BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904398
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14740.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1463 0.0
> AT3G14740.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr3:4952061-4953423 REVERSE LENGTH=1273
Length=1273
Score = 1463 bits (792), Expect = 0.0
Identities = 961/1040 (92%), Gaps = 21/1040 (2%)
Strand=Plus/Plus
Query 1 ATGGATGCTCAATATCAAGATCTACCTCCTCTCAAAAGATTGAGATTGATGCAGCGAGAT 60
||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct 118 ATGGATGCTCAATATCAAGATCTACCTCCTCTCAAAAGATTAAGACTGTTGCAGAGAGAT 177
Query 61 CTCGAAGCTGCGCAACAACAACAGCTACTGAACCAACCGGAGGCGAAGTCGTTGCAGTTG 120
||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct 178 CTCGAAGCTGCTCAACAGCACCAGCTACCGAACCAACCGGAGATGAAGTCGTTGCAGTTG 237
Query 121 CCTGCGAAGAAGAGGAAGCAGACTCGTGTTGA-T-T-ACGACGACGATGCCGAGAACTCC 177
|| || |||||||||||||||||||||||||| | | |||| ||||| || |||||||||
Sbjct 238 CCGGCAAAGAAGAGGAAGCAGACTCGTGTTGATTATGACGATGACGACGCAGAGAACTCC 297
Query 178 AATCCTACCTATCATTGTCTTCCGGCGAAGAAAAGGATTTGGGCGATTGATCCTGAT-TT 236
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 298 AATCCCACCTATCATTGTCTTCCGGCGAAGAAAAGGATCTGGGCGATTGATCCCGATCTT 357
Query 237 GCTCTCC------GGTAATCCTTTTTCGCCTTTTGATCTGAATGTTGAGTATAAGCCTCC 290
|||||| ||||| || ||||||||||||||||| ||||| ||||||||| ||
Sbjct 358 -CTCTCCGGTGGTGGTAACCCCTTTTCGCCTTTTGATCTAAATGTAGAGTATAAG---CC 413
Query 291 TTCCGTTGAGGAGAAGTCAATTGAGAAAAAGTCAACTCT-AATGGTTGAATCTAGTCTAG 349
|| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 414 TTATGTTGAAGAGAAATCAATTGAGAAAAAGTCAACTCTAAAT-GTTGAATCTAGTCTAG 472
Query 350 AGGTGGAAGATGATGATGATGATAAAGAGAATGTAGATCCTCTAGGGAAAGAAAAAGTTT 409
|||| ||||| | |||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 473 AGGTAGAAGA--A-GATGATGATAAAGAGAATATAGATCCTCTAGGGAAAGGAAAAGCTT 529
Query 410 TAGATCTCTCAGATAGAGAAGTAGAAGATGAAGATGGGATTATGTGTGTTGTATGTCAAA 469
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 530 TAGATCTCTCTGATAGAGAAGTAGAAGATGAAGATGGGATTATGTGTGCTGTATGTCAAA 589
Query 470 GCACAGATGGTGATCCATCGAATCCAATTGTGTTCTGTGATGGTTGTGATTTGATGGTTC 529
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GTACAGATGGTGATCCATTGAATCCAATTGTGTTCTGTGATGGTTGTGATTTGATGGTTC 649
Query 530 ATGCTTCTTGCTATGGGAATCCTCTTGTTAAGGCTATACCAGAAGGTGATTGGTTTTGTA 589
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 650 ATGCTTCTTGCTATGGGAATCCTCTTGTTAAGGCTATTCCAGAAGGTGATTGGTTTTGTA 709
Query 590 GACAGTGTATATCATCGAAGAATCGAGAAAAGCTTTTCTCTTGCTGCTTGTGTACAACTA 649
|||||||| |||| |||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 710 GACAGTGTTTATCGTCGAAGAACCGAGAAAAGATCTTCTCTTGCTGCTTGTGTACAACTA 769
Query 650 AAGG-GGGAGCGATGAAACCTACTAATGATGGTCGATGGGCTCATATTACTTGCGCGTTG 708
|||| ||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 770 AAGGCGGG-GCGATGAAACCTACGAATGATGGTAGATGGGCTCATATTACTTGTGCGTTG 828
Query 709 TTTGTGCCTGAAGTTTACTTTGAGGATCCTGAAGGAAGAGAAGGGATTTGTTGTAGCGAG 768
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 829 TTTGTTCCGGAAGTTTACTTTGAGGATCCTGAAGGAAGAGAAGGGATTTGTTGTAGTGAG 888
Query 769 ATACCGAGTAAGAGATGGAAAGATAGGTGTTATTTGTGTAAGGTTAGACGCGGTTGTGTT 828
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTATTGAGTAAGAGATGGAAAGATAGGTGTTATTTGTGTAAGGTTAGACGCGGTTGTGTT 948
Query 829 ATCGAGTGTTCGGAGATGAGATGTAAGTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAA 888
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 ATTGAGTGTTCGGAGATGAGATGTAAGTTGGCTTTTCATGTTACTTGTGGGTTAAAGGAA 1008
Query 889 GATCTTTGCATTGAGTATCGTGAAGACAAGAAGAGTGGTGGTATTGTTGTTGGTTTCTGC 948
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1009 GATCTTTGTATTGAGTATCGTGAAGGGAAGAAGAGTGGTGGTATTGTTGTTGGTTTCTGT 1068
Query 949 AATGAGCATACCAAACTATGGGAAAGGCAACAGGAAAGTGGAAAGTACAAGATTGTTGCC 1008
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AATGAGCATACCAAACTTTGGGAAAGGCAACAGGAAAGTGGAAAGTACAAGATTGTTGCC 1128
Query 1009 AGAGATGAAGATAAGAAGTA 1028
||||| |||||||| |||||
Sbjct 1129 AGAGAAGAAGATAAAAAGTA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5