERSE LENGTH=950
Length=950
Score = 1081 bits (585), Expect = 0.0
Identities = 660/696 (95%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 1 ATGCAAATAAACCGACGACCTTTTGAAACAAAAACTTGGCAGA-ATCGAATCTGTCCATC 59
||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||| |
Sbjct 41 ATGCAAATATACCGACGACCTTTTGAGACAAAAACTTGGCA-ATATCGAATCTGTCCAGC 99
Query 60 GGAGACTATGGTGAAGATTCATCCCGATCTGATAACCTCCGGCACCGGAGAAGAAACAA- 118
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 100 AGAGACTATGGTGAAGATTCATCCCGATCTAACAACCTCCGGCGCCGGAGAAGAAACAAG 159
Query 119 TATCGCCGTACTTGACGACGGAGCAAGAGACTTTCACTATATGGATGAAGTCGTTGGTGT 178
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 160 T-TCACCGTACTTGACGACGGAGCAAGAGAGTTTCACTATATGGATGAAGTCGTTGGTGT 218
Query 179 TCAACACAAATGGCTGCACCGTCTTCGATTCCAAAGGGAAA-ATAATCTATCGTGTCGAT 237
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 219 TCAACACAAATGGCTGCACCGTCTTCGATTCCAAA-GGAAACATAATTTATCGTGTCGAC 277
Query 238 AATTATAACTCTAAGAGCTGCCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTCTTG 297
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 278 AATTATAATTCTAAGAGCTGTCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTCTTG 337
Query 298 TTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACTTGGGAAGGATATAGATCATCA 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 338 TTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACATGGGAAGGATATAGATCATCA 397
Query 358 TCTGGAACAGCTGAATCAACGACAAAACTTGAATATTTTCGAGTGAAAAATAATGTTTTT 417
|| | ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 398 TCAGCAACAGTTGAATCAACAACAAAACTAGAATATTTTCGAGTGAAAAATAATGTTTTT 457
Query 418 CAAATTCCGAATAAAGATTCATCATCTTCCTATAGAGTCATCGCGGGATCGTGTAGAAAC 477
||| |||| |||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 458 CAAGTTCCAAATAAAGATTCATCATCTTCGTATAGAGTCAACGCGGGATCATGTAGAAAC 517
Query 478 GATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGATCAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 518 GATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGATAAT 577
Query 538 TGTGGAAAACTATTGGCAGAAGTGAAGAGAAAGCAATCGATAAATGGTTTGAAGTTAGGA 597
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 578 TGTGGAAAACTATTGGCAGAAGTGAAGAGAAAACAATCGATAAACGGTTTGAAGTTGGGA 637
Query 598 GATGATGTTTTGACGATGATGGTTGAGTCACAAGTTGATCACTCTTTCATCATTGGACTT 657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 638 GATGATGTTTTGACGATGATGGTGGAGTCACAAGTTGATCACTCTTTCATCATTGGACTT 697
Query 658 GTTTTAGCTCATAGTCTTATCAATTGTATACTGTAA 693
||||||||||||||||||||||||||||||||||||
Sbjct 698 GTTTTAGCTCATAGTCTTATCAATTGTATACTGTAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5