BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904390
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14580.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1748 0.0
> AT3G14580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:4903012-4904229 FORWARD LENGTH=1218
Length=1218
Score = 1748 bits (946), Expect = 0.0
Identities = 1131/1219 (93%), Gaps = 17/1219 (1%)
Strand=Plus/Plus
Query 1 ATGATTATTCGGAGGCTGGTTCTATTTGCAGCATCGAATTCAAATCCCGGACG--GCCTC 58
|||||| |||||||||| ||||| | |||| ||||||||||||||||| || | | | |
Sbjct 1 ATGATTCTTCGGAGGCTTGTTCTGTCTGCAACATCGAATTCAAATCCCAGAAGAAG-C-C 58
Query 59 AATCACTTTCCGCTTCTACTGTTCG-ACTTCTCTCATCATCATCTTCGGATAGATATACG 117
|||||||||| ||||| |||||| | ||||||||||||||||||| ||||||||||||
Sbjct 59 AATCACTTTCATCTTCTGGTGTTCGTA-TTCTCTCATCATCATCTTCAGATAGATATACG 117
Query 118 CCGTCGTCGCAACGATACTCCGGTGACGATAAG-CTCGCCAGGCTAAAGCACAAAGATTG 176
|||| ||||||||||| |||||||||||| || ||||||||||||| |||||| || ||
Sbjct 118 TCGTCCTCGCAACGATATTCCGGTGACGAT-AGACTCGCCAGGCTAAGGCACAAGGACTG 176
Query 177 GTTAGCCCCAAACGAGGTTTTGAAAATCTTCGAGAATGTCAAAGATCCGAGCTTTCTGAT 236
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 177 GTTAGCCCCAAACGAAGTTTTGAAAATCTTCGACAATGTCAAAGATCCGAGCTTCCTGCT 236
Query 237 GCCGGCTTACCAACATTACTCTAAACGTAAAGATTATCAACCGACGGAATCTCTCTACGC 296
||| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 237 GCCAGCTTACCAGCATTACTCTAAACGGAAAGACTATCAACCAACGGAATCTCTCTACGC 296
Query 297 CCTTCTGATCAACAAGTTTGGACAAGCTAAAATGTTCGATGAAATCGAAGAGGTAATGAG 356
|||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 297 CCTTATGATCAACAAGTTTGGCCAAGCTAAAATGTACGATGAAATCGAAGAAGTAATGAG 356
Query 357 TACTATAAAGCTTGAGAAAAGATGTCGTTTTTCAGAGGA-TTTCTTCTACAATTTGATGA 415
||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 357 AACTATAAAGCTTGAGAAAAGATGTCGTTTCTCAGAGGAGTTT-TTCTACAATTTGATGA 415
Query 416 GGATTTACGGGAATTTAGCCGGAAGAATCAACCGAGCGATCGAGATTTTGTTCGGTATGC 475
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 416 GGATTTACGGGAACTTAGCCGGAAGAATCAACCGAGCGATCGAGATATTGTTCGGTATGC 475
Query 476 CGGATTTCGGATGCTGGCCAAGCGCCAAAAGTTTCAATTTCATTCTGAATTTACTTGTTT 535
||||||| |||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct 476 CGGATTTTGGATGCTGGCCAAGTTCTAAGAGTTTCAATTTCATACTGAATTTACTTGTTT 535
Query 536 CGGCGAAGTTGTTCGATGAGATTCATAAGATCTTTGTGAGTGCTCCTAAGCTGGGTGTTG 595
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 CCGCGAAGTTGTTCGATGAGATTCATAAGATCTTTGTGAGTGCTCCTAAGCTAGGTGTTG 595
Query 596 AAATCGATGCTTGTTGTTTGAATATACTCATCAAAGGACTGTGCGAGAGTGGGAATTTGG 655
| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 596 AGATCGATGCTTGTTGCTTGAATATACTCATCAAAGGACTCTGTGAGAGTGGGAATTTAG 655
Query 656 AAGCTGCACTCCAACTGCTCGACGAATTTCCTAAACAAAAATCACGGCCTAATGTGATGA 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 AAGCTGCACTCCAACTGCTCGACGAATTTCCTCAACAAAAATCACGGCCTAATGTGATGA 715
Query 716 CGTTTTCTCCTTTGATCCGTGGTTTCTGTAATAAGGGAAAGTTCGAAGAAGCTTTTAAGT 775
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 CGTTTTCTCCTTTGATTCGTGGTTTCTGTAATAAGGGAAAGTTCGAAGAAGCTTTTAAAT 775
Query 776 TGTTGGAGAGGATGGAGAAGGAACGAATCAAACCAGACACTATCACGTTTAACATTTTGA 835
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 776 TGTTGGAGAGGATGGAGAAGGAACGAATCGAACCAGATACTATCACGTTTAACATTTTGA 835
Query 836 TTCCAGGGCTTAGGAAGAAAGGTAGGGTTGAAGAAGGGATTGATCTTTTGGAGAGAATGA 895
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 836 TTTCAGGGCTTAGGAAGAAAGGTAGAGTTGAAGAAGGGATTGATCTTTTAGAGAGAATGA 895
Query 896 AGCTAAAGGGGTGTGAACCAAATCCTGGGACTTATCAAGAGGTGTTATATGGTCTCTTGG 955
|| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 896 AGGTAAAGGGGTGTGAACCAAATCCTGGGACTTATCAGGAGGTGTTGTATGGTCTCTTGG 955
Query 956 ATAAAAAGAGGAACTTGGAAGCTAAAGAGATGATGAGTCAGATGATTTCATGGGGTATGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATAAAAAGAGGAACTTGGAAGCTAAAGAGATGATGAGTCAGATGATTTCATGGGGTATGA 1015
Query 1016 GACCCAGTTTTCTGTCGTACAAGAAGATGGTTCTGGGGCTCTGCGAAACGAAGTCGGTTG 1075
|||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1016 GACCCAGTTTTCTGTCTTACAAGAAGATGGTTTTGGGGCTTTGTGAAACGAAGTCGGTTG 1075
Query 1076 CGGAAATGGACTGGGTTTTGAGGAAAATGGTGAATCATGGTTTTGTTCCAAAAACAG-GC 1134
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 1076 TGGAAATGGACTGGGTTTTGAGGCAAATGGTGAATCATGGTTTTGTTCCAAAGACATTG- 1134
Query 1135 ATGTGGTGGAAAGCCGTTT-GCTGTGTTGTTTCAAAGAACAATGA---CTCTCAAGCAAA 1190
||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 1135 ATGTGGTGGAAAGTTGTTCAG-TGTGTTGTTTCAAAGAACAATGATGACTCTCAAGCAAA 1193
Query 1191 TTTGGATCGCATTACTGCT 1209
||||||||| |||||||||
Sbjct 1194 TTTGGATCGTATTACTGCT 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5