BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg904413
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14890.1 | Symbols: | phosphoesterase | chr3:5008742-501326... 3029 0.0
> AT3G14890.1 | Symbols: | phosphoesterase | chr3:5008742-5013265
FORWARD LENGTH=2299
Length=2299
Score = 3029 bits (1640), Expect = 0.0
Identities = 1959/2108 (93%), Gaps = 42/2108 (2%)
Strand=Plus/Plus
Query 92 ATGGCTATATGATTAAAGTAGTCCCCTTCGTGTCTCTTCGTTTCCTTTTCCCTC-TCCT- 149
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | |
Sbjct 2 ATGGCTATATGATTACAGTAGCCCCCTTCGTGTCTCTTCGTTTCCAGTTCCCTCTTTATA 61
Query 150 T-ATAAATCGTTCCACTCTCTTCTTCCGAG-AACAACCACAGTATCTCCTCTACAACCA- 206
| |||||||| ||||||||||| ||||||| || || ||||||||||| ||||||| ||
Sbjct 62 TAATAAATCGCTCCACTCTCTTTTTCCGAGAAAGAA-CACAGTATCTCGTCTACAA-CAC 119
Query 207 CAGTTACATTTTGAG---AA---C---AACAATGCCGGTCGTTGCTGAGTACGCGAAATC 257
| || |||||||||| || | |||||||||||| ||||||||||||||||| ||
Sbjct 120 CTGTCACATTTTGAGAACAACGGCGAAAACAATGCCGGTGGTTGCTGAGTACGCGAAGTC 179
Query 258 CAATCGATCGTCGTGTAAGTCATGCTCGAAAAAGATCGCTGTGAAATCGCTTAGGTTAGG 317
||||| |||||||||| |||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 180 GAATCGGTCGTCGTGTAGGTCATGTTCGAACAAGATAGCTGTGAAATCGCTTAGGTTAGG 239
Query 318 GTTAATTAGCAAAGGACCTGGCGGGGTTGACATGACCAGGTGGCACCATTTCGATTGTTT 377
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTGATTAGCAAAGGACGTGGCGGGGTTGACATGACCAGGTGGCACCATTTCGATTGTTT 299
Query 378 TCCGACTGATTCGGAATCGATTGCTTCCGTTGATGATATTCAAGGCTTATCCGCTTTAGA 437
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCGACTGATTCTGAGTCGATTGCTTCCGTTGATGATATTCAAGGCTTATCCGCTTTAGA 359
Query 438 GAAAGAAGATCAGGATGCTTTGACGAAATTGGTGGAACAATGTGGTCAAGAACCTGCTAA 497
|||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 360 GAAAGAAGATCAAGATGCTTTGACGAAATTGGTGGAACAATGTGGTAAAGTACCTGC-AA 418
Query 498 AAAACAGCGTGATGAGAAGAAGGAAAAGGTTAAGAAGCCTTTAGTTGGGCCGAAGAGGTT 557
|||| | | |||||||||||||| |||| ||| |||| | || | ||||||||| || |
Sbjct 419 AAAA-A-CCTGATGAGAAGAAGGGGAAGGCTAAAAAGCATATAATGGGGCCGAAGGGGCT 476
Query 558 TAACG-AGGC-G--ACAACTTCAAAAGTTATTGCTGATTATGCGAAATCGAGCAGATCAT 613
| ||| |||| | ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 T-ACGAAGGCGGCAACATCTTCAAAAGTTATTGCTGATAATGCGAAATCGAGCAGATCAT 535
Query 614 CATGCAAGAGGTGCTCTCAGACCATCGTTTCAAAGGATCTGAGAGTGGGGCTGGTGACTA 673
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 536 CATGCAACAGGTGTTCTCAGACAATCGTTTCAAAGGATCTGAGAGTGGGGCTGGTTACT- 594
Query 674 G-AGACGCCAGGGGATTTGATGTGACAAGCTGGCATCACTTGGGTTGTTTTCCCATTGAC 732
| |||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 595 GAAGACTCCAGGGGATTTGATATAACAAGATGGCATCACTTGGGTTGTTTTCCCATTGAT 654
Query 733 TGGCATCCGATTGATTCTGTGGAGGACGTTGGTGGATATTCATCACTTGAGAAAGGTGAC 792
| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 655 TTTCATCCAATTGATTCTGTGGAGGACATTGGTGGATATTCATCGCTTGAGAAAGGTGAC 714
Query 793 CAGAAGGAATTACAGCAATTGGCCGAACTAAGCGAGAAGGAT---ACTTTGATAGATGAT 849
|||| ||||||| || | ||||||||| ||| | |||||||| |||||||||||||||
Sbjct 715 CAGATGGAATTAAAGTATTTGGCCGAAGTAAACAAGAAGGATAAAACTTTGATAGATGAT 774
Query 850 GTCCAGAAGATGGATGAAGGTGATGATGAATCTGTAGCTGATAATGAGCTAACTGAGGAG 909
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 775 GTCCAGAAGATGGATGAAGGTGATGATGAAGCTATAGCTGATAATGAGCTAACGGAGGAG 834
Query 910 ACaaaaaaaGGAAAACATTCCCCGGTTGCAAAATTGGTGGAACAACCTGGCGAGCCTGCA 969
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 835 ACCAAAAAAGGAAAACATTCTCCTGTTGCAAAATTGGTGGAACAACCTGGCGAGCCTGCA 894
Query 970 AAAGAAGTCAATGAGGATGAAGAGA-TAAAAATGCCTGCATCTGATGAAATAAGTGGGCA 1028
||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||| |||
Sbjct 895 AAAGAAG---ATGAGGATGAAGAGAGTAAAAA-GCCTGCATCAGATGAAATAAGTGAGCA 950
Query 1029 GAAGAATAAGGA-GACGACAGGTTCTCCTGATTCTTCAAAAGTTATCTCTGAGTATGCAA 1087
||||| |||||| | || | |||||||||||||||||||||||| ||||||||||| |
Sbjct 951 GAAGACTAAGGATG-TGAAAAATTCTCCTGATTCTTCAAAAGTTATTTCTGAGTATGCGA 1009
Query 1088 AATCGAGCAGATCAACGTGCAAGAAATGCTCTCAGACTATCGCTGCAAAGGAACTGAGGT 1147
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1010 AATCGAGCAGATCAACATGCAAGAAGTGCTCTCAGACTATCGCTGCAAAGGAACTGAGGT 1069
Query 1148 TGGGCCTGGTGACCAGAAACTTCCGTGGCTTTGATATGACACAATGGCATCACGTGGGTT 1207
|||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1070 TGGGGCTAGTGACCAGAAACTTCCGTGGCTTTGATATGAAACAATGGCATCACTTGGGTT 1129
Query 1208 GTTTTCCTGTCGACTCTGATCCAATTAG-TTCTGTAGTGGACATTGGTGGATTTTCAGAA 1266
|||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||
Sbjct 1130 GTTTTCCTGTCGACTCTGATCCAATT-GTTTCGGTAGAGGACATTGGTGGATTTTCAGAA 1188
Query 1267 CTGCAGAGTGGTGATCAGGATGCATTAAAGGAATTGGTCCAACAATGCGGGAAG-AGGAC 1325
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1189 CTGCAGAGTGGTGATCAGGATGCATTAAAGGAATTGGTCCAACAATGCGGGAAGCA-GAC 1247
Query 1326 TTTGGTAGATAAGATGGATGAAGATAATGATGA-ATCTGAAGCTAAAAATAAGCTAACTG 1384
||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 1248 TTTGGTAGATAAGATGGATGAAGATAATGATGACA-CTGAAGCTAAAATTAAGCTAACTG 1306
Query 1385 AGGAGACAAACAAAAGAAAACATTCCGAGGTTGGGGAGATAGTGGAAAAAGATGAATCGC 1444
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 1307 AGGAGACAAACAAAAGAAAACATTCTGAGGTTGGGGAGATGGTGGAAGAAGATGAATCGC 1366
Query 1445 TAACTAAAGCGAACCAACACATGGCTAAAACACATAAGGTGAACATCAGTGAGTCGACTT 1504
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1367 TAACTAAAGCGAAACAACAGATGGCTAAAACACATAAGGTGAACATGAGTGAGTCAACTT 1426
Query 1505 CTCAGGTCGAGGTTGAAACAGAAATCTCTCTTTCAGCTTCTGATGTGAAGGATAAGTACA 1564
||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1427 CTCAGGTCGAGGTTGAAGCAGAAATCACTCTTTCAGCGTCTGATGTGAAGGATAAGTACA 1486
Query 1565 GGGATGCCAATCTATTACCAAAATGGAAAGCTTTTGAGACAGTTATATTCCTTGAGCGGG 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GGGATGCCAATCTATTACCAAAATGGAAAGCTTTTGAGACAGTTATATTCCTTGAGCGGG 1546
Query 1625 ATGATGGTCTTAATGATTCAGAGAAAATAGCTGCATTTGACTTTGATGGATGCCTTGCAA 1684
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1547 ATGATGGTCTTAATGATTCAGAAAAAATAGCTGCATTTGACTTTGATGGATGCCTTGCAA 1606
Query 1685 AAACATCTGTGAAAATAGTAGGGGCAGATGCATGGTCCCTAATGTATCCTTCCATTCCTG 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 AAACATCTGTGAAAATAGTAGGGGCAGATGCATGGTCCCTAATGTATCCTTCCATTCCTG 1666
Query 1745 AAAAACTGCAAAGTCTGTACAATCAAGGCTATAAGCTGGTCATTTTCACAAATGAATCCA 1804
| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AGAAACTGCAAAGTCTGCACGATCAAGGCTATAAGCTGGTCATTTTCACAAATGAATCCA 1726
Query 1805 ACATTGATCGATGGAAGAACAAGCGGCAAGCTGCTGTAGATTCGAAAATCGGACGTCTCA 1864
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1727 ACATTGATCGATGGAAGAACAAGCGGCAAGCTGCTGTAGATTCGAAAATTGGACGGCTCA 1786
Query 1865 ACAGTTTTATCGAGCGCGTGAAGGTCCCCATTCAGGTGTTTATAGCCTGTGGAGTCTCAA 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 ACAGTTTTATCGAGCGCGTGAAGGTCCCCATTCAGGTGTTTATAGCCTGTGGAGTCTCAA 1846
Query 1925 GTTCTGGTGGTAAAGGTGGTAAAGATGACCTTTACCGCAAACCCAAGGCTGGAATGTGGC 1984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 GTTCTGGTGGTAAAGGTGGTAAAGATGACCTTTACCGCAAACCCAAGGCTGGAATGTGGC 1906
Query 1985 AACTCATGAAGAAGCACTTTAACTCTGGAATTGCAATTGATATGGATAAATCCTTCTACG 2044
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AACTCATGAAGAAGCATTTTAACTCTGGAATTGCAATTGATATGGATAAATCCTTCTACG 1966
Query 2045 TTGGGGATGCAGCCGGAAGAAAAATGGATCATAGCGACGCTGACATCAAATTTGCACAGG 2104
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 TTGGGGATGCAGCTGGAAGAAAAATGGATCACAGCGACGCTGACATCAAATTTGCACAGG 2026
Query 2105 CGAGTGGGCTAAAGTTTTATACCCCGGAGGAATACTTTATCCCCGCAAGTACATCGGCAG 2164
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2027 CGAGTGGGCTAAAGTTTTTTACCCCGGAGGAATACTTTATCCCCTCAAGTACATCGCCAG 2086
Query 2165 GGACTTAG 2172
||||||||
Sbjct 2087 GGACTTAG 2094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107730369570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5